mRNA_M-pyrifera_M_contig109816.2050.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109816.2050.1
Unique NamemRNA_M-pyrifera_M_contig109816.2050.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109816.2050.1 vs. uniprot
Match: A0A7S2MNF8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MNF8_9STRA)

HSP 1 Score: 128 bits (321), Expect = 3.660e-35
Identity = 60/128 (46.88%), Postives = 85/128 (66.41%), Query Frame = 1 
Query:    1 LDHTADVQIHAWGDSVGEAYAQTALGLMGYITDPSSVSVDPSCDTVVEAKGHDPLSLLFHFLDEVLFTFASDDMVARECIVEHPGAAGASMAMDTCQIRVRLRGEKFNLAKHPQGTEIKAITFSNMQV 384
            LDHTADVQ+HAWG S+ EA+   A  +  Y++D  ++ VDP+        GHD  SLL+ FLDE+LF FA++D + R   +E       +M     ++++RL GEK +L++HPQGTE+KAITFSNMQ+
Sbjct:   32 LDHTADVQLHAWGSSIEEAFEHMAASMFHYMSDIRTIRVDPTMTMKATVSGHDKTSLLYRFLDELLFQFATEDFICRHVFIEWMKQGDDNM----WRLQMRLEGEKLDLSRHPQGTEVKAITFSNMQI 155
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BLAST of mRNA_M-pyrifera_M_contig109816.2050.1 vs. uniprot
Match: A0A670Y4C0_PSETE (Protein archease n=4 Tax=Colubroidea TaxID=34989 RepID=A0A670Y4C0_PSETE)

HSP 1 Score: 125 bits (315), Expect = 2.490e-34
Identity = 68/131 (51.91%), Postives = 91/131 (69.47%), Query Frame = 1 
Query:    1 LDHTADVQIHAWGDSVGEAYAQTALGLMGYITDPSSVSVDPSCDTVVEAKGHDPLSLLFHFLDEVLFTFASDDM-VARECIVEHPGAAGASMAMDTCQIRVRLRG--EKFNLAKHPQGTEIKAITFSNMQV 384
            LDHTADVQ+HAWGDS+ EA+ Q A+ + GY+TD  +V  +P     V+A+GHD LSLLFHFLDE L+ F++++  +ARE  V H         MD  + ++R  G  E+F+L KHPQGTE+KAIT+S MQV
Sbjct:   31 LDHTADVQLHAWGDSLEEAFEQCAMAMFGYMTDTETV--EPVDTVEVKAEGHDMLSLLFHFLDEWLYKFSAEEFFIAREVKVVH---------MDRIRFKIRSIGWGEEFSLQKHPQGTEVKAITYSAMQV 150
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BLAST of mRNA_M-pyrifera_M_contig109816.2050.1 vs. uniprot
Match: U3FZR9_MICFL (Protein archease n=5 Tax=Elapinae TaxID=42168 RepID=U3FZR9_MICFL)

HSP 1 Score: 125 bits (313), Expect = 5.010e-34
Identity = 68/131 (51.91%), Postives = 90/131 (68.70%), Query Frame = 1 
Query:    1 LDHTADVQIHAWGDSVGEAYAQTALGLMGYITDPSSVSVDPSCDTVVEAKGHDPLSLLFHFLDEVLFTFASDDM-VARECIVEHPGAAGASMAMDTCQIRVRLRG--EKFNLAKHPQGTEIKAITFSNMQV 384
            LDHTADVQ+HAWGDS+ EA+ Q A+ + GY+TD  +V  +P     VEA+GHD LSLLFHFLDE L+ F++++  + RE  V H         +D  + R+R  G  E+F+L KHPQGTE+KAIT+S MQV
Sbjct:   31 LDHTADVQLHAWGDSLEEAFEQCAMAMFGYMTDTETV--EPLDTVEVEAEGHDMLSLLFHFLDEWLYKFSAEEFFIPREVKVVH---------IDRIRFRIRSIGWGEEFSLQKHPQGTEVKAITYSAMQV 150
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BLAST of mRNA_M-pyrifera_M_contig109816.2050.1 vs. uniprot
Match: A0A2P8YVB5_BLAGE (Archease-like protein n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8YVB5_BLAGE)

