mRNA_M-pyrifera_M_contig109824.2055.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109824.2055.1
Unique NamemRNA_M-pyrifera_M_contig109824.2055.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109824.2055.1 vs. uniprot
Match: UPI000DA6AC56 (helix-turn-helix domain-containing protein n=1 Tax=Hymenobacter sediminis TaxID=2218621 RepID=UPI000DA6AC56)

HSP 1 Score: 67.4 bits (163), Expect = 2.740e-13
Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    1 GQRLKKVRTNAGMSQEELALKAELSQSQIYRIEKGLINTTISTVLHIAETLEVSYSELFEF 183
            GQRL++VR + G +QE LA  AEL  SQI RIE+G+INT++STV  IA TL+V   ELF+F
Sbjct:   14 GQRLRQVRQSKGFTQESLAAAAELEFSQIGRIERGVINTSLSTVFVIARTLQVDVRELFDF 74          
BLAST of mRNA_M-pyrifera_M_contig109824.2055.1 vs. uniprot
Match: UPI0018800398 (XRE family transcriptional regulator n=2 Tax=Flavobacterium sp. KB82 TaxID=2082725 RepID=UPI0018800398)

HSP 1 Score: 67.0 bits (162), Expect = 4.190e-13
Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 1
Query:    7 RLKKVRTNAGMSQEELALKAELSQSQIYRIEKGLINTTISTVLHIAETLEVSYSELFEFK 186
            RLK++R+  G+SQ+ELA ++E+S SQI RIE   IN T+ST+  IA TLEVS SELF+FK
Sbjct:   24 RLKELRSEKGVSQQELANRSEISLSQIARIETVKINPTVSTIFKIARTLEVSPSELFDFK 83          
BLAST of mRNA_M-pyrifera_M_contig109824.2055.1 vs. uniprot
Match: UPI0019524002 (Helix-turn-helix transcriptional regulator n=1 Tax=Flavobacterium macrobrachii TaxID=591204 RepID=UPI0019524002)

HSP 1 Score: 65.1 bits (157), Expect = 1.570e-12
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 1
Query:    1 GQRLKKVRTNAGMSQEELALKAELSQSQIYRIEKGLINTTISTVLHIAETLEVSYSELFEFK 186
            G+ LK++R N  +SQE LA  A++  SQI RIE+G INTTISTV  +AE L++S  ELF+F+
Sbjct:    8 GENLKQIRLNKNLSQEVLAFTADIPISQIGRIERGEINTTISTVKVLAEALDISVKELFDFE 69          
BLAST of mRNA_M-pyrifera_M_contig109824.2055.1 vs. uniprot
Match: A0A7K1G9T6_9FLAO (Helix-turn-helix domain-containing protein n=2 Tax=Flavobacterium TaxID=237 RepID=A0A7K1G9T6_9FLAO)

HSP 1 Score: 65.1 bits (157), Expect = 1.920e-12
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    7 RLKKVRTNAGMSQEELALKAELSQSQIYRIEKGLINTTISTVLHIAETLEVSYSELFEFK 186
            RLK++R+  G+SQEELA ++E++ SQI RIE   IN T+ST+  IA TLEV  SELF F+
Sbjct:   13 RLKEIRSEKGLSQEELAYRSEITLSQIARIETIRINPTVSTIFKIARTLEVPLSELFNFE 72          
BLAST of mRNA_M-pyrifera_M_contig109824.2055.1 vs. uniprot
Match: A0A5Q3QU73_9FLAO (Helix-turn-helix domain-containing protein n=2 Tax=unclassified Flavobacterium TaxID=196869 RepID=A0A5Q3QU73_9FLAO)

HSP 1 Score: 64.7 bits (156), Expect = 3.590e-12
Identity = 35/60 (58.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    7 RLKKVRTNAGMSQEELALKAELSQSQIYRIEKGLINTTISTVLHIAETLEVSYSELFEFK 186
            RLK++R+  G+SQEELA ++EL+ SQI RIE   IN TIST+  IA TLEV   ELF F+
Sbjct:   24 RLKEIRSEKGISQEELAYRSELTLSQIARIETVRINPTISTIFKIARTLEVPLQELFNFE 83          
BLAST of mRNA_M-pyrifera_M_contig109824.2055.1 vs. uniprot
Match: A0A2V4C2P6_9FLAO (XRE family transcriptional regulator n=1 Tax=Flavobacterium hydrophilum TaxID=2211445 RepID=A0A2V4C2P6_9FLAO)

