prot_M-pyrifera_M_contig109812.2048.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig109812.2048.1
Unique Nameprot_M-pyrifera_M_contig109812.2048.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length95
Homology
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BLAST of mRNA_M-pyrifera_M_contig109812.2048.1 vs. uniprot
Match: A0A0D2X5H7_CAPO3 (RRM domain-containing protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X5H7_CAPO3)

HSP 1 Score: 50.4 bits (119), Expect = 4.590e-5
Identity = 34/94 (36.17%), Postives = 50/94 (53.19%), Query Frame = 0 
Query:    1 LAVGGLETEEDVRAVADRVCKLAKREQLFLDILRDDDTGEYRGFAYLSLSDGDLDELLAALKQLNGATWRGRTMHIGLAREDYLAKLRREHEEA 94
            L VGGL  E     V +R       + +   ++RD +TGE RGFAYL + D   + L   +     A W+G+ + + LA+E  L +L+RE EEA
Sbjct:   57 LYVGGLPLEVSEHDVQERFKSFGAVKAV--QLIRDHETGESRGFAYLDV-DYTENSLKKCMSVYANARWKGKLVRVQLAKESVLVRLQREREEA 147
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109812.2048.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0D2X5H7_CAPO34.590e-536.17RRM domain-containing protein n=1 Tax=Capsaspora o... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..94
e-value: 7.8E-8
score: 34.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 1..81
score: 8.893
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 29..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109812contigM-pyrifera_M_contig109812:318..602 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109812.2048.1mRNA_M-pyrifera_M_contig109812.2048.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig109812 318..602 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig109812.2048.1 ID=prot_M-pyrifera_M_contig109812.2048.1|Name=mRNA_M-pyrifera_M_contig109812.2048.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=95bp
LAVGGLETEEDVRAVADRVCKLAKREQLFLDILRDDDTGEYRGFAYLSLS
DGDLDELLAALKQLNGATWRGRTMHIGLAREDYLAKLRREHEEAL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR035979RBD_domain_sf