HSP 1 Score: 125 bits (314), Expect = 6.230e-34
Identity = 67/131 (51.15%), Postives = 87/131 (66.41%), Query Frame = 1 
Query:    1 LDHTADVQIHAWGDSVGEAYAQTALGLMGYITDPSSVSVDPSCDTVVEAKGHDPLSLLFHFLDEVLFTFASDD-MVARECIVEHPGAAGASMAMDTCQIRVRLR--GEKFNLAKHPQGTEIKAITFSNMQV 384
            LDHTADVQ+HAWGD++ EA+ Q A  + GY+T+  +V +   C    EA+GHD LSLLFHFLDE LF F +D   +AR+ I+E           D    R++ R  GE+F + KHPQGTE+KAIT+SNMQV
Sbjct:   50 LDHTADVQLHAWGDTLKEAFEQCATSMYGYMTEIDTVEIK-ECQEF-EAEGHDMLSLLFHFLDECLFLFCADPYFIARKVIIEE---------FDKTNFRIKARAFGEEFEIGKHPQGTEVKAITYSNMQV 169
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BLAST of mRNA_M-pyrifera_M_contig109816.2050.1 vs. uniprot
Match: U3JCW6_FICAL (Protein archease n=96 Tax=Passeriformes TaxID=9126 RepID=U3JCW6_FICAL)

HSP 1 Score: 124 bits (311), Expect = 1.010e-33
Identity = 67/131 (51.15%), Postives = 90/131 (68.70%), Query Frame = 1 
Query:    1 LDHTADVQIHAWGDSVGEAYAQTALGLMGYITDPSSVSVDPSCDTVVEAKGHDPLSLLFHFLDEVLFTFASDDM-VARECIVEHPGAAGASMAMDTCQIRVRLRG--EKFNLAKHPQGTEIKAITFSNMQV 384
            LDHTADVQ+HAWGD++ EA+ Q A+ + GY+TD  +V  +P     VEA+GHD LSLLFHFLDE L+ F++D+  + RE  V H         +D  Q ++R  G  E+F+L KHPQGTE+KAIT+S MQ+
Sbjct:   31 LDHTADVQLHAWGDTLEEAFEQCAMAMFGYMTDTGTV--EPVDTVEVEAEGHDLLSLLFHFLDEWLYKFSADEFFIPREVKVLH---------IDRMQFKIRSIGWGEEFSLDKHPQGTEVKAITYSAMQI 150
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BLAST of mRNA_M-pyrifera_M_contig109816.2050.1 vs. uniprot
Match: A0A7L2TPD9_POMRU (Protein archease (Fragment) n=4 Tax=Passeriformes TaxID=9126 RepID=A0A7L2TPD9_POMRU)

HSP 1 Score: 122 bits (307), Expect = 1.700e-33
Identity = 66/131 (50.38%), Postives = 90/131 (68.70%), Query Frame = 1 
Query:    1 LDHTADVQIHAWGDSVGEAYAQTALGLMGYITDPSSVSVDPSCDTVVEAKGHDPLSLLFHFLDEVLFTFASDDM-VARECIVEHPGAAGASMAMDTCQIRVRLRG--EKFNLAKHPQGTEIKAITFSNMQV 384
            LDHTADVQ+HAWGD++ EA+ Q A+ + GY+TD  +V  +P     VEA+GHD LSLLFHFLDE L+ F++D+  + RE  V H         +D  + ++R  G  E+F+L KHPQGTE+KAIT+S MQ+
Sbjct:    1 LDHTADVQLHAWGDTLEEAFEQCAMAMFGYMTDTGTV--EPVDTLEVEAEGHDMLSLLFHFLDEWLYKFSADEFFIPREVKVLH---------IDRMRFKIRSIGWGEEFSLDKHPQGTEVKAITYSAMQI 120
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BLAST of mRNA_M-pyrifera_M_contig109816.2050.1 vs. uniprot
Match: A0A6I9YJS6_9SAUR (Protein archease n=3 Tax=Serpentes TaxID=8570 RepID=A0A6I9YJS6_9SAUR)

