mRNA_M-pyrifera_M_contig88120.20469.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88120.20469.1
Unique NamemRNA_M-pyrifera_M_contig88120.20469.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig88120.20469.1 vs. uniprot
Match: A0A087SST8_AUXPR (Villin-1 n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SST8_AUXPR)

HSP 1 Score: 55.5 bits (132), Expect = 1.150e-7
Identity = 28/68 (41.18%), Postives = 44/68 (64.71%), Query Frame = 1
Query:   10 RTMARVQPGDATYTLEELQAATPDSGTLEIDFSKKEEYLSEADFVEHFGCTVEEFRALPAWKKHVQRK 213
            R    + PG+  + +EEL+    +SG   I+ ++KE+YLS ADF + FG T EEF+A PAW++ + +K
Sbjct:  110 RIAVTLAPGEQVFPVEELKGLRAESG---INMTRKEDYLSPADFEKVFGKTREEFKAQPAWRQTLAKK 174          
BLAST of mRNA_M-pyrifera_M_contig88120.20469.1 vs. uniprot
Match: A0A1D2A176_AUXPR (HP domain-containing protein n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A176_AUXPR)

HSP 1 Score: 55.5 bits (132), Expect = 3.170e-7
Identity = 28/68 (41.18%), Postives = 44/68 (64.71%), Query Frame = 1
Query:   10 RTMARVQPGDATYTLEELQAATPDSGTLEIDFSKKEEYLSEADFVEHFGCTVEEFRALPAWKKHVQRK 213
            R    + PG+  + +EEL+    +SG   I+ ++KE+YLS ADF + FG T EEF+A PAW++ + +K
Sbjct:  383 RIAVTLAPGEQVFPVEELKGLRAESG---INMTRKEDYLSPADFEKVFGKTREEFKAQPAWRQTLAKK 447          
BLAST of mRNA_M-pyrifera_M_contig88120.20469.1 vs. uniprot
Match: A0A7S2D1R4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D1R4_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.530e-6
Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 1
Query:   28 QPGDATYTLEELQAATPDSGTLEIDFSKKEEYLSEADFVEHFGCTVEEFRALPAWKK 198
            +P    ++L ELQA TP+     +D +KKEEYLS+ADF+E F   +  ++ALP WK+
Sbjct:  474 KPTSEKFSLAELQAGTPEG----VDPTKKEEYLSDADFLEAFKVDMAAYKALPGWKQ 526          
BLAST of mRNA_M-pyrifera_M_contig88120.20469.1 vs. uniprot
Match: A0A2P6TXB8_CHLSO (Autotransporter-associated beta strand repeat n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TXB8_CHLSO)

HSP 1 Score: 52.0 bits (123), Expect = 5.340e-6
Identity = 26/64 (40.62%), Postives = 41/64 (64.06%), Query Frame = 1
Query:   22 RVQPGDATYTLEELQAATPDSGTLEIDFSKKEEYLSEADFVEHFGCTVEEFRALPAWKKHVQRK 213
            +++PG+ T+  + L+    DSG   ID +KKE YLS+ADF + FG    E+ A PAW++ + +K
Sbjct:  453 KIKPGEQTFDYDTLKGMRGDSG---IDMTKKEAYLSDADFEKVFGKPRGEWAAQPAWRQQMAKK 513          
BLAST of mRNA_M-pyrifera_M_contig88120.20469.1 vs. uniprot
Match: A0A1L8HI80_XENLA (advillin n=4 Tax=Xenopus TaxID=8353 RepID=A0A1L8HI80_XENLA)

HSP 1 Score: 52.0 bits (123), Expect = 5.430e-6
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 1
Query:   43 TYTLEELQAATPDSGTLEIDFSKKEEYLSEADFVEHFGCTVEEFRALPAWKK 198
            TY LE L+          +DF+KKE YL++ DFV  FG T EEF ALP+WK+
Sbjct:  758 TYPLEFLKGKQKPELPEGVDFTKKENYLTDQDFVAAFGITREEFYALPSWKQ 809          
BLAST of mRNA_M-pyrifera_M_contig88120.20469.1 vs. uniprot
Match: A0A6A4YQH9_9STRA (HP domain-containing protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4YQH9_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 5.840e-6
Identity = 27/56 (48.21%), Postives = 34/56 (60.71%), Query Frame = 1
Query:   46 YTLEELQAATPDSGTLEIDFSKKEEYLSEADFVEHFGCTVEEFRALPAWKKHVQRK 213
            YT E+L A     G   ID S+KE YLS+ADF   FG T  EF A+P WK+  ++K
Sbjct:    6 YTHEQLVA-----GVEGIDLSRKESYLSDADFKTVFGQTRAEFDAMPKWKQQAKKK 56          
BLAST of mRNA_M-pyrifera_M_contig88120.20469.1 vs. uniprot
Match: A0A2P5DHH4_PARAD (Villin n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5DHH4_PARAD)

