mRNA_M-pyrifera_M_contig89269.20688.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig89269.20688.1 vs. uniprot
Match: A0A2E8L7T1_9ACTN (Ribonuclease H n=9 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8L7T1_9ACTN) HSP 1 Score: 353 bits (906), Expect = 5.680e-119 Identity = 166/269 (61.71%), Postives = 209/269 (77.70%), Query Frame = 1 Query: 1 DALRSLPGEVGVVSDSTYVVNCFRDGWWKGWIARGWKNSKKEPVANRDLWEPLIELYRSREDELTFRWVKGHDGNEWNDVADRLAVEASHTQRGRSGTGLPDDLGPADDLIGTLEPTEASPTADAEGRFGSTWRPTGGALVVLGLQPTGLGGYDENETTAGVRRQLVEIIEGKHRVDPTLVVLTGLRLGAETLGAEAARLAGVPYVAVLPYPDPDAKWPAPSRRRFAEVLESAASVVLLERKEPRSPQQAGQSMDRRNGWFRQVADEAV 807 DALR++ G V VVSDSTYVVNCFRDGWW GW+ RGWKNSKKE VANRD+WEPLI+LYRSRE E+TFRWVKGH G+E+ND+ADRLAVEASHT RGR G G PDDLGP D++ A+P +G + S+W PTG A++++G+QP LGGYD N VRRQ+ EI+ K + P LVV+TGLRLGAETL AEAA A +P+VAVLP+PDP+ KWPA ++RRF E++ A+++VLLE+K P + AG+++DRRNGW R++A EA+ Sbjct: 58 DALRTIEGSVEVVSDSTYVVNCFRDGWWNGWLKRGWKNSKKEAVANRDIWEPLIDLYRSREAEITFRWVKGHAGDEYNDIADRLAVEASHTGRGRHGVGTPDDLGPPDEINAGGSVPAAAPKPGPDGVYSSSWAPTGPAILIMGVQPPQLGGYDPNPIADEVRRQITEILVAKAELHPDLVVVTGLRLGAETLAAEAAAEAELPFVAVLPFPDPEIKWPAATQRRFHELIAEASAIVLLEKKVPADNRAAGRALDRRNGWLRKIATEAI 326
BLAST of mRNA_M-pyrifera_M_contig89269.20688.1 vs. uniprot
Match: A0A7K1ZAM2_9ACTN (Ribonuclease H n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1ZAM2_9ACTN) HSP 1 Score: 311 bits (796), Expect = 3.990e-102 Identity = 160/278 (57.55%), Postives = 190/278 (68.35%), Query Frame = 1 Query: 1 DALRSLPGEVG----VVSDSTYVVNCFRDGWWKGWIARGWKNSKKEPVANRDLWEPLIELYRSREDELTFRWVKGHDGNEWNDVADRLAVEASHTQRGRSGTGLPDDLGPADDLIGTLEPTEASPTADAEGRFGSTWRPTGGALVVLGLQ-----PTGLGGYDENETTAGVRRQLVEIIEGKHRVDPTLVVLTGLRLGAETLGAEAARLAGVPYVAVLPYPDPDAKWPAPSRRRFAEVLESAASVVLLERKEPRSPQQAGQSMDRRNGWFRQVADEAV 807 +ALR+L G +G VVSDSTYVVNCFRD WW GW+ R W+NS K+PVANRD+WEPLIELYR E+TF WVKGH GNEWNDVADRLA EAS TQ GR G G+PDDLG AD+ EP A + +WRP G + +LGLQ P G +D T R++L EI+ K +D LVVLTGLR GAETLGAEAA +GVPYV VLPYP+P KWPA R FA +LE AA VV L+RK P +P+ AG+++ RRN W R+VADEA+ Sbjct: 67 EALRALAGPLGGPVEVVSDSTYVVNCFRDRWWAGWLKRDWRNSNKQPVANRDIWEPLIELYREAPHEITFTWVKGHAGNEWNDVADRLAAEASRTQVGRDGVGMPDDLGEADES----EPPGAGERTTGDRADAGSWRPAGRCVAILGLQIGSTGPESTGPHDSRSVTT--RQRLAEILAAKKELDNDLVVLTGLRRGAETLGAEAAVESGVPYVVVLPYPNPAVKWPAADRNHFALMLEGAAKVVCLQRKVPTTPKNAGEALKRRNAWLRKVADEAL 338
BLAST of mRNA_M-pyrifera_M_contig89269.20688.1 vs. uniprot
