mRNA_M-pyrifera_M_contig89270.20689.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig89270.20689.1
Unique NamemRNA_M-pyrifera_M_contig89270.20689.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig89270.20689.1 vs. uniprot
Match: A0A517PUG2_9PLAN (UvrABC system protein A n=9 Tax=Gimesia TaxID=1649453 RepID=A0A517PUG2_9PLAN)

HSP 1 Score: 547 bits (1409), Expect = 1.070e-176
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 1 
Query:    1 NTRLINTLKKLRDIGNTIVMVEHDREVLEASDCLYDFGPGAGRFGGTIVGKGSPKQLKRSKKSMTGQYLADQRTIAIPSERRVIYEKQGKADVPLSPTGHWLELTGARHHNLQSVDLQIPLGSFTCITGVSGSGKSSLIEETLARAVTKKLHRAKEAPGPYQDLLGLDQINKAIIVDQRPLGNTPASNPATYTGVFDQIRELFSRLPEAKVRGYQPGRFSFNRSGGRCEDCEGNGQRCIEMHFLPDVWVTCETCNGKRYNQETL 792
            NTRLINTLKKLRDIGNTIVMVEHDREVLEASDCLYDFGPGAGRFGGTIVGKGSPKQLKRSKKSMTGQYLADQRTIAIPSERRVIYEKQGKADVPLSPTGHWLELTGARHHNLQSVDLQIPLGSFTCITGVSGSGKSSLIEETLARAVTKKLHRAKEAPGPYQDLLGLDQINKAIIVDQRPLGNTPASNPATYTGVFDQIRELFSRLPEAKVRGYQPGRFSFNRSGGRCEDCEGNGQRCIEMHFLPDVWVTCETCNGKRYNQETL
Sbjct: 1537 NTRLINTLKKLRDIGNTIVMVEHDREVLEASDCLYDFGPGAGRFGGTIVGKGSPKQLKRSKKSMTGQYLADQRTIAIPSERRVIYEKQGKADVPLSPTGHWLELTGARHHNLQSVDLQIPLGSFTCITGVSGSGKSSLIEETLARAVTKKLHRAKEAPGPYQDLLGLDQINKAIIVDQRPLGNTPASNPATYTGVFDQIRELFSRLPEAKVRGYQPGRFSFNRSGGRCEDCEGNGQRCIEMHFLPDVWVTCETCNGKRYNQETL 1800
[Close]
BLAST of mRNA_M-pyrifera_M_contig89270.20689.1 vs. uniprot
Match: A0A350KDK8_9PLAN (Excinuclease ABC subunit A (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350KDK8_9PLAN)

HSP 1 Score: 515 bits (1327), Expect = 3.850e-174
Identity = 244/264 (92.42%), Postives = 255/264 (96.59%), Query Frame = 1 
Query:    1 NTRLINTLKKLRDIGNTIVMVEHDREVLEASDCLYDFGPGAGRFGGTIVGKGSPKQLKRSKKSMTGQYLADQRTIAIPSERRVIYEKQGKADVPLSPTGHWLELTGARHHNLQSVDLQIPLGSFTCITGVSGSGKSSLIEETLARAVTKKLHRAKEAPGPYQDLLGLDQINKAIIVDQRPLGNTPASNPATYTGVFDQIRELFSRLPEAKVRGYQPGRFSFNRSGGRCEDCEGNGQRCIEMHFLPDVWVTCETCNGKRYNQETL 792
            NTRLINTLKKLRDIGNTIVMVEHDREVLEASDCLYDFGPGAGRFGGTIVGKGSPKQLKR KKS+TGQYLADQ TI +P ERRVIYEKQGK + PLSPTGHWLEL GAR HNL+SVDL+IPLGSFTCITGVSGSGKSSL+EETLARAVTKKLHR+KEAPGP+ DLLGLDQINKAIIVDQ+PLGNTPASNPATYTGVFDQIRELFSRLP+AKVRGYQPGRFSFNRSGGRCEDC+GNGQRCIEMHFLPDVWVTCETCNGKRYNQETL
