mRNA_M-pyrifera_M_contig109902.2067.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig109902.2067.1 vs. uniprot
Match: A0A2D8IS05_9GAMM (Integrase n=2 Tax=Haliea TaxID=475794 RepID=A0A2D8IS05_9GAMM) HSP 1 Score: 290 bits (741), Expect = 3.430e-95 Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1
Query: 1 WTIPGERMKGGRDHKVPLCHEAVDLLKSLPRDHDSEVIFVSPTGKMLSNMTLTKVLKDMGHQVTQHGFRATFRTWAQEHTSYPEEVCELALAHVNSDATRAAYARSELIEKRRKLMADWERFCREGLPSKGKENKIRAR 417
WTIPGERMKGGRDHKVPLCHEAVDLLKSLPRDHDSEVIFVSPTGKMLSNMTLTKVLKDMGHQVTQHGFRATFRTWAQEHTSYPEEVCELALAHVNSDATRAAYARSELIEKRRKLMADWERFCREGLPSKGKENKIRAR
Sbjct: 291 WTIPGERMKGGRDHKVPLCHEAVDLLKSLPRDHDSEVIFVSPTGKMLSNMTLTKVLKDMGHQVTQHGFRATFRTWAQEHTSYPEEVCELALAHVNSDATRAAYARSELIEKRRKLMADWERFCREGLPSKGKENKIRAR 429
BLAST of mRNA_M-pyrifera_M_contig109902.2067.1 vs. uniprot
Match: A0A2E3P3L8_9PROT (Integrase n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2E3P3L8_9PROT) HSP 1 Score: 262 bits (669), Expect = 2.960e-84 Identity = 125/139 (89.93%), Postives = 129/139 (92.81%), Query Frame = 1
Query: 1 WTIPGERMKGGRDHKVPLCHEAVDLLKSLPRDHDSEVIFVSPTGKMLSNMTLTKVLKDMGHQVTQHGFRATFRTWAQEHTSYPEEVCELALAHVNSDATRAAYARSELIEKRRKLMADWERFCREGLPSKGKENKIRAR 417
WTIP ERMKGGRDHKVPLC EAVDLLKSLPRDHDS +IFVSPTGKMLSNMTLTKVLKDMGHQVTQHGFRATFRTWAQEHT+YPEEVCELALAHVNSDATR AYARSELI+KRRKLMADWERFCREGLP+ K IR R
Sbjct: 291 WTIPCERMKGGRDHKVPLCREAVDLLKSLPRDHDSNLIFVSPTGKMLSNMTLTKVLKDMGHQVTQHGFRATFRTWAQEHTTYPEEVCELALAHVNSDATRVAYARSELIDKRRKLMADWERFCREGLPATAKMKSIRGR 429
BLAST of mRNA_M-pyrifera_M_contig109902.2067.1 vs. uniprot
Match: A0A356VJ65_9GAMM (Integrase n=2 Tax=Halieaceae bacterium TaxID=2026743 RepID=A0A356VJ65_9GAMM) HSP 1 Score: 197 bits (501), Expect = 3.080e-59 Identity = 96/136 (70.59%), Postives = 113/136 (83.09%), Query Frame = 1
Query: 1 WTIPGERMKGGRDHKVPLCHEAVDLLKSLPRDHDSEVIFVSPTGKMLSNMTLTKVLKDMGHQVTQHGFRATFRTWAQEHTSYPEEVCELALAHVNSDATRAAYARSELIEKRRKLMADWERFCREGLPSKGKENKI 408
WTIP ERMKGGR HKVPLC AV LL+SL RD SE +F + G LS+++++KV K +GH VT HGFRATFRTWAQEHT+Y +EVCELALAHVNSD+TRAAYARSEL++KRR LM DWERFCREGLP++GK +I
Sbjct: 277 WTIPAERMKGGRAHKVPLCTSAVSLLESLSRD--SEYLFHNTKGGPLSDVSVSKVPKQLGHDVTVHGFRATFRTWAQEHTNYRDEVCELALAHVNSDSTRAAYARSELLDKRRLLMQDWERFCREGLPARGKVIRI 410
BLAST of mRNA_M-pyrifera_M_contig109902.2067.1 vs. uniprot
Match: A0A2N5Y2N9_9GAMM (Integrase n=2 Tax=Kineobactrum sediminis TaxID=1905677 RepID=A0A2N5Y2N9_9GAMM) HSP 1 Score: 196 bits (497), Expect = 2.110e-58 Identity = 92/136 (67.65%), Postives = 111/136 (81.62%), Query Frame = 1
Query: 1 WTIPGERMKGGRDHKVPLCHEAVDLLKSLPRDHDSEVIFVSPTGKMLSNMTLTKVLKDMGHQVTQHGFRATFRTWAQEHTSYPEEVCELALAHVNSDATRAAYARSELIEKRRKLMADWERFCREGLPSKGKENKI 408
WTI RMK G+ HKVPLC+ A+D+LK+LPRDHD +IF + G LS++TL KV KDMGH VTQHGFR++FRTWAQEHT+Y +EVCELALAHVNSDA+RAAYARSELI+KRR LM DWE+FC+ GLP +N +