Match: UPI001AA02048 (ribonuclease HI n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA02048) HSP 1 Score: 295 bits (754), Expect = 3.840e-96 Identity = 154/269 (57.25%), Postives = 192/269 (71.38%), Query Frame = 1 Query: 1 DALRSLPGEVGVVSDSTYVVNCFRDGWWKGWIARGWKNSKKEPVANRDLWEPLIELYRSREDELTFRWVKGHDGNEWNDVADRLAVEASHTQRGRSGTGLPDDLGPADDLIGTLEPTEASPTADAEGRFGSTWRPTGGALVVLGLQPTGLGGYDENETTAGVRRQLVEIIEGKHRVDPTLVVLTGLRLGAETLGAEAARLAGVPYVAVLPYPDPDAKWPAPSRRRFAEVLESAASVVLLERKEPRSPQQAGQSMDRRNGWFRQVADEAV 807 +A+R+ PG + VVSDSTYVVNCFRD WW+GW+ RGWKNS+++PVANRDLWEPL+EL R+R D +TFRWVKGH G+ N++ DRLAVEA+ QRGRSG G P +LGPAD +G +P ADA G LVV G +P LGGY +N A VRR+LVEI+ KH + LVV+TGLRLGAE LGA+AAR AGVPY+ VLPYP P+ WP S+ +F ++L+ A V+ LERKEPRS QQAG ++ RR+ W + A EAV Sbjct: 49 EAVRANPGRLEVVSDSTYVVNCFRDRWWEGWLERGWKNSQRKPVANRDLWEPLVELVRARGD-VTFRWVKGHGGDPMNELVDRLAVEAALEQRGRSGIGPPPELGPADQ-VGRPQPAAL---ADAP--------LPGHPLVVFGHRPPELGGYGDNPVAAEVRRKLVEILRAKHELFADLVVVTGLRLGAEMLGAQAAREAGVPYLVVLPYPHPEKVWPDESQHQFRDLLDDAIDVITLERKEPRSKQQAGAALARRDAWLARHAAEAV 304
BLAST of mRNA_M-pyrifera_M_contig89269.20688.1 vs. uniprot
Match: A0A6J4J3F3_9ACTN (Ribonuclease H n=1 Tax=uncultured Acidimicrobiales bacterium TaxID=310071 RepID=A0A6J4J3F3_9ACTN) HSP 1 Score: 281 bits (718), Expect = 1.260e-90 Identity = 143/269 (53.16%), Postives = 182/269 (67.66%), Query Frame = 1 Query: 1 DALRSLPGEVGVVSDSTYVVNCFRDGWWKGWIARGWKNSKKEPVANRDLWEPLIELYRSREDELTFRWVKGHDGNEWNDVADRLAVEASHTQRGRSGTGLPDDLGPADDLIGTLEPTEASPTADAEGRFGSTWRPTGGALVVLGLQPTGLGGYDENETTAGVRRQLVEIIEGKHRVDPTLVVLTGLRLGAETLGAEAARLAGVPYVAVLPYPDPDAKWPAPSRRRFAEVLESAASVVLLERKEPRSPQQAGQSMDRRNGWFRQVADEAV 807 +A+RSL G + VVSDSTYVVNCFRD WW+GW+ARGW N K+PVANRDLWEPLI+ RS +TFRWVKGH + ND+ DRLAVEA+ TQ GRSG PD LGPAD P AD + R P G L V+G +P LGGYD N + VR ++ +++ K +V+P LVVLTGL LG+E L AEAA AGVPYVAVLPYPDPD++WP+ SR+ F +++ A + V+L+ K P + Q AG ++ RR+ W + A EA+ Sbjct: 58 EAVRSLEGPLVVVSDSTYVVNCFRDRWWEGWLARGWMNKAKKPVANRDLWEPLIDAIRSDPSRVTFRWVKGHSDDPANDLVDRLAVEAARTQEGRSGDDPPDSLGPAD---------TPGPGADLDPRL-----PPGHLLAVIGHKPPELGGYDANPVSDAVRAKVAQVLAAKRQVNPDLVVLTGLGLGSEQLAAEAAAEAGVPYVAVLPYPDPDSQWPSSSRKAFQALVDGARATVVLQGKPPATKQLAGAALRRRDAWLGRHAHEAI 312
BLAST of mRNA_M-pyrifera_M_contig89269.20688.1 vs. uniprot