HSP 1 Score: 123 bits (308), Expect = 2.780e-33
Identity = 67/131 (51.15%), Postives = 89/131 (67.94%), Query Frame = 1 
Query:    1 LDHTADVQIHAWGDSVGEAYAQTALGLMGYITDPSSVSVDPSCDTVVEAKGHDPLSLLFHFLDEVLFTFASDDM-VARECIVEHPGAAGASMAMDTCQIRVRLRG--EKFNLAKHPQGTEIKAITFSNMQV 384
            LDHTADVQ+HAWGD++ EA+ Q A+ + GY+TD  +V  +P     VEA+GHD LSLLFHFLDE L+ F++++  + RE  V H         +D    R+R  G  E+F+L KHPQGTE+KAIT+S MQV
Sbjct:   31 LDHTADVQLHAWGDTLEEAFEQCAMAMFGYMTDTETV--EPLDTVEVEAEGHDMLSLLFHFLDEWLYKFSAEEFFIPREVKVLH---------IDPIHFRIRSIGWGEEFSLQKHPQGTEVKAITYSAMQV 150
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BLAST of mRNA_M-pyrifera_M_contig109816.2050.1 vs. uniprot
Match: A0A7K5PEU8_9CORV (Protein archease (Fragment) n=2 Tax=Passeriformes TaxID=9126 RepID=A0A7K5PEU8_9CORV)

HSP 1 Score: 123 bits (308), Expect = 2.860e-33
Identity = 66/131 (50.38%), Postives = 89/131 (67.94%), Query Frame = 1 
Query:    1 LDHTADVQIHAWGDSVGEAYAQTALGLMGYITDPSSVSVDPSCDTVVEAKGHDPLSLLFHFLDEVLFTFASDDM-VARECIVEHPGAAGASMAMDTCQIRVRLRG--EKFNLAKHPQGTEIKAITFSNMQV 384
            LDHTADVQ+HAWGD++ EA+ Q A+ + GY+TD  +V  +P     V+A+GHD LSLLFHFLDE L+ F++D   + RE  V H         +D  Q ++R  G  E+F+L KHPQGTE+KAIT+S MQ+
Sbjct:   31 LDHTADVQLHAWGDTLEEAFEQCAMAMFGYMTDTGTV--EPVDTVEVQAEGHDLLSLLFHFLDEWLYKFSADQFFIPREVKVLH---------IDRMQFKIRSIGWGEEFSLGKHPQGTEVKAITYSAMQI 150
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BLAST of mRNA_M-pyrifera_M_contig109816.2050.1 vs. uniprot
Match: A0A7R9PP27_TIMGE (Hypothetical protein n=3 Tax=Timema TaxID=61471 RepID=A0A7R9PP27_TIMGE)

HSP 1 Score: 122 bits (307), Expect = 2.960e-33
Identity = 66/131 (50.38%), Postives = 89/131 (67.94%), Query Frame = 1 
Query:    1 LDHTADVQIHAWGDSVGEAYAQTALGLMGYITDPSSVSVDPSCDTVVEAKGHDPLSLLFHFLDEVLFTFASDDM-VARECIVEHPGAAGASMAMDTCQIRVRLRG--EKFNLAKHPQGTEIKAITFSNMQV 384
            LDHTADVQIHAWGDS+ EA+ Q+A+ +  Y+T+   V +  S D  +EA+GHD LSLLFHFLDE LF F ++   +AR+  +         +  D   +R++ RG  E+F + KHPQGTE+KAIT+SNMQV
Sbjct:   19 LDHTADVQIHAWGDSLEEAFEQSAMAMFAYMTEIEYVQMTESQD--IEAEGHDILSLLFHFLDEFLFLFCAEPFFIARKVKI---------LEFDRENLRIKARGYGEEFVIGKHPQGTEVKAITYSNMQV 138
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BLAST of mRNA_M-pyrifera_M_contig109816.2050.1 vs. uniprot
Match: UPI0008F9AE0A (protein archease-like n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9AE0A)

