mRNA_M-pyrifera_M_contig109825.2056.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109825.2056.1
Unique NamemRNA_M-pyrifera_M_contig109825.2056.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109825.2056.1 vs. uniprot
Match: A0A2E7KHU6_9PLAN (Uncharacterized protein n=8 Tax=Bacteria TaxID=2 RepID=A0A2E7KHU6_9PLAN)

HSP 1 Score: 230 bits (587), Expect = 2.070e-72
Identity = 116/120 (96.67%), Postives = 118/120 (98.33%), Query Frame = 1
Query:    4 MPIKFYCKHCGQRLSVASKKAGKKVACPACKGRITIPVESEARRMEKTPDPSETPGKKASSSTKXXKPAKAAPPTEAMLDADQNQFLEDLDDMGPLGESWDELLDGDWDAAASAETEEPA 363
            MPIKFYCKHCGQRLSVASKKAGKKVACPACKGRITIPVESEARR+EKTPDPSETPG+KASSSTK  KPAKAAPPTEAMLDADQNQFLEDLDDMGPLGESWDELLDGDWDAAASAETEEPA
Sbjct:    1 MPIKFYCKHCGQRLSVASKKAGKKVACPACKGRITIPVESEARRIEKTPDPSETPGQKASSSTKKKKPAKAAPPTEAMLDADQNQFLEDLDDMGPLGESWDELLDGDWDAAASAETEEPA 120          
BLAST of mRNA_M-pyrifera_M_contig109825.2056.1 vs. uniprot
Match: A0A518A7Y9_9PLAN (Biopolymer transport protein ExbD n=6 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A7Y9_9PLAN)

HSP 1 Score: 186 bits (471), Expect = 6.460e-55
Identity = 91/120 (75.83%), Postives = 103/120 (85.83%), Query Frame = 1
Query:    4 MPIKFYCKHCGQRLSVASKKAGKKVACPACKGRITIPVESEARRMEKTPDPSETPGKKASSSTKXXKPAKAAPPTEAMLDADQNQFLEDLDDMGPLGESWDELLDGDWDAAASAETEEPA 363
            MPIKFYCKHCGQRLSVASKKAGKKVACPAC+GRITIP ESEARR EKT +  E+P KK+ +ST   KP   APPTE MLDADQNQFLE+LDD+GPLGESWDELLDGDW++A + E++ PA
Sbjct:    1 MPIKFYCKHCGQRLSVASKKAGKKVACPACQGRITIPAESEARRTEKTAETEESPPKKSPASTNKKKPTPKAPPTEPMLDADQNQFLEELDDLGPLGESWDELLDGDWESAVAEESDRPA 120          
BLAST of mRNA_M-pyrifera_M_contig109825.2056.1 vs. uniprot
Match: A0A517RH47_9PLAN (Biopolymer transport protein ExbD n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RH47_9PLAN)

HSP 1 Score: 132 bits (331), Expect = 6.200e-35
Identity = 70/127 (55.12%), Postives = 85/127 (66.93%), Query Frame = 1
Query:    4 MPIKFYCKHCGQRLSVASKKAGKKVACPACKGRITIPVESEARRMEKTPDPSETPGKKASSSTKXXKPAKAAPPTEA--------MLDADQNQFLEDLDDMGPLGESWDELLDGDWDAAASAETEEP 360
            MPIKFYC  CGQRLS++SKKAGK V+CPAC  +ITIP++S+ARR E+T +                   +AAPPTEA         LD DQNQ L+DLDD+GPLGESWDELLD DW+ AA+ E  +P
Sbjct:    1 MPIKFYCNQCGQRLSISSKKAGKTVSCPACHKQITIPLKSQARRSEQTEN-------------------RAAPPTEADLSPQINTPLDQDQNQLLDDLDDLGPLGESWDELLDDDWEVAAAEEASQP 108          
BLAST of mRNA_M-pyrifera_M_contig109825.2056.1 vs. uniprot
Match: A0A517VW24_9PLAN (Biopolymer transport protein ExbD n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VW24_9PLAN)