Match: A0A6G0A4B6_9ACTN (Ribonuclease H n=2 Tax=Bacteria TaxID=2 RepID=A0A6G0A4B6_9ACTN) HSP 1 Score: 279 bits (713), Expect = 6.160e-90 Identity = 143/269 (53.16%), Postives = 184/269 (68.40%), Query Frame = 1 Query: 1 DALRSLPGEVGVVSDSTYVVNCFRDGWWKGWIARGWKNSKKEPVANRDLWEPLIELYRSREDELTFRWVKGHDGNEWNDVADRLAVEASHTQRGRSGTGLPDDLGPADDLIGTLEPTEASPTADAEGRFGSTWRPTGGALVVLGLQPTGLGGYDENETTAGVRRQLVEIIEGKHRVDPTLVVLTGLRLGAETLGAEAARLAGVPYVAVLPYPDPDAKWPAPSRRRFAEVLESAASVVLLERKEPRSPQQAGQSMDRRNGWFRQVADEAV 807 +A+RSL G + VVSDSTYVV CF DGWW+GW+ RGW+ ++++ VANRDLWEP IEL R D ++FRWVKGH + ND+ADRLAVEA +RGRSG LP D+GP D + +DA R + P+G L V G +P LGGY+ N+ GVR +LV+I+ K ++ LVVLTGLRLGAE LGAEAA AGVP+VAVLPYPDP + WP S+ RF E++ +AA VV LERK P S ++ G+++ RR+GW DEA+ Sbjct: 50 EAVRSLDGPLEVVSDSTYVVRCFNDGWWRGWVERGWRTAQRKEVANRDLWEPFIELVNERGD-ISFRWVKGHSEDPLNDLADRLAVEAIANRRGRSGEVLPTDVGPPDGAVAN---------SDARSRRADSRVPSGHLLGVFGHRPLELGGYEPNDLQDGVRSRLVDILSAKQQMHEDLVVLTGLRLGAEQLGAEAAAEAGVPFVAVLPYPDPQSAWPERSQARFRELVGAAAGVVQLERKVPGSNKEVGEALARRDGWLAANLDEAI 308
BLAST of mRNA_M-pyrifera_M_contig89269.20688.1 vs. uniprot
Match: A0A349BAY4_9ACTN (Ribonuclease H n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349BAY4_9ACTN) HSP 1 Score: 277 bits (708), Expect = 4.370e-89 Identity = 146/268 (54.48%), Postives = 181/268 (67.54%), Query Frame = 1 Query: 4 ALRSLPGEVGVVSDSTYVVNCFRDGWWKGWIARGWKNSKKEPVANRDLWEPLIELYRSREDELTFRWVKGHDGNEWNDVADRLAVEASHTQRGRSGTGLPDDLGPADDLIGTLEPTEASPTADAEGRFGSTWRPTGGALVVLGLQPTGLGGYDENETTAGVRRQLVEIIEGKHRVDPTLVVLTGLRLGAETLGAEAARLAGVPYVAVLPYPDPDAKWPAPSRRRFAEVLESAASVVLLERKEPRSPQQAGQSMDRRNGWFRQVADEAV 807 A+++ + VVSDSTYVVNCFRDGWW+GW+A+ WKNS+K+PVANRDLWEP IEL R R D + F WVKGH G+E ND+ADRLAV A+ TQ + G +PDDLG AD + AS D + R PTG L V G +P LGGYD N + V R+L EI+ K R+ P L V++GLRLGAE LGAEAA G+P VAVLP+PD DA WP SRRRFA++ +AA+ VLLERK P S + S+ RR+GW + DEA+ Sbjct: 52 AVQAHDEPLTVVSDSTYVVNCFRDGWWRGWLAKDWKNSQKKPVANRDLWEPFIELVRERGD-VDFEWVKGHGGDEMNDIADRLAVAAAETQTEQEGDQVPDDLGDADAVGPAPAGAPASAAPDRDRRL-----PTGRLLGVFGARPPELGGYDANPVSDAVGRRLQEILAAKARMHPDLHVVSGLRLGAEMLGAEAAVAEGIPVVAVLPFPDADAPWPEKSRRRFADLRSAAATEVLLERKVPESKAKVAGSLRRRDGWLAKNLDEAI 313
BLAST of mRNA_M-pyrifera_M_contig89269.20688.1 vs. uniprot
Match: A0A2W6DIT5_9ACTN (Ribonuclease H n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A2W6DIT5_9ACTN) HSP 1 Score: 274 bits (700), Expect = 5.350e-88 Identity = 142/269 (52.79%), Postives = 178/269 (66.17%), Query Frame = 1 Query: 1 DALRSLPGEVGVVSDSTYVVNCFRDGWWKGWIARGWKNSKKEPVANRDLWEPLIELYRSREDELTFRWVKGHDGNEWNDVADRLAVEASHTQRGRSGTGLPDDLGPADDLIGTLEPTEASPTADAEGRFGSTWRPTGGALVVLGLQPTGLGGYDENETTAGVRRQLVEIIEGKHRVDPTLVVLTGLRLGAETLGAEAARLAGVPYVAVLPYPDPDAKWPAPSRRRFAEVLESAASVVLLERKEPRSPQQAGQSMDRRNGWFRQVADEAV 807 +A+ +LPG + VVSDSTYVVNCFRD WW+GW+ARGW+N