Sbjct:  223 NTRLINTLKKLRDIGNTIVMVEHDREVLEASDCLYDFGPGAGRFGGTIVGKGSPKQLKRKKKSLTGQYLADQLTIPLPQERRVIYEKQGKTETPLSPTGHWLELKGARQHNLKSVDLKIPLGSFTCITGVSGSGKSSLVEETLARAVTKKLHRSKEAPGPHDDLLGLDQINKAIIVDQKPLGNTPASNPATYTGVFDQIRELFSRLPDAKVRGYQPGRFSFNRSGGRCEDCDGNGQRCIEMHFLPDVWVTCETCNGKRYNQETL 486
[Close]
BLAST of mRNA_M-pyrifera_M_contig89270.20689.1 vs. uniprot
Match: A0A3D3RGX3_9PLAN (Excinuclease ABC subunit A (Fragment) n=1 Tax=Gimesia maris TaxID=122 RepID=A0A3D3RGX3_9PLAN)

HSP 1 Score: 513 bits (1322), Expect = 3.680e-170
Identity = 243/264 (92.05%), Postives = 254/264 (96.21%), Query Frame = 1 
Query:    1 NTRLINTLKKLRDIGNTIVMVEHDREVLEASDCLYDFGPGAGRFGGTIVGKGSPKQLKRSKKSMTGQYLADQRTIAIPSERRVIYEKQGKADVPLSPTGHWLELTGARHHNLQSVDLQIPLGSFTCITGVSGSGKSSLIEETLARAVTKKLHRAKEAPGPYQDLLGLDQINKAIIVDQRPLGNTPASNPATYTGVFDQIRELFSRLPEAKVRGYQPGRFSFNRSGGRCEDCEGNGQRCIEMHFLPDVWVTCETCNGKRYNQETL 792
            NTRLINTLKKLRDIGNTIVMVEHDREVLEASDCLYDFGPGAGRFGGTIVGKGSPKQLKR KKS+TGQYLADQ TI +P ERRVIYEK GK + PLSPTGHWLEL GAR HNL+SVDL+IPLGSFTCITGVSGSGKSSL+EETLARAVTKKLHR+KEAPGP+ DLLGLDQINKAIIVDQ+PLGNTPASNPATYTGVFDQIRELFSRLP+AKVRGYQPGRFSFNRSGGRCEDC+GNGQRCIEMHFLPDVWVTCETCNGKRYNQETL
Sbjct:  537 NTRLINTLKKLRDIGNTIVMVEHDREVLEASDCLYDFGPGAGRFGGTIVGKGSPKQLKRKKKSLTGQYLADQLTIPLPQERRVIYEKHGKTETPLSPTGHWLELKGARQHNLKSVDLKIPLGSFTCITGVSGSGKSSLVEETLARAVTKKLHRSKEAPGPHDDLLGLDQINKAIIVDQKPLGNTPASNPATYTGVFDQIRELFSRLPDAKVRGYQPGRFSFNRSGGRCEDCDGNGQRCIEMHFLPDVWVTCETCNGKRYNQETL 800
[Close]
BLAST of mRNA_M-pyrifera_M_contig89270.20689.1 vs. uniprot
Match: A0A2D5GV94_9PLAN (Excinuclease ABC subunit A (Fragment) n=1 Tax=Gimesia sp. TaxID=2024833 RepID=A0A2D5GV94_9PLAN)

HSP 1 Score: 513 bits (1322), Expect = 9.090e-167
Identity = 243/264 (92.05%), Postives = 254/264 (96.21%), Query Frame = 1 
Query:    1 NTRLINTLKKLRDIGNTIVMVEHDREVLEASDCLYDFGPGAGRFGGTIVGKGSPKQLKRSKKSMTGQYLADQRTIAIPSERRVIYEKQGKADVPLSPTGHWLELTGARHHNLQSVDLQIPLGSFTCITGVSGSGKSSLIEETLARAVTKKLHRAKEAPGPYQDLLGLDQINKAIIVDQRPLGNTPASNPATYTGVFDQIRELFSRLPEAKVRGYQPGRFSFNRSGGRCEDCEGNGQRCIEMHFLPDVWVTCETCNGKRYNQETL 792
            NTRLINTLKKLRDIGNTIVMVEHDREVLEASDCLYDFGPGAGRFGGTIVGKGSPKQLKR KKS+TGQYLADQ TI +P ERRVIYEK GK + PLSPTGHWLEL GAR HNL+SVDL+IPLGSFTCITGVSGSGKSSL+EETLARAVTKKLHR+KEAPGP+ DLLGLDQINKAIIVDQ+PLGNTPASNPATYTGVFDQIRELFSRLP+AKVRGYQPGRFSFNRSGGRCEDC+GNGQRCIEMHFLPDVWVTCETCNGKRYNQETL