HSP 1 Score: 121 bits (304), Expect = 5.470e-31
Identity = 61/115 (53.04%), Postives = 80/115 (69.57%), Query Frame = 1
Query:    4 MPIKFYCKHCGQRLSVASKKAGKKVACPACKGRITIPVESEARRMEKTPDPSETPGKKASSSTKXXKPAKAAPPTEAMLDADQNQFLEDLDDMGPLGESWDELLDGDWDAAASAE 348
            MPIKFYC+ CGQ+LSVASKKAGK V+CPAC+ +ITIP++SE RR E   +  + P            P     P    ++ ++NQ L+DLDD+GPLGESWDE+L+GDW+ AA+AE
Sbjct:    1 MPIKFYCQKCGQKLSVASKKAGKSVSCPACQRQITIPLKSEDRRTEVAENTPQAP------------PQTEKTPQATSVNQEENQLLDDLDDLGPLGESWDEILEGDWEQAAAAE 103          
BLAST of mRNA_M-pyrifera_M_contig109825.2056.1 vs. uniprot
Match: A0A518IE29_9PLAN (Biopolymer transport protein ExbD n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IE29_9PLAN)

HSP 1 Score: 118 bits (295), Expect = 1.260e-29
Identity = 67/127 (52.76%), Postives = 80/127 (62.99%), Query Frame = 1
Query:    4 MPIKFYCKHCGQRLSVASKKAGKKVACPACKGRITIPVESEARRMEKTPDPSETPGKKASSSTKXXKPAKAAPPTEA--------MLDADQNQFLEDLDDMGPLGESWDELLDGDWDAAASAETEEP 360
            MPIKFYC  CGQ+LSVA KKAGK V+CPAC G+ITIP ES+++R    P   ETP                APPTEA         LD +QNQ L+DLDD+GPLGESWDE+L+ D    A+ ET+ P
Sbjct:    1 MPIKFYCNQCGQKLSVARKKAGKSVSCPACSGQITIPFESQSQRP---PQSKETP----------------APPTEADLTPQVTAPLDQEQNQLLDDLDDLGPLGESWDEILEADSKETAAEETKPP 108          
BLAST of mRNA_M-pyrifera_M_contig109825.2056.1 vs. uniprot
Match: A6CAA9_9PLAN (Phospholipid/glycerol acyltransferase n=3 Tax=Gimesia maris TaxID=122 RepID=A6CAA9_9PLAN)

HSP 1 Score: 115 bits (287), Expect = 3.700e-28
Identity = 61/115 (53.04%), Postives = 74/115 (64.35%), Query Frame = 1
Query:    4 MPIKFYCKHCGQRLSVASKKAGKKVACPACKGRITIPVESEARRMEK------TPDPSETPGKKASSSTKXXKPAKAAPPTEAMLDADQNQFLEDLDDMGPLGESWDELLDGDWD 330
            MPIKFYCK CGQRLS+ SK+AGK VACPAC+ RITIP ESE +R +         +P   P KK   +          P  +  LD +Q+Q L DLDD+GP+GESWDELL GDW+
Sbjct:    1 MPIKFYCKKCGQRLSITSKRAGKAVACPACRSRITIPFESEDKRTDPPTTAPAAEEPPVPPRKKHPETV-------PTPAADTPLDEEQDQLLHDLDDLGPIGESWDELLAGDWE 108          
BLAST of mRNA_M-pyrifera_M_contig109825.2056.1 vs. uniprot
Match: A0A517VFP3_9PLAN (Biopolymer transport protein ExbD n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VFP3_9PLAN)

HSP 1 Score: 110 bits (276), Expect = 1.260e-26
Identity = 66/142 (46.48%), Postives = 75/142 (52.82%), Query Frame = 1
Query:    4 MPIKFYCKHCGQRLSVASKKAGKKVACPACKGRITIPVESEARRMEKTPDPSETPGKKASSSTKXXKPAKAAPPT---------------------EAMLDADQNQFLEDLDDMGPLGESWDELLDGDWDAAASAET-EEPA 363
            MPIKFYCK CGQRLS+ SKKAGK VACPACK RITIP ESE +  E                        AAPP                      +  LD +Q+Q L DLDD+GP+GESWDELL GDW+     E+  EPA
Sbjct:    1 MPIKFYCKKCGQRLSITSKKAGKAVACPACKSRITIPFESEEKHTEPP----------------------AAPPAXXXXXXXXXXXXXXXXXXXVADTPLDQEQDQLLHDLDDLGPIGESWDELLAGDWEQETEPESFSEPA 120          
BLAST of mRNA_M-pyrifera_M_contig109825.2056.1 vs. uniprot
Match: A0A2E8D989_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8D989_9PLAN)