HSP 1 Score: 64.3 bits (155), Expect = 5.100e-12
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    7 RLKKVRTNAGMSQEELALKAELSQSQIYRIEKGLINTTISTVLHIAETLEVSYSELFEFK 186
            RLK++R+  G++QEELA ++E++ SQI RIE   IN T+ST+  IA TLEV  SELF F+
Sbjct:   24 RLKEIRSEKGLTQEELAYRSEITLSQIARIETVRINPTVSTIFKIARTLEVPLSELFNFE 83          
BLAST of mRNA_M-pyrifera_M_contig109824.2055.1 vs. uniprot
Match: UPI000DAE1708 (helix-turn-helix domain-containing protein n=1 Tax=Flavobacterium ginsenosidimutans TaxID=687844 RepID=UPI000DAE1708)

HSP 1 Score: 64.3 bits (155), Expect = 5.100e-12
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    7 RLKKVRTNAGMSQEELALKAELSQSQIYRIEKGLINTTISTVLHIAETLEVSYSELFEFK 186
            RLK+VR    +SQEELAL++EL+ SQI RIE   IN TISTV  IA TL+V  SELF F+
Sbjct:   24 RLKEVRAEKKISQEELALRSELTLSQIARIETVRINPTISTVFKIARTLDVPLSELFNFE 83          
BLAST of mRNA_M-pyrifera_M_contig109824.2055.1 vs. uniprot
Match: UPI001B266CE8 (Helix-turn-helix transcriptional regulator n=1 Tax=Flavobacterium sp. TaxID=239 RepID=UPI001B266CE8)

HSP 1 Score: 63.9 bits (154), Expect = 7.230e-12
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    7 RLKKVRTNAGMSQEELALKAELSQSQIYRIEKGLINTTISTVLHIAETLEVSYSELFEFK 186
            RLK++R+  G+SQEELA ++E++ SQI RIE   IN T+ST+  IA TLE+  SELF F+
Sbjct:   24 RLKEIRSEKGISQEELAYRSEITLSQIARIETVRINPTVSTLFKIARTLEIPLSELFNFE 83          
BLAST of mRNA_M-pyrifera_M_contig109824.2055.1 vs. uniprot
Match: J0RZ75_9FLAO (Helix-turn-helix domain-containing protein n=1 Tax=Flavobacterium sp. F52 TaxID=1202532 RepID=J0RZ75_9FLAO)