Sbjct: 297 WTIDANRMKEGKSHKVPLCNAAIDILKALPRDHD--LIFPNRNGDRLSDVTLVKVAKDMGHAVTQHGFRSSFRTWAQEHTTYADEVCELALAHVNSDASRAAYARSELIDKRRLLMNDWEQFCKYGLPEDTGDNVV 430
BLAST of mRNA_M-pyrifera_M_contig109902.2067.1 vs. uniprot
Match: A0A2A2F910_9GAMM (Integrase n=1 Tax=Halovibrio salipaludis TaxID=2032626 RepID=A0A2A2F910_9GAMM) HSP 1 Score: 168 bits (426), Expect = 6.630e-48 Identity = 78/128 (60.94%), Postives = 99/128 (77.34%), Query Frame = 1
Query: 1 WTIPGERMKGGRDHKVPLCHEAVDLLKSLPRDHDSEVIFVSPTGKMLSNMTLTKVLKDMGHQVTQHGFRATFRTWAQEHTSYPEEVCELALAHVNSDATRAAYARSELIEKRRKLMADWERFCREGLP 384
WT+P ERMK G++H +PLC EAV +L+S+P+ +++F P G + SN L+ +LK M VT HGFR+TF+ WA++HT Y +EV ELALAHVN+DATRAAYARS LIEKRR+LM DWERF REGLP
Sbjct: 289 WTVPAERMKTGKEHTIPLCDEAVAILQSVPQGGPDDLVFAGPKGDIPSNNFLSSLLKRMEVPVTAHGFRSTFKDWARKHTGYADEVSELALAHVNTDATRAAYARSGLIEKRRQLMGDWERFTREGLP 416
BLAST of mRNA_M-pyrifera_M_contig109902.2067.1 vs. uniprot
Match: UPI001D11FC59 (site-specific integrase n=2 Tax=Marinobacter zhanjiangensis TaxID=578215 RepID=UPI001D11FC59) HSP 1 Score: 166 bits (419), Expect = 6.990e-48 Identity = 77/136 (56.62%), Postives = 99/136 (72.79%), Query Frame = 1
Query: 1 WTIPGERMKGGRDHKVPLCHEAVDLLKSLPRDHDSEVIFVSPTGKMLSNMTLTKVLKDMGHQVTQHGFRATFRTWAQEHTSYPEEVCELALAHVNSDATRAAYARSELIEKRRKLMADWERFCREGLPSKGKENKI 408
WT+P +RMK G+ H+VPL A+DLLK + + +++F P G + SN L+ +LK M VT HGFR+TF+ WA+EHT+YP+EV ELALAHVNSDATRAAYARSELI+KRR LMADWE++C G K K+
Sbjct: 185 WTVPADRMKSGKLHRVPLTDTAIDLLKGMEQGKPEDLVFPGPKGDVPSNNFLSALLKRMDQPVTSHGFRSTFKDWAREHTAYPDEVSELALAHVNSDATRAAYARSELIDKRRLLMADWEQYCYHGEAQKDDSGKV 320
BLAST of mRNA_M-pyrifera_M_contig109902.2067.1 vs. uniprot
Match: A0A142FLK0_9GAMM (Integrase n=1 Tax=Marinobacter sp. LQ44 TaxID=1749259 RepID=A0A142FLK0_9GAMM) HSP 1 Score: 165 bits (418), Expect = 1.030e-46 Identity = 78/138 (56.52%), Postives = 102/138 (73.91%), Query Frame = 1
Query: 1 WTIPGERMKGGRDHKVPLCHEAVDLLKSLPRDHDSEVIFVSPTGKMLSNMTLTKVLKDMGHQVTQHGFRATFRTWAQEHTSYPEEVCELALAHVNSDATRAAYARSELIEKRRKLMADWERFCREGLPSKGKENKIRA 414
WT+P +RMK G++H+VPL + A+DLLK + + ++IF P G + SN L+ +LK M VT HGFR+TF+ WA+EHT+Y +EV ELALAHVNSDATRAAYARSELI+KRR LMADWE++C G K + K+ A
Sbjct: 289 WTVPADRMKSGKEHRVPLTNAAMDLLKGMEQGKPDDLIFPGPKGDIPSNNFLSALLKRMDQPVTAHGFRSTFKDWAREHTAYADEVSELALAHVNSDATRAAYARSELIDKRRLLMADWEQYCYHGKAKKEEGGKVVA 426
BLAST of mRNA_M-pyrifera_M_contig109902.2067.1 vs. uniprot
Match: UPI0019D41D81 (site-specific integrase n=1 Tax=Marinobacter sp. LPB0319 TaxID=2769486 RepID=UPI0019D41D81) HSP 1 Score: 163 bits (413), Expect = 5.660e-46 Identity = 81/134 (60.45%), Postives = 101/134 (75.37%), Query Frame = 1
Query: 1 WTIPGERMKGGRDHKVPLCHEAVDLLKSLPRDHDSEVIFVSPTGKMLSNMTLTKVLKDMGHQVTQHGFRATFRTWAQEHTSYPEEVCELALAHVNSDATRAAYARSELIEKRRKLMADWERFCREGLPSKGKEN 402