HSP 1 Score: 68.2 bits (165), Expect = 3.980e-11
Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 IMPIKFYCKHCGQRLSVASKKAGKKVACPACKGRITIPVESEARRMEKTPD 153
            IMPI+F CKHCGQRLSV+S+KAG +  CP CK R+TIP ES++  +E+ P+
Sbjct:   13 IMPIRFACKHCGQRLSVSSRKAGARAKCPKCKERVTIP-ESDSESVEEPPE 62          
BLAST of mRNA_M-pyrifera_M_contig109825.2056.1 vs. uniprot
Match: A0A5C5X6H9_9PLAN (Biopolymer transport protein ExbD/TolR n=1 Tax=Thalassoglobus neptunius TaxID=1938619 RepID=A0A5C5X6H9_9PLAN)

HSP 1 Score: 53.1 bits (126), Expect = 7.690e-6
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 1
Query:    4 MPIKFYCKHCGQRLSVASKKAGKKVACPACKGRITIPV 117
            MPI F C HCGQ+LS+  +KAGK + CP C  R+ +PV
Sbjct:    1 MPILFRCSHCGQKLSITRRKAGKVITCPECVHRVKVPV 38          
BLAST of mRNA_M-pyrifera_M_contig109825.2056.1 vs. uniprot
Match: A0A2E7D4P5_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E7D4P5_9PLAN)

HSP 1 Score: 50.1 bits (118), Expect = 9.060e-5
Identity = 20/45 (44.44%), Postives = 30/45 (66.67%), Query Frame = 1
Query:    4 MPIKFYCKHCGQRLSVASKKAGKKVACPACKGRITIPVESEARRM 138
            MPI+F C  C Q +S+A+K AG+ VACP CK   T+P   + +++
Sbjct:    1 MPIRFRCSSCNQLISIATKMAGRDVACPTCKTACTVPQADQLQKV 45          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109825.2056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A2E7KHU6_9PLAN2.070e-7296.67Uncharacterized protein n=8 Tax=Bacteria TaxID=2 R... [more]
A0A518A7Y9_9PLAN6.460e-5575.83Biopolymer transport protein ExbD n=6 Tax=Gimesia ... [more]
A0A517RH47_9PLAN6.200e-3555.12Biopolymer transport protein ExbD n=1 Tax=Gimesia ... [more]
A0A517VW24_9PLAN5.470e-3153.04Biopolymer transport protein ExbD n=2 Tax=Gimesia ... [more]
A0A518IE29_9PLAN1.260e-2952.76Biopolymer transport protein ExbD n=1 Tax=Gimesia ... [more]
A6CAA9_9PLAN3.700e-2853.04Phospholipid/glycerol acyltransferase n=3 Tax=Gime... [more]
A0A517VFP3_9PLAN1.260e-2646.48Biopolymer transport protein ExbD n=1 Tax=Gimesia ... [more]
A0A2E8D989_9PLAN3.980e-1160.78Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
A0A5C5X6H9_9PLAN7.690e-655.26Biopolymer transport protein ExbD/TolR n=1 Tax=Tha... [more]
A0A2E7D4P5_9PLAN9.060e-544.44Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109825contigM-pyrifera_M_contig109825:2..364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score115.9
Seed ortholog evalue1.3e-23
Seed eggNOG ortholog344747.PM8797T_27070
KEGG koko:K03559
KEGG TC1.A.30.2.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Biopolymer transport protein
EggNOG OGs2J0ZY@203682,COG0848@1,COG0848@2
COG Functional cat.U
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size363
Cds size360
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.9027395-CDS-M-pyrifera_M_contig109825:1..3611622815608.9027395-CDS-M-pyrifera_M_contig109825:1..361Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109825 2..361 -
1692277485.6253507-CDS-M-pyrifera_M_contig109825:1..3611692277485.6253507-CDS-M-pyrifera_M_contig109825:1..361Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109825 2..361 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.913061-UTR-M-pyrifera_M_contig109825:361..3641622815608.913061-UTR-M-pyrifera_M_contig109825:361..364Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109825 362..364 -
1692277485.6376379-UTR-M-pyrifera_M_contig109825:361..3641692277485.6376379-UTR-M-pyrifera_M_contig109825:361..364Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109825 362..364 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109825.2056.1prot_M-pyrifera_M_contig109825.2056.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109825 2..361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109825.2056.1