HSP 1 Score: 63.5 bits (153), Expect = 1.030e-11
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    7 RLKKVRTNAGMSQEELALKAELSQSQIYRIEKGLINTTISTVLHIAETLEVSYSELFEFK 186
            RLK++R+  G+SQEELA +AE++ SQI RIE   IN T+STV  IA  L++S SE+F F+
Sbjct:   24 RLKEIRSEKGVSQEELAYRAEITLSQIARIETVKINPTVSTVFKIARALDISPSEIFNFE 83          
BLAST of mRNA_M-pyrifera_M_contig109824.2055.1 vs. uniprot
Match: A0A1Y2RGQ8_9BACT (HTH cro/C1-type domain-containing protein n=1 Tax=Chitinophagaceae bacterium IBVUCB2 TaxID=1985174 RepID=A0A1Y2RGQ8_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 1.080e-11
Identity = 32/62 (51.61%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    1 GQRLKKVRTNAGMSQEELALKAELSQSQIYRIEKGLINTTISTVLHIAETLEVSYSELFEFK 186
            G++L+K+R   G+S  + A +A++  SQ+ +IE+G+ NTTISTVL +A+TLEV  SELF FK
Sbjct:   14 GKQLRKLREVKGISMRQFAAEADIEYSQLSKIERGVTNTTISTVLVLAKTLEVEVSELFMFK 75          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109824.2055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000DA6AC562.740e-1359.02helix-turn-helix domain-containing protein n=1 Tax... [more]
UPI00188003984.190e-1360.00XRE family transcriptional regulator n=2 Tax=Flavo... [more]
UPI00195240021.570e-1254.84Helix-turn-helix transcriptional regulator n=1 Tax... [more]
A0A7K1G9T6_9FLAO1.920e-1256.67Helix-turn-helix domain-containing protein n=2 Tax... [more]
A0A5Q3QU73_9FLAO3.590e-1258.33Helix-turn-helix domain-containing protein n=2 Tax... [more]
A0A2V4C2P6_9FLAO5.100e-1255.00XRE family transcriptional regulator n=1 Tax=Flavo... [more]
UPI000DAE17085.100e-1261.67helix-turn-helix domain-containing protein n=1 Tax... [more]
UPI001B266CE87.230e-1255.00Helix-turn-helix transcriptional regulator n=1 Tax... [more]
J0RZ75_9FLAO1.030e-1155.00Helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A1Y2RGQ8_9BACT1.080e-1151.61HTH cro/C1-type domain-containing protein n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109824contigM-pyrifera_M_contig109824:411..602 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score64.3
Seed ortholog evalue2.3e-08
Seed eggNOG ortholog1202532.FF52_12521
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transcriptional regulator
EggNOG OGs4NY63@976,COG1396@1,COG1396@2
COG Functional cat.K
Best tax levelBacteroidetes
Best eggNOG OGNA|NA|NA
Exons1
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.8739552-CDS-M-pyrifera_M_contig109824:410..6021622815608.8739552-CDS-M-pyrifera_M_contig109824:410..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109824 411..602 -
1692277485.612897-CDS-M-pyrifera_M_contig109824:410..6021692277485.612897-CDS-M-pyrifera_M_contig109824:410..602Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109824 411..602 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109824.2055.1prot_M-pyrifera_M_contig109824.2055.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109824 411..602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109824.2055.1

>prot_M-pyrifera_M_contig109824.2055.1 ID=prot_M-pyrifera_M_contig109824.2055.1|Name=mRNA_M-pyrifera_M_contig109824.2055.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp
GQRLKKVRTNAGMSQEELALKAELSQSQIYRIEKGLINTTISTVLHIAET
LEVSYSELFEFKK*
back to top

mRNA from alignment at M-pyrifera_M_contig109824:411..602-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109824.2055.1 ID=mRNA_M-pyrifera_M_contig109824.2055.1|Name=mRNA_M-pyrifera_M_contig109824.2055.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=192bp|location=Sequence derived from alignment at M-pyrifera_M_contig109824:411..602- (Macrocystis pyrifera P11B4 male)
GGTCAAAGGCTCAAAAAAGTCAGAACCAACGCCGGAATGTCTCAGGAAGA GTTGGCTTTAAAAGCAGAGCTTTCACAAAGTCAAATCTACAGAATTGAAA AGGGCTTAATTAACACCACAATATCTACGGTGCTTCACATTGCTGAGACT TTGGAGGTATCTTATTCAGAGTTGTTTGAGTTTAAGAAGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig109824:411..602-

>mRNA_M-pyrifera_M_contig109824.2055.1 ID=mRNA_M-pyrifera_M_contig109824.2055.1|Name=mRNA_M-pyrifera_M_contig109824.2055.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig109824:411..602- (Macrocystis pyrifera P11B4 male)
GGTCAAAGGCTCAAAAAAGTCAGAACCAACGCCGGAATGTCTCAGGAAGA
GTTGGCTTTAAAAGCAGAGCTTTCACAAAGTCAAATCTACAGAATTGAAA
AGGGCTTAATTAACACCACAATATCTACGGTGCTTCACATTGCTGAGACT
TTGGAGGTATCTTATTCAGAGTTGTTTGAGTTTAAGAAGTGAGGTCAAAG
GCTCAAAAAAGTCAGAACCAACGCCGGAATGTCTCAGGAAGAGTTGGCTT
TAAAAGCAGAGCTTTCACAAAGTCAAATCTACAGAATTGAAAAGGGCTTA
ATTAACACCACAATATCTACGGTGCTTCACATTGCTGAGACTTTGGAGGT
ATCTTATTCAGAGTTGTTTGAGTTTAAGAAGTGA
back to top