Sbjct:  990 NTRLINTLKKLRDIGNTIVMVEHDREVLEASDCLYDFGPGAGRFGGTIVGKGSPKQLKRKKKSLTGQYLADQLTIPLPQERRVIYEKHGKTETPLSPTGHWLELKGARQHNLKSVDLKIPLGSFTCITGVSGSGKSSLVEETLARAVTKKLHRSKEAPGPHDDLLGLDQINKAIIVDQKPLGNTPASNPATYTGVFDQIRELFSRLPDAKVRGYQPGRFSFNRSGGRCEDCDGNGQRCIEMHFLPDVWVTCETCNGKRYNQETL 1253
[Close]
BLAST of mRNA_M-pyrifera_M_contig89270.20689.1 vs. uniprot
Match: A0A518IHS7_9PLAN (UvrABC system protein A n=10 Tax=Planctomycetaceae TaxID=126 RepID=A0A518IHS7_9PLAN)

HSP 1 Score: 507 bits (1306), Expect = 2.240e-162
Identity = 241/264 (91.29%), Postives = 252/264 (95.45%), Query Frame = 1 
Query:    1 NTRLINTLKKLRDIGNTIVMVEHDREVLEASDCLYDFGPGAGRFGGTIVGKGSPKQLKRSKKSMTGQYLADQRTIAIPSERRVIYEKQGKADVPLSPTGHWLELTGARHHNLQSVDLQIPLGSFTCITGVSGSGKSSLIEETLARAVTKKLHRAKEAPGPYQDLLGLDQINKAIIVDQRPLGNTPASNPATYTGVFDQIRELFSRLPEAKVRGYQPGRFSFNRSGGRCEDCEGNGQRCIEMHFLPDVWVTCETCNGKRYNQETL 792
            NTRLINTLKKLRDIGNTIVMVEHDREVLEASDCLYDFGPGAGRFGGTIVGKGSPKQL+R KKS+TGQYL+DQ TI +P ERRVIYEKQGK DV +SPTGHWLEL GAR HNLQSVDL IPLG+F CITGVSGSGKSSLIEETLARAVTKKLHR+K APGP+ DLLGL+QINKAIIVDQRPLGNTPASNPATYTGVFDQIRELFSRLP++KVRGYQPGRFSFNRSGGRCEDCEGNGQRCIEMHFLPDVWVTCETCNGKRYNQETL
Sbjct: 1535 NTRLINTLKKLRDIGNTIVMVEHDREVLEASDCLYDFGPGAGRFGGTIVGKGSPKQLQRKKKSLTGQYLSDQLTIPLPQERRVIYEKQGKTDVAVSPTGHWLELKGARQHNLQSVDLSIPLGAFVCITGVSGSGKSSLIEETLARAVTKKLHRSKVAPGPFDDLLGLEQINKAIIVDQRPLGNTPASNPATYTGVFDQIRELFSRLPDSKVRGYQPGRFSFNRSGGRCEDCEGNGQRCIEMHFLPDVWVTCETCNGKRYNQETL 1798
[Close]
BLAST of mRNA_M-pyrifera_M_contig89270.20689.1 vs. uniprot
Match: A0A517VSB2_9PLAN (UvrABC system protein A n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VSB2_9PLAN)

HSP 1 Score: 494 bits (1272), Expect = 1.090e-157
Identity = 234/264 (88.64%), Postives = 251/264 (95.08%), Query Frame = 1 
Query:    1 NTRLINTLKKLRDIGNTIVMVEHDREVLEASDCLYDFGPGAGRFGGTIVGKGSPKQLKRSKKSMTGQYLADQRTIAIPSERRVIYEKQGKADVPLSPTGHWLELTGARHHNLQSVDLQIPLGSFTCITGVSGSGKSSLIEETLARAVTKKLHRAKEAPGPYQDLLGLDQINKAIIVDQRPLGNTPASNPATYTGVFDQIRELFSRLPEAKVRGYQPGRFSFNRSGGRCEDCEGNGQRCIEMHFLPDVWVTCETCNGKRYNQETL 792
            NTRLINTLKKLRDIGNTIVMVEHDREVLEASD LYDFGPGAGRFGGTIVG+GSPKQL+R KKS+TGQYL+D  TI +P ERRVIY+KQGK + P+SPTGHWLEL GAR +NLQSVDL IPLG+F CITGVSGSGKSSLIEETLARAVTKKLHR+KEAPGP+ +LLGLDQINKAIIVDQ+PLGNTPASNPATYTGVFDQIRELFSRLP++KVRGYQPGRFSFNRSGGRCEDC+GNGQRCIEMHFLPDVWVTCETCNGKRYNQETL