K+PVANRDLWEPL+E R+ ++FRWVKGH + ND+ DRLAVEA+ QRGR+G G P DLG AD T + A G G T P G +VV G +P LGGYD+N R +L EI+ K + P LVVLTGL LGAE LGAEAA A VPYVAVL YPDPD WPAPS+ F E+L A++ ++LE + P + AG ++ RR+ W + A EA+ Sbjct: 45 EAVTALPGPLQVVSDSTYVVNCFRDRWWEGWMARGWRNKAKQPVANRDLWEPLVEAVRADPGRVSFRWVKGHGTDAVNDLVDRLAVEAARNQRGRTGLGTPADLGSAD--------TVGRRGSAAVGAAG-TAAPEGHLIVVTGHRPPALGGYDDNPVADRTRHELAEILAAKRVLHPDLVVLTGLGLGAEQLGAEAAAAADVPYVAVLAYPDPDTMWPAPSKAHFRELLAGASATIVLESRAPATRPLAGAALRRRDAWLARNAAEAL 304
BLAST of mRNA_M-pyrifera_M_contig89269.20688.1 vs. uniprot
Match: UPI0018983993 (hypothetical protein n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=UPI0018983993) HSP 1 Score: 268 bits (685), Expect = 2.490e-85 Identity = 144/271 (53.14%), Postives = 182/271 (67.16%), Query Frame = 1 Query: 1 DALRSLPGEVGVVSDSTYVVNCFRDGWWKGWIARGWKNSKKEPVANRDLWEPLIELYRSREDELTFRWVKGHDGNEWNDVADRLAVEASHTQRGRSGTGLPDDLGPADDLIGTLEPTEASPTADA--EGRFGSTWRPTGGALVVLGLQPTGLGGYDENETTAGVRRQLVEIIEGKHRVDPTLVVLTGLRLGAETLGAEAARLAGVPYVAVLPYPDPDAKWPAPSRRRFAEVLESAASVVLLERKEPRSPQQAGQSMDRRNGWFRQVADEAV 807 +A+R+ G V VVSDSTYVVNCFRD WW+GWI RGW NSKKEPVANRDLWEP +EL R R D +TFRWVKGH G+ ND+ADRLAV A+ +Q G SG+ PD D G + +P+A A +GR + G + V G +P LGGY N GVR +L ++ + +DP LVV++GLRLGAE LGAEAA G+P VAVLP+PDPDA+W A +R RFA++L+ A VV LERK PR+ Q+ G S+ RR+GW + A+ Sbjct: 71 EAVRAATGPVEVVSDSTYVVNCFRDRWWEGWIRRGWTNSKKEPVANRDLWEPFVELVRERGD-VTFRWVKGHGGDPLNDIADRLAVAAAASQLGASGSTHPDVTKLPTDPTGAV----GAPSAGARRDGRLPAAPIAESG-VAVFGHRPPELGGYGPNPIADGVRDELRRVLAARREMDPDLVVVSGLRLGAEQLGAEAAVSLGLPLVAVLPHPDPDARWSADARTRFADLLDRAEEVVTLERKVPRNSQEVGSSLARRDGWLARNVAAAI 335
BLAST of mRNA_M-pyrifera_M_contig89269.20688.1 vs. uniprot
Match: A0A7W1E0S9_9ACTN (Ribonuclease H n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W1E0S9_9ACTN) HSP 1 Score: 264 bits (674), Expect = 2.680e-84 Identity = 137/269 (50.93%), Postives = 177/269 (65.80%), Query Frame = 1 Query: 1 DALRSLPGEVGVVSDSTYVVNCFRDGWWKGWIARGWKNSKKEPVANRDLWEPLIELYRSREDELTFRWVKGHDGNEWNDVADRLAVEASHTQRGRSGTGLPDDLGPADDLIGTLEPTEASPTADAEGRFGSTWRPTGGALVVLGLQPTGLGGYDENETTAGVRRQLVEIIEGKHRVDPTLVVLTGLRLGAETLGAEAARLAGVPYVAVLPYPDPDAKWPAPSRRRFAEVLESAASVVLLERKEPRSPQQAGQSMDRRNGWFRQVADEAV 807 +ALR++ G V VVSDSTYVVNCFRD WW+GWIARGWKNS K+ VAN+DLW+PLIELYRSR E+ FRWVKGH + ND+ D+LAV A+ Q+ +G G+P+ + L+P P G + V+G +P LGGYD N A V R+L E+++ K ++ LVV+TGL LGAE LGA AA AGVP+VAVLPYPD D+ WPA SR + +L +AA V+L+ K P + QQAG ++ RR+GW ADEA+ Sbjct: 45 EALRAIDGAVEVVSDSTYVVNCFRDRWWEGWIARGWKNSAKKDVANQDLWKPLIELYRSRASEIEFRWVKGHSEDVMNDLVDQLAVRAAQLQQADTGEGVPEVS------VEDLDPRV----------------PPGHRVAVIGHRPPALGGYDANPIVAEVERRLTEVLDAKRQLHDDLVVMTGLGLGAEQLGARAALAAGVPFVAVLPYPDQDSVWPALSRAGYKSLLAAAARTVVLQPKAPSNRQQAGGALARRDGWLAGNADEAI 291
