mRNA_M-pyrifera_M_contig109824.2054.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109824.2054.1
Unique NamemRNA_M-pyrifera_M_contig109824.2054.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109824.2054.1 vs. uniprot
Match: A0A151ESY6_THEAD (Uncharacterized protein n=2 Tax=unclassified Theionarchaea TaxID=1980646 RepID=A0A151ESY6_THEAD)

HSP 1 Score: 133 bits (335), Expect = 1.020e-36
Identity = 70/97 (72.16%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    1 SPPSEDRVYALLSKLEAYAEAKSSFSSGDIFAIVTPHREFTQSALNAMGLQNEQENYFVIALDGGDVHQLERTDDSKEKLDELRDKVRQAEEETRRS 291
            SPPSEDRV+ALL K++AYAEAK SFS GDIFA+VTP+R FTQ A+NAM LQNEQENY VI LDGGD+H  E + D+K++  EL+DKVRQAEEE RRS
Sbjct:  158 SPPSEDRVFALLGKIKAYAEAKKSFSHGDIFAVVTPYR-FTQGAINAMALQNEQENYSVIPLDGGDIHVFESSQDTKDRQRELQDKVRQAEEEARRS 253
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109824.2054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A151ESY6_THEAD1.020e-3672.16Uncharacterized protein n=2 Tax=unclassified Theio... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109824contigM-pyrifera_M_contig109824:3..293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.8395245-CDS-M-pyrifera_M_contig109824:2..2931622815608.8395245-CDS-M-pyrifera_M_contig109824:2..293Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109824 3..293 +
1692277485.6027303-CDS-M-pyrifera_M_contig109824:2..2931692277485.6027303-CDS-M-pyrifera_M_contig109824:2..293Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109824 3..293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109824.2054.1prot_M-pyrifera_M_contig109824.2054.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109824 3..293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109824.2054.1

>prot_M-pyrifera_M_contig109824.2054.1 ID=prot_M-pyrifera_M_contig109824.2054.1|Name=mRNA_M-pyrifera_M_contig109824.2054.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
SPPSEDRVYALLSKLEAYAEAKSSFSSGDIFAIVTPHREFTQSALNAMGL
QNEQENYFVIALDGGDVHQLERTDDSKEKLDELRDKVRQAEEETRRS
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mRNA from alignment at M-pyrifera_M_contig109824:3..293+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109824.2054.1 ID=mRNA_M-pyrifera_M_contig109824.2054.1|Name=mRNA_M-pyrifera_M_contig109824.2054.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=291bp|location=Sequence derived from alignment at M-pyrifera_M_contig109824:3..293+ (Macrocystis pyrifera P11B4 male)
AGTCCTCCCAGTGAGGATAGAGTTTATGCTCTTTTAAGTAAATTAGAAGC
TTATGCTGAAGCGAAGAGCTCTTTTTCTTCTGGAGATATTTTTGCAATAG
TTACTCCTCATCGAGAGTTTACACAGAGTGCCTTGAATGCAATGGGGTTG
CAAAATGAACAAGAAAACTACTTTGTTATTGCATTAGACGGAGGTGATGT
ACATCAGTTAGAAAGAACTGACGATAGCAAAGAAAAGCTCGACGAATTAA
GAGACAAAGTGAGACAGGCGGAAGAAGAAACTAGAAGAAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109824:3..293+

>mRNA_M-pyrifera_M_contig109824.2054.1 ID=mRNA_M-pyrifera_M_contig109824.2054.1|Name=mRNA_M-pyrifera_M_contig109824.2054.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig109824:3..293+ (Macrocystis pyrifera P11B4 male)
AGTCCTCCCAGTGAGGATAGAGTTTATGCTCTTTTAAGTAAATTAGAAGC
TTATGCTGAAGCGAAGAGCTCTTTTTCTTCTGGAGATATTTTTGCAATAG
TTACTCCTCATCGAGAGTTTACACAGAGTGCCTTGAATGCAATGGGGTTG
CAAAATGAACAAGAAAACTACTTTGTTATTGCATTAGACGGAGGTGATGT
ACATCAGTTAGAAAGAACTGACGATAGCAAAGAAAAGCTCGACGAATTAA
GAGACAAAGTGAGACAGGCGGAAGAAGAAACTAGAAGAAGCAGTCCTCCC
AGTGAGGATAGAGTTTATGCTCTTTTAAGTAAATTAGAAGCTTATGCTGA
AGCGAAGAGCTCTTTTTCTTCTGGAGATATTTTTGCAATAGTTACTCCTC
ATCGAGAGTTTACACAGAGTGCCTTGAATGCAATGGGGTTGCAAAATGAA
CAAGAAAACTACTTTGTTATTGCATTAGACGGAGGTGATGTACATCAGTT
AGAAAGAACTGACGATAGCAAAGAAAAGCTCGACGAATTAAGAGACAAAG
TGAGACAGGCGGAAGAAGAAACTAGAAGAAGC
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