Sbjct: 1535 NTRLINTLKKLRDIGNTIVMVEHDREVLEASDRLYDFGPGAGRFGGTIVGEGSPKQLQRRKKSLTGQYLSDHLTITVPEERRVIYQKQGKRENPVSPTGHWLELKGARQNNLQSVDLSIPLGAFVCITGVSGSGKSSLIEETLARAVTKKLHRSKEAPGPHDELLGLDQINKAIIVDQKPLGNTPASNPATYTGVFDQIRELFSRLPDSKVRGYQPGRFSFNRSGGRCEDCDGNGQRCIEMHFLPDVWVTCETCNGKRYNQETL 1798
[Close]
BLAST of mRNA_M-pyrifera_M_contig89270.20689.1 vs. uniprot
Match: A0A257W4N9_9BACT (Excinuclease ABC subunit A (Fragment) n=1 Tax=Planctomycetales bacterium 12-60-4 TaxID=1970541 RepID=A0A257W4N9_9BACT)

HSP 1 Score: 372 bits (956), Expect = 3.060e-121
Identity = 178/300 (59.33%), Postives = 223/300 (74.33%), Query Frame = 1 
Query:    1 NTRLINTLKKLRDIGNTIVMVEHDREVLEASDCLYDFGPGAGRFGGTIVGKGSPKQLKRSKKSMTGQYLADQRTIAIPSERRVIYEKQGK----------------------------------ADVPLSP--TGHWLELTGARHHNLQSVDLQIPLGSFTCITGVSGSGKSSLIEETLARAVTKKLHRAKEAPGPYQDLLGLDQINKAIIVDQRPLGNTPASNPATYTGVFDQIRELFSRLPEAKVRGYQPGRFSFNRSGGRCEDCEGNGQRCIEMHFLPDVWVTCETCNGKRYNQETL 792
            N RL+  L++LRD+GNTIVMVEHDREVL+A+D LYDFGPGAGRFGGT+    +P  ++RS  S+TG++L+D+  I IP++RR+I    G                                   A+ P S   +G WLEL GAR +NL++VDL+IPLG+ T +TGVSGSGKSSLI+ETLA+A+ +KL+R+ + PGPY +LLGL  ++K I+VDQ+PLG+TPASNPATYTGVFD+IRELF+RLP++KVRGY+P RFSFNRSGGRCE CEGNGQ+CIEMHFLPDVWV CE C GKRYN ETL
Sbjct:  125 NGRLLEALRRLRDLGNTIVMVEHDREVLQAADRLYDFGPGAGRFGGTVTASAAPADIRRSDNSLTGKFLSDREQIVIPAQRRIIPPSGGPQPPEPATTSKKRVAKPSVRRRATKSLLPSTTVQGAEAPRSEVHSGGWLELLGARQNNLRNVDLRIPLGTLTAVTGVSGSGKSSLIQETLAKAIARKLNRSSDQPGPYDELLGLQHLSKLIVVDQQPLGSTPASNPATYTGVFDEIRELFARLPDSKVRGYRPARFSFNRSGGRCETCEGNGQKCIEMHFLPDVWVECEDCRGKRYNPETL 424
[Close]
BLAST of mRNA_M-pyrifera_M_contig89270.20689.1 vs. uniprot
Match: UPI00142070BB (excinuclease ABC subunit UvrA n=1 Tax=Rubinisphaera sp. JC658 TaxID=2713176 RepID=UPI00142070BB)

HSP 1 Score: 390 bits (1003), Expect = 3.550e-121
Identity = 177/264 (67.05%), Postives = 224/264 (84.85%), Query Frame = 1 
Query:    1 NTRLINTLKKLRDIGNTIVMVEHDREVLEASDCLYDFGPGAGRFGGTIVGKGSPKQLKRSKKSMTGQYLADQRTIAIPSERRVIYEKQGKADVPLSPTGHWLELTGARHHNLQSVDLQIPLGSFTCITGVSGSGKSSLIEETLARAVTKKLHRAKEAPGPYQDLLGLDQINKAIIVDQRPLGNTPASNPATYTGVFDQIRELFSRLPEAKVRGYQPGRFSFNRSGGRCEDCEGNGQRCIEMHFLPDVWVTCETCNGKRYNQETL 792