WT+P +RMK G++H+VPL AV+LLK +P +++IF P G + SN LT +LK M + T HGFR+TF+ WA+E TSY +EV ELALAHVNSDATRAAYARSELI+KRR LMADWE+FC EG K +EN
Sbjct: 290 WTVPAQRMKSGKEHRVPLSETAVNLLKDMPPGEPNQLIFPGPKGDIPSNNFLTALLKRMEIESTIHGFRSTFKDWARECTSYADEVSELALAHVNSDATRAAYARSELIDKRRLLMADWEKFCTEG--EKAQEN 421
BLAST of mRNA_M-pyrifera_M_contig109902.2067.1 vs. uniprot
Match: UPI001C2D34AD (site-specific integrase n=1 Tax=Marinobacterium ramblicola TaxID=2849041 RepID=UPI001C2D34AD) HSP 1 Score: 163 bits (412), Expect = 6.920e-46 Identity = 79/127 (62.20%), Postives = 99/127 (77.95%), Query Frame = 1
Query: 1 WTIPGERMKGGRDHKVPLCHEAVDLLKSLPRDHDSEVIFVSPT-GKMLSNMTLTKVLKDMGHQVTQHGFRATFRTWAQEHTSYPEEVCELALAHVNSDATRAAYARSELIEKRRKLMADWERFCREG 378
WTIP ERMKGG+ HK+PL AV L+++ PR SE +F P G+ ++++ ++KV K +GH VT HGFR+TFRTWAQE+TSY EE+CELALAHVNSDATRAAYAR EL++KRR LM+DWE F G
Sbjct: 283 WTIPAERMKGGKAHKIPLTASAVKLVEAQPRL--SEYVFAGPRKGRPITDVAVSKVPKLLGHDVTAHGFRSTFRTWAQEYTSYAEEICELALAHVNSDATRAAYARGELVDKRRLLMSDWEHFILNG 407
BLAST of mRNA_M-pyrifera_M_contig109902.2067.1 vs. uniprot
Match: A0A6N7M0Z7_9GAMM (DUF4102 domain-containing protein n=1 Tax=Alcanivorax sediminis TaxID=2663008 RepID=A0A6N7M0Z7_9GAMM) HSP 1 Score: 161 bits (408), Expect = 2.120e-45 Identity = 75/123 (60.98%), Postives = 95/123 (77.24%), Query Frame = 1
Query: 1 WTIPGERMKGGRDHKVPLCHEAVDLLKSLPRDHDSEVIFVSPTGKMLSNMTLTKVLKDMGHQVTQHGFRATFRTWAQEHTSYPEEVCELALAHVNSDATRAAYARSELIEKRRKLMADWERFC 369
WTIP +RMK G+ HKVPLC +AV++L+ +PR S+ IF +P G S++ LT +LK M + T HGFR+TF+ WA+E TSY +EV ELALAHVNSDATRAAYARSELI+KRR+LMA+W F
Sbjct: 282 WTIPADRMKAGKPHKVPLCPDAVEILREIPRFEGSDFIFTAPRGGKFSDVALTALLKRMDIKATAHGFRSTFKDWAREQTSYADEVSELALAHVNSDATRAAYARSELIDKRRQLMAEWAAFA 404 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109902.2067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig109902.2067.1 >prot_M-pyrifera_M_contig109902.2067.1 ID=prot_M-pyrifera_M_contig109902.2067.1|Name=mRNA_M-pyrifera_M_contig109902.2067.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp MKGGRDHKVPLCHEAVDLLKSLPRDHDSEVIFVSPTGKMLSNMTLTKVLKback to top mRNA from alignment at M-pyrifera_M_contig109902:182..601- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig109902.2067.1 ID=mRNA_M-pyrifera_M_contig109902.2067.1|Name=mRNA_M-pyrifera_M_contig109902.2067.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig109902:182..601- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig109902:182..601- >mRNA_M-pyrifera_M_contig109902.2067.1 ID=mRNA_M-pyrifera_M_contig109902.2067.1|Name=mRNA_M-pyrifera_M_contig109902.2067.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig109902:182..601- (Macrocystis pyrifera P11B4 male)back to top |