>prot_M-pyrifera_M_contig109825.2056.1 ID=prot_M-pyrifera_M_contig109825.2056.1|Name=mRNA_M-pyrifera_M_contig109825.2056.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
MPIKFYCKHCGQRLSVASKKAGKKVACPACKGRITIPVESEARRMEKTPD
PSETPGKKASSSTKKKKPAKAAPPTEAMLDADQNQFLEDLDDMGPLGESW
DELLDGDWDAAASAETEEPA
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mRNA from alignment at M-pyrifera_M_contig109825:2..364-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109825.2056.1 ID=mRNA_M-pyrifera_M_contig109825.2056.1|Name=mRNA_M-pyrifera_M_contig109825.2056.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=363bp|location=Sequence derived from alignment at M-pyrifera_M_contig109825:2..364- (Macrocystis pyrifera P11B4 male)
ATTATGCCGATCAAGTTTTACTGTAAACACTGTGGCCAGAGATTGAGCGT GGCCAGCAAGAAAGCCGGGAAGAAAGTTGCCTGCCCGGCCTGCAAGGGTC GCATTACGATCCCAGTGGAGAGTGAAGCCCGGCGAATGGAGAAAACACCA GATCCGAGTGAAACACCTGGCAAGAAAGCATCTTCATCAACAAAAAAGAA AAAACCAGCCAAAGCCGCTCCACCCACAGAAGCGATGCTGGATGCGGACC AGAACCAGTTCCTGGAAGATCTGGACGACATGGGTCCGCTGGGCGAGAGC TGGGATGAACTGCTGGATGGGGACTGGGACGCCGCCGCATCCGCAGAAAC AGAAGAGCCAGCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109825:2..364-

>mRNA_M-pyrifera_M_contig109825.2056.1 ID=mRNA_M-pyrifera_M_contig109825.2056.1|Name=mRNA_M-pyrifera_M_contig109825.2056.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig109825:2..364- (Macrocystis pyrifera P11B4 male)
ATGCCGATCAAGTTTTACTGTAAACACTGTGGCCAGAGATTGAGCGTGGC
CAGCAAGAAAGCCGGGAAGAAAGTTGCCTGCCCGGCCTGCAAGGGTCGCA
TTACGATCCCAGTGGAGAGTGAAGCCCGGCGAATGGAGAAAACACCAGAT
CCGAGTGAAACACCTGGCAAGAAAGCATCTTCATCAACAAAAAAGAAAAA
ACCAGCCAAAGCCGCTCCACCCACAGAAGCGATGCTGGATGCGGACCAGA
ACCAGTTCCTGGAAGATCTGGACGACATGGGTCCGCTGGGCGAGAGCTGG
GATGAACTGCTGGATGGGGACTGGGACGCCGCCGCATCCGCAGAAACAGA
AGAGCCAGCGATGCCGATCAAGTTTTACTGTAAACACTGTGGCCAGAGAT
TGAGCGTGGCCAGCAAGAAAGCCGGGAAGAAAGTTGCCTGCCCGGCCTGC
AAGGGTCGCATTACGATCCCAGTGGAGAGTGAAGCCCGGCGAATGGAGAA
AACACCAGATCCGAGTGAAACACCTGGCAAGAAAGCATCTTCATCAACAA
AAAAGAAAAAACCAGCCAAAGCCGCTCCACCCACAGAAGCGATGCTGGAT
GCGGACCAGAACCAGTTCCTGGAAGATCTGGACGACATGGGTCCGCTGGG
CGAGAGCTGGGATGAACTGCTGGATGGGGACTGGGACGCCGCCGCATCCG
CAGAAACAGAAGAGCCAGCG
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