            N RL+  L+KLRD+GNT+V+VEHDREVL+A+D LYDFGPGAGR+GG++ G+G+PKQ+ + +K++TG+YL+D++ I IPS RR+        D   +P G WLE+ GARHHNL++VDL+IPLG+FTC+TGVSGSGKS+LIE+TLA+A+++ LHR+   P P+ +L G++ +NK I VDQ+PLGNTPASNPATYTGVF+ IR LF++LPEAKVRGY+P RFSFNR GGRCEDCEGNGQ+CIEMHFLPDVWV CETC GKRYNQETL
Sbjct: 1545 NGRLLGALQKLRDLGNTLVLVEHDREVLDAADRLYDFGPGAGRYGGSVTGEGTPKQIAK-RKTLTGEYLSDKKVIPIPSTRRMT------TDTEETPGGGWLEVLGARHHNLRNVDLRIPLGTFTCVTGVSGSGKSTLIEDTLAKALSRLLHRSNSQPAPFNELRGVEAVNKIITVDQQPLGNTPASNPATYTGVFEPIRNLFAQLPEAKVRGYRPARFSFNRKGGRCEDCEGNGQKCIEMHFLPDVWVECETCRGKRYNQETL 1801
[Close]
BLAST of mRNA_M-pyrifera_M_contig89270.20689.1 vs. uniprot
Match: A0A2E7D1K8_9PLAN (Excinuclease ABC subunit A n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7D1K8_9PLAN)

HSP 1 Score: 390 bits (1003), Expect = 3.580e-121
Identity = 184/277 (66.43%), Postives = 219/277 (79.06%), Query Frame = 1 
Query:    1 NTRLINTLKKLRDIGNTIVMVEHDREVLEASDCLYDFGPGAGRFGGTIVGKGSPKQLKRSKKSMTGQYLADQRTIAIPSERRVIYEKQ-------------GKADVPLSPTGHWLELTGARHHNLQSVDLQIPLGSFTCITGVSGSGKSSLIEETLARAVTKKLHRAKEAPGPYQDLLGLDQINKAIIVDQRPLGNTPASNPATYTGVFDQIRELFSRLPEAKVRGYQPGRFSFNRSGGRCEDCEGNGQRCIEMHFLPDVWVTCETCNGKRYNQETL 792
            N RL+  LK+LR++GNT+V+VEHDREVLE++D LYDFGPGAGRFGGT+   G+PKQL +SK+SMTGQ+L+ QRTIAIP  RR+   K+              K +    P G WLEL GAR HNL++VDL++PLG+ TC+TGVSGSGKSSL+E TLARA+ K+LHRA + PGP+ +L GL  INK I+VDQ+PLGNTP SNP TYTGVF+ IR LF+RLPEAKVRGY PGRFSFNR GGRCE CEGNGQ+CIEMHFLPDVWV C+ C G RYNQETL
Sbjct: 1544 NNRLLKALKRLRNLGNTLVLVEHDREVLESADRLYDFGPGAGRFGGTVTDAGTPKQLGKSKRSMTGQFLSSQRTIAIPDNRRMPSAKELQDIAESNIVAGRPKLEDHDPPGGGWLELVGARQHNLRNVDLRVPLGTLTCVTGVSGSGKSSLVEHTLARAIAKRLHRAGDTPGPFDELNGLQHINKLIVVDQQPLGNTPKSNPGTYTGVFEHIRALFARLPEAKVRGYGPGRFSFNRPGGRCEACEGNGQKCIEMHFLPDVWVECDECRGFRYNQETL 1820
[Close]
BLAST of mRNA_M-pyrifera_M_contig89270.20689.1 vs. uniprot
Match: A0A3E0PWY6_9BACT (Excinuclease ABC subunit UvrA n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0PWY6_9BACT)

HSP 1 Score: 387 bits (995), Expect = 4.250e-120
Identity = 181/269 (67.29%), Postives = 226/269 (84.01%), Query Frame = 1 
Query:    1 NTRLINTLKKLRDIGNTIVMVEHDREVLEASDCLYDFGPGAGRFGGTIVGKGSPKQL-KRSKKSMTGQYLADQRTIAIPSERRVIY----EKQGKADVPLSPTGHWLELTGARHHNLQSVDLQIPLGSFTCITGVSGSGKSSLIEETLARAVTKKLHRAKEAPGPYQDLLGLDQINKAIIVDQRPLGNTPASNPATYTGVFDQIRELFSRLPEAKVRGYQPGRFSFNRSGGRCEDCEGNGQRCIEMHFLPDVWVTCETCNGKRYNQETL 792