HSP 1 Score: 122 bits (307), Expect = 2.960e-33
Identity = 64/131 (48.85%), Postives = 89/131 (67.94%), Query Frame = 1 
Query:    1 LDHTADVQIHAWGDSVGEAYAQTALGLMGYITDPSSVSVDPSCDTVVEAKGHDPLSLLFHFLDEVLFTFASD-DMVARECIVEHPGAAGASMAMDTCQIRVRLR--GEKFNLAKHPQGTEIKAITFSNMQV 384
            LDHTADVQ+HAWGD++ EA+ Q A  + GY+T+   V +  + D  +EA+GHD LSLLFHFLDE+LF F ++ +++AR+  V         +  D    +++ R  GE F + KHPQGTE+KAIT+SNMQV
Sbjct:   19 LDHTADVQLHAWGDTLEEAFEQVATAMFGYMTELEYVEMKEAHD--IEAEGHDMLSLLFHFLDELLFLFCAEPNIIARKVKV---------LEFDKTDFKIKARAFGEPFEIGKHPQGTEVKAITYSNMQV 138
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109816.2050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2MNF8_9STRA3.660e-3546.88Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A670Y4C0_PSETE2.490e-3451.91Protein archease n=4 Tax=Colubroidea TaxID=34989 R... [more]
U3FZR9_MICFL5.010e-3451.91Protein archease n=5 Tax=Elapinae TaxID=42168 RepI... [more]
A0A2P8YVB5_BLAGE6.230e-3451.15Archease-like protein n=1 Tax=Blattella germanica ... [more]
U3JCW6_FICAL1.010e-3351.15Protein archease n=96 Tax=Passeriformes TaxID=9126... [more]
A0A7L2TPD9_POMRU1.700e-3350.38Protein archease (Fragment) n=4 Tax=Passeriformes ... [more]
A0A6I9YJS6_9SAUR2.780e-3351.15Protein archease n=3 Tax=Serpentes TaxID=8570 RepI... [more]
A0A7K5PEU8_9CORV2.860e-3350.38Protein archease (Fragment) n=2 Tax=Passeriformes ... [more]
A0A7R9PP27_TIMGE2.960e-3350.38Hypothetical protein n=3 Tax=Timema TaxID=61471 Re... [more]
UPI0008F9AE0A2.960e-3348.85protein archease-like n=1 Tax=Bemisia tabaci TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109816contigM-pyrifera_M_contig109816:22..586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
GOsGO:0000394,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006388,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0007275,GO:0007399,GO:0008033,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0010720,GO:0010975,GO:0010976,GO:0016070,GO:0022008,GO:0030154,GO:0031344,GO:0031346,GO:0031974,GO:0031981,GO:0032101,GO:0032103,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048679,GO:0048680,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0060284,GO:0065007,GO:0070013,GO:0070570,GO:0070572,GO:0071704,GO:0072669,GO:0080134,GO:0080135,GO:0090304,GO:0120035,GO:1901360,GO:1903034,GO:1903036,GO:2000026
EggNOG free text desc.Zinc finger and BTB domain containing 8 opposite strand
EggNOG OGs39U2I@33154,3BD8T@33208,3CWE8@33213,482Z7@7711,497QJ@7742,4GMGF@8782,COG1371@1,KOG4528@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_002510.1
COG Functional cat.S
Best tax levelAves
Best eggNOG OGNA|NA|NA
Exons3
Model size384
Cds size384
Taxonomic scopeMetazoa
Seed ortholog score125.9
Seed ortholog evalue1.3e-26
Seed eggNOG ortholog181119.XP_005529806.1
Preferred nameZBTB8OS
Hectar predicted targeting categoryother localisation
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109816.2050.1prot_M-pyrifera_M_contig109816.2050.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109816 22..586 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.5917468-CDS-M-pyrifera_M_contig109816:21..551622815608.5917468-CDS-M-pyrifera_M_contig109816:21..55Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109816 22..55 +
1692277485.5134008-CDS-M-pyrifera_M_contig109816:21..551692277485.5134008-CDS-M-pyrifera_M_contig109816:21..55Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109816 22..55 +
1622815608.606681-CDS-M-pyrifera_M_contig109816:173..3881622815608.606681-CDS-M-pyrifera_M_contig109816:173..388Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109816 174..388 +
1692277485.5250952-CDS-M-pyrifera_M_contig109816:173..3881692277485.5250952-CDS-M-pyrifera_M_contig109816:173..388Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109816 174..388 +
1622815608.6245482-CDS-M-pyrifera_M_contig109816:451..5861622815608.6245482-CDS-M-pyrifera_M_contig109816:451..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109816 452..586 +
1692277485.534777-CDS-M-pyrifera_M_contig109816:451..5861692277485.534777-CDS-M-pyrifera_M_contig109816:451..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109816 452..586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109816.2050.1