BLAST of mRNA_M-pyrifera_M_contig89269.20688.1 vs. uniprot
Match: A0A7V9V8N2_9ACTN (Ribonuclease H n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9V8N2_9ACTN) HSP 1 Score: 263 bits (673), Expect = 1.020e-83 Identity = 141/269 (52.42%), Postives = 172/269 (63.94%), Query Frame = 1 Query: 1 DALRSLPGEVGVVSDSTYVVNCFRDGWWKGWIARGWKNSKKEPVANRDLWEPLIELYRSREDELTFRWVKGHDGNEWNDVADRLAVEASHTQRGRSGTGLPDDLGPADDLIGTLEPTEASPTADAEGRFGSTWRPTGGALVVLGLQPTGLGGYDENETTAGVRRQLVEIIEGKHRVDPTLVVLTGLRLGAETLGAEAARLAGVPYVAVLPYPDPDAKWPAPSRRRFAEVLESAASVVLLERKEPRSPQQAGQSMDRRNGWFRQVADEAV 807 +A+ SL G + VVSDSTYVVNCFRD WW+GW+ARGW N K+PVANRDLWEPLI+ RS + F WVKGH + ND+ DRLAVEA+ +QRGRSG G+P+ LG A DL+ P +D P G LVV G +P LGGY+EN + GVR QL I+ K V+P LVVLTGL LG E LGAEAA V YVAVL +P + WPA +R R+ +LE A VLL+ K P S Q AG ++ RR+ W + A EAV Sbjct: 67 EAVTSLEGPLEVVSDSTYVVNCFRDRWWEGWLARGWLNKAKKPVANRDLWEPLIDAVRSDPQRVGFTWVKGHSADRMNDLVDRLAVEAARSQRGRSGEGMPEGLG-APDLV------PVGPDSDPR-------VPEGHRLVVAGHRPPALGGYEENTVSEGVREQLRRILAAKRVVNPDLVVLTGLGLGTEQLGAEAAVAVDVGYVAVLAFPSQEQVWPASTRERYRRLLEGATGQVLLQAKAPESKQSAGMALRRRDAWLARHAHEAV 321 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig89269.20688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig89269.20688.1 >prot_M-pyrifera_M_contig89269.20688.1 ID=prot_M-pyrifera_M_contig89269.20688.1|Name=mRNA_M-pyrifera_M_contig89269.20688.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=269bp DALRSLPGEVGVVSDSTYVVNCFRDGWWKGWIARGWKNSKKEPVANRDLWback to top mRNA from alignment at M-pyrifera_M_contig89269:1..807- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig89269.20688.1 ID=mRNA_M-pyrifera_M_contig89269.20688.1|Name=mRNA_M-pyrifera_M_contig89269.20688.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=807bp|location=Sequence derived from alignment at M-pyrifera_M_contig89269:1..807- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig89269:1..807- >mRNA_M-pyrifera_M_contig89269.20688.1 ID=mRNA_M-pyrifera_M_contig89269.20688.1|Name=mRNA_M-pyrifera_M_contig89269.20688.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1614bp|location=Sequence derived from alignment at M-pyrifera_M_contig89269:1..807- (Macrocystis pyrifera P11B4 male)back to top |