            N RLI  L KLRDIGNT+V+VEHDREVLE++D LYDFGPGAGRFGG +V  G+P+Q+ +R K S+TG YL+ QR+I IP +RRV      +++  + V  +PTG+WL LT  RHHNL+ VDL+IPLG+ TC+TG+SGSGKSSL+EETLARAV ++L+R+ EAPGP+ +L G++ +NK I+VDQ+PLG+TPASNPATYTGVF+ IRELFSR+P+A+VRGY+PGRFSFNR GGRCEDCEG GQ+ IEMHFLPDVWV C+TC GKR+NQETL
Sbjct: 1563 NGRLIEALHKLRDIGNTVVLVEHDREVLESADRLYDFGPGAGRFGGLVVSDGTPRQIARRGKSSLTGAYLSGQRSIPIPKQRRVNRMESPDREDVSQVYETPTGNWLTLTDCRHHNLRGVDLRIPLGALTCVTGLSGSGKSSLVEETLARAVARRLNRSGEAPGPFGELRGVEHLNKLIVVDQQPLGSTPASNPATYTGVFELIRELFSRVPDARVRGYRPGRFSFNRPGGRCEDCEGMGQKKIEMHFLPDVWVECDTCRGKRFNQETL 1831
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89270.20689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517PUG2_9PLAN1.070e-176100.00UvrABC system protein A n=9 Tax=Gimesia TaxID=1649... [more]
A0A350KDK8_9PLAN3.850e-17492.42Excinuclease ABC subunit A (Fragment) n=1 Tax=Plan... [more]
A0A3D3RGX3_9PLAN3.680e-17092.05Excinuclease ABC subunit A (Fragment) n=1 Tax=Gime... [more]
A0A2D5GV94_9PLAN9.090e-16792.05Excinuclease ABC subunit A (Fragment) n=1 Tax=Gime... [more]
A0A518IHS7_9PLAN2.240e-16291.29UvrABC system protein A n=10 Tax=Planctomycetaceae... [more]
A0A517VSB2_9PLAN1.090e-15788.64UvrABC system protein A n=2 Tax=Gimesia aquarii Ta... [more]
A0A257W4N9_9BACT3.060e-12159.33Excinuclease ABC subunit A (Fragment) n=1 Tax=Plan... [more]
UPI00142070BB3.550e-12167.05excinuclease ABC subunit UvrA n=1 Tax=Rubinisphaer... [more]
A0A2E7D1K8_9PLAN3.580e-12166.43Excinuclease ABC subunit A n=1 Tax=Planctomycetace... [more]
A0A3E0PWY6_9BACT4.250e-12067.29Excinuclease ABC subunit UvrA n=1 Tax=Planctomycet... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig89270contigM-pyrifera_M_contig89270:13..807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score514.6
Seed ortholog evalue2.7e-143
Seed eggNOG ortholog344747.PM8797T_20099
Preferred nameuvrA
KEGG koko:K03701
KEGG Pathwayko03420,map03420
Hectar predicted targeting categoryother localisation
EggNOG free text desc.The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate
EggNOG OGs2IXFK@203682,COG0178@1,COG0178@2
COG Functional cat.L