>prot_M-pyrifera_M_contig109816.2050.1 ID=prot_M-pyrifera_M_contig109816.2050.1|Name=mRNA_M-pyrifera_M_contig109816.2050.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
LDHTADVQIHAWGDSVGEAYAQTALGLMGYITDPSSVSVDPSCDTVVEAK
GHDPLSLLFHFLDEVLFTFASDDMVARECIVEHPGAAGASMAMDTCQIRV
RLRGEKFNLAKHPQGTEIKAITFSNMQV
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mRNA from alignment at M-pyrifera_M_contig109816:22..586+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109816.2050.1 ID=mRNA_M-pyrifera_M_contig109816.2050.1|Name=mRNA_M-pyrifera_M_contig109816.2050.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=565bp|location=Sequence derived from alignment at M-pyrifera_M_contig109816:22..586+ (Macrocystis pyrifera P11B4 male)
TTGGATCATACTGCTGATGTCCAAATTCATGCATGTAAGTTGTGGCTGCA
GTGTATTGTGGGGGTTGTAGAGTGATTGTTTGGTATTCCATCTTTTCTTT
TTTGGCTGATATTTTTTCATTGCCAATTATTTTTCTCCTCTCTCTTTGTC
AGGGGGTGATAGTGTTGGAGAAGCATATGCTCAGACTGCATTGGGATTGA
TGGGGTATATCACAGATCCTTCATCTGTATCTGTAGACCCATCTTGTGAC
ACTGTGGTTGAAGCGAAAGGTCATGATCCTTTGTCGTTGCTGTTTCACTT
TTTGGACGAGGTGCTGTTCACTTTTGCTTCTGATGATATGGTAGCACGTG
AGTGCATCGTGGAACATGTCGTATTTCCAGAGTTGAAGGGAGCAGGAACA
GCAGGAGATGGAGCACGGAAACCAGCCAAGCCTGGAGCTGCAGGAGCATC
CATGGCTATGGACACTTGTCAAATTCGAGTGAGATTGAGAGGGGAGAAAT
TCAATCTTGCGAAACATCCTCAAGGTACGGAAATCAAGGCCATTACTTTC
TCCAACATGCAAGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109816:22..586+

>mRNA_M-pyrifera_M_contig109816.2050.1 ID=mRNA_M-pyrifera_M_contig109816.2050.1|Name=mRNA_M-pyrifera_M_contig109816.2050.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig109816:22..586+ (Macrocystis pyrifera P11B4 male)
TTGGATCATACTGCTGATGTCCAAATTCATGCATTTGGATCATACTGCTG
ATGTCCAAATTCATGCATGGGGTGATAGTGTTGGAGAAGCATATGCTCAG
ACTGCATTGGGATTGATGGGGTATATCACAGATCCTTCATCTGTATCTGT
AGACCCATCTTGTGACACTGTGGTTGAAGCGAAAGGTCATGATCCTTTGT
CGTTGCTGTTTCACTTTTTGGACGAGGTGCTGTTCACTTTTGCTTCTGAT
GATATGGTAGCACGTGAGTGCATCGTGGAACATGGGGTGATAGTGTTGGA
GAAGCATATGCTCAGACTGCATTGGGATTGATGGGGTATATCACAGATCC
TTCATCTGTATCTGTAGACCCATCTTGTGACACTGTGGTTGAAGCGAAAG
GTCATGATCCTTTGTCGTTGCTGTTTCACTTTTTGGACGAGGTGCTGTTC
ACTTTTGCTTCTGATGATATGGTAGCACGTGAGTGCATCGTGGAACATCC
TGGAGCTGCAGGAGCATCCATGGCTATGGACACTTGTCAAATTCGAGTGA
GATTGAGAGGGGAGAAATTCAATCTTGCGAAACATCCTCAAGGTACGGAA
ATCAAGGCCATTACTTTCTCCAACATGCAAGTACCTGGAGCTGCAGGAGC
ATCCATGGCTATGGACACTTGTCAAATTCGAGTGAGATTGAGAGGGGAGA
AATTCAATCTTGCGAAACATCCTCAAGGTACGGAAATCAAGGCCATTACT
TTCTCCAACATGCAAGTA
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