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Exons1
Model size795
Cds size795
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816802.6914203-CDS-M-pyrifera_M_contig89270:12..8071622816802.6914203-CDS-M-pyrifera_M_contig89270:12..807Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89270 13..807 -
1692278187.5794837-CDS-M-pyrifera_M_contig89270:12..8071692278187.5794837-CDS-M-pyrifera_M_contig89270:12..807Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig89270 13..807 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig89270.20689.1prot_M-pyrifera_M_contig89270.20689.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig89270 13..807 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig89270.20689.1

>prot_M-pyrifera_M_contig89270.20689.1 ID=prot_M-pyrifera_M_contig89270.20689.1|Name=mRNA_M-pyrifera_M_contig89270.20689.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=265bp
NTRLINTLKKLRDIGNTIVMVEHDREVLEASDCLYDFGPGAGRFGGTIVG
KGSPKQLKRSKKSMTGQYLADQRTIAIPSERRVIYEKQGKADVPLSPTGH
WLELTGARHHNLQSVDLQIPLGSFTCITGVSGSGKSSLIEETLARAVTKK
LHRAKEAPGPYQDLLGLDQINKAIIVDQRPLGNTPASNPATYTGVFDQIR
ELFSRLPEAKVRGYQPGRFSFNRSGGRCEDCEGNGQRCIEMHFLPDVWVT
CETCNGKRYNQETL*
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mRNA from alignment at M-pyrifera_M_contig89270:13..807-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig89270.20689.1 ID=mRNA_M-pyrifera_M_contig89270.20689.1|Name=mRNA_M-pyrifera_M_contig89270.20689.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=795bp|location=Sequence derived from alignment at M-pyrifera_M_contig89270:13..807- (Macrocystis pyrifera P11B4 male)
AACACGCGCCTGATTAACACGCTGAAAAAACTGCGGGACATCGGCAATAC
AATTGTGATGGTCGAGCATGACCGCGAAGTGCTTGAAGCGTCTGACTGTC
TCTATGATTTCGGGCCCGGTGCCGGCCGCTTTGGCGGGACGATTGTCGGA
AAAGGTTCCCCAAAGCAGTTGAAGCGTAGCAAAAAGTCGATGACCGGTCA
GTATCTGGCCGATCAGAGGACGATTGCCATCCCCAGTGAGCGGCGTGTGA
TCTATGAAAAACAGGGGAAAGCAGACGTTCCGCTTTCGCCCACCGGACAC
TGGCTGGAACTGACCGGCGCCCGCCACCACAATCTGCAGTCCGTCGATCT
TCAGATTCCGCTCGGCTCATTCACCTGTATTACAGGCGTTTCCGGATCGG
GTAAGAGTTCACTCATCGAAGAAACACTGGCCCGGGCGGTGACGAAAAAA
CTGCATCGCGCCAAGGAAGCCCCCGGTCCCTACCAGGATCTGCTGGGACT
GGATCAGATCAATAAAGCGATCATCGTCGATCAGCGTCCCCTGGGGAACA
CACCCGCATCAAACCCCGCGACTTATACCGGTGTGTTCGATCAGATTCGC
GAACTCTTCTCGCGACTGCCGGAAGCGAAGGTGCGCGGCTATCAACCCGG
CCGCTTCAGCTTTAACCGATCCGGGGGCCGTTGTGAAGACTGTGAGGGCA
ACGGTCAGCGGTGTATTGAGATGCACTTCCTGCCCGATGTCTGGGTGACC
TGTGAAACCTGTAACGGCAAACGTTACAACCAGGAAACGCTCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig89270:13..807-

>mRNA_M-pyrifera_M_contig89270.20689.1 ID=mRNA_M-pyrifera_M_contig89270.20689.1|Name=mRNA_M-pyrifera_M_contig89270.20689.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1590bp|location=Sequence derived from alignment at M-pyrifera_M_contig89270:13..807- (Macrocystis pyrifera P11B4 male)
AACACGCGCCTGATTAACACGCTGAAAAAACTGCGGGACATCGGCAATAC
AATTGTGATGGTCGAGCATGACCGCGAAGTGCTTGAAGCGTCTGACTGTC
TCTATGATTTCGGGCCCGGTGCCGGCCGCTTTGGCGGGACGATTGTCGGA
AAAGGTTCCCCAAAGCAGTTGAAGCGTAGCAAAAAGTCGATGACCGGTCA
GTATCTGGCCGATCAGAGGACGATTGCCATCCCCAGTGAGCGGCGTGTGA
TCTATGAAAAACAGGGGAAAGCAGACGTTCCGCTTTCGCCCACCGGACAC
TGGCTGGAACTGACCGGCGCCCGCCACCACAATCTGCAGTCCGTCGATCT
TCAGATTCCGCTCGGCTCATTCACCTGTATTACAGGCGTTTCCGGATCGG
GTAAGAGTTCACTCATCGAAGAAACACTGGCCCGGGCGGTGACGAAAAAA
CTGCATCGCGCCAAGGAAGCCCCCGGTCCCTACCAGGATCTGCTGGGACT
GGATCAGATCAATAAAGCGATCATCGTCGATCAGCGTCCCCTGGGGAACA
CACCCGCATCAAACCCCGCGACTTATACCGGTGTGTTCGATCAGATTCGC
GAACTCTTCTCGCGACTGCCGGAAGCGAAGGTGCGCGGCTATCAACCCGG
CCGCTTCAGCTTTAACCGATCCGGGGGCCGTTGTGAAGACTGTGAGGGCA
ACGGTCAGCGGTGTATTGAGATGCACTTCCTGCCCGATGTCTGGGTGACC
TGTGAAACCTGTAACGGCAAACGTTACAACCAGGAAACGCTCTAGAACAC
GCGCCTGATTAACACGCTGAAAAAACTGCGGGACATCGGCAATACAATTG
TGATGGTCGAGCATGACCGCGAAGTGCTTGAAGCGTCTGACTGTCTCTAT
GATTTCGGGCCCGGTGCCGGCCGCTTTGGCGGGACGATTGTCGGAAAAGG
TTCCCCAAAGCAGTTGAAGCGTAGCAAAAAGTCGATGACCGGTCAGTATC
TGGCCGATCAGAGGACGATTGCCATCCCCAGTGAGCGGCGTGTGATCTAT
GAAAAACAGGGGAAAGCAGACGTTCCGCTTTCGCCCACCGGACACTGGCT
GGAACTGACCGGCGCCCGCCACCACAATCTGCAGTCCGTCGATCTTCAGA
TTCCGCTCGGCTCATTCACCTGTATTACAGGCGTTTCCGGATCGGGTAAG
AGTTCACTCATCGAAGAAACACTGGCCCGGGCGGTGACGAAAAAACTGCA
TCGCGCCAAGGAAGCCCCCGGTCCCTACCAGGATCTGCTGGGACTGGATC
AGATCAATAAAGCGATCATCGTCGATCAGCGTCCCCTGGGGAACACACCC
GCATCAAACCCCGCGACTTATACCGGTGTGTTCGATCAGATTCGCGAACT
CTTCTCGCGACTGCCGGAAGCGAAGGTGCGCGGCTATCAACCCGGCCGCT
TCAGCTTTAACCGATCCGGGGGCCGTTGTGAAGACTGTGAGGGCAACGGT
CAGCGGTGTATTGAGATGCACTTCCTGCCCGATGTCTGGGTGACCTGTGA
AACCTGTAACGGCAAACGTTACAACCAGGAAACGCTCTAG
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