HSP 1 Score: 50.8 bits (120), Expect = 1.290e-5
Identity = 27/64 (42.19%), Postives = 38/64 (59.38%), Query Frame = 1
Query:   19 ARVQPGDATYTLEELQAATPDSGTLEIDFSKKEEYLSEADFVEHFGCTVEEFRALPAWKKHVQR 210
            A  + G + Y  E L+  + D   +EID +K+E YLS A+F E FG T E F  LP WK++ Q+
Sbjct:  245 AEDEEGLSIYPYERLKTTSADP-VIEIDVTKRETYLSSAEFREKFGMTKEAFYKLPKWKQNKQK 307          
BLAST of mRNA_M-pyrifera_M_contig88120.20469.1 vs. uniprot
Match: A0A397ACW6_9STRA (HP domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ACW6_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 1.880e-5
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   16 MARVQPGDATYTLEELQAATPDSGTLEIDFSKKEEYLSEADFVEHFGCTVEEFRALPAWKKHVQRK 213
            +A V  G+ T+TL++L A     G   ID ++KE YLS+A+F    G T  EF ALP WK+  ++K
Sbjct:  516 VAAVAGGNQTFTLQQLIA-----GVDGIDLTRKESYLSDAEFKTVLGVTRGEFAALPKWKQQAKKK 576          
BLAST of mRNA_M-pyrifera_M_contig88120.20469.1 vs. uniprot
Match: A0A8C8VNK9_9SAUR (Advillin n=2 Tax=Pelusios castaneus TaxID=367368 RepID=A0A8C8VNK9_9SAUR)

HSP 1 Score: 50.4 bits (119), Expect = 1.900e-5
Identity = 28/52 (53.85%), Postives = 34/52 (65.38%), Query Frame = 1
Query:   43 TYTLEELQAATPDSGTLEIDFSKKEEYLSEADFVEHFGCTVEEFRALPAWKK 198
            TY LE L     D    ++D +KKE+YLSE+DFV  FG   EEF ALP+WKK
Sbjct:  771 TYPLEVL-TNPKDELPEDVDPAKKEDYLSESDFVAVFGMRREEFAALPSWKK 821          
BLAST of mRNA_M-pyrifera_M_contig88120.20469.1 vs. uniprot
Match: UPI0004628123 (advillin n=1 Tax=Anolis carolinensis TaxID=28377 RepID=UPI0004628123)

HSP 1 Score: 49.7 bits (117), Expect = 3.560e-5
Identity = 27/52 (51.92%), Postives = 34/52 (65.38%), Query Frame = 1
Query:   43 TYTLEELQAATPDSGTLEIDFSKKEEYLSEADFVEHFGCTVEEFRALPAWKK 198
            TY LE L A+  D    ++D +KKE +LSE DFV  FG  +EEF ALP WK+
Sbjct:  765 TYPLEVLLASR-DELPEDVDPAKKENFLSEDDFVRVFGIPMEEFNALPTWKQ 815          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88120.20469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A087SST8_AUXPR1.150e-741.18Villin-1 n=1 Tax=Auxenochlorella protothecoides Ta... [more]
A0A1D2A176_AUXPR3.170e-741.18HP domain-containing protein n=3 Tax=Auxenochlorel... [more]
A0A7S2D1R4_9STRA1.530e-645.61Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A2P6TXB8_CHLSO5.340e-640.63Autotransporter-associated beta strand repeat n=1 ... [more]
A0A1L8HI80_XENLA5.430e-650.00advillin n=4 Tax=Xenopus TaxID=8353 RepID=A0A1L8HI... [more]
A0A6A4YQH9_9STRA5.840e-648.21HP domain-containing protein (Fragment) n=1 Tax=Ap... [more]
A0A2P5DHH4_PARAD1.290e-542.19Villin n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5... [more]
A0A397ACW6_9STRA1.880e-542.42HP domain-containing protein (Fragment) n=1 Tax=Ap... [more]
A0A8C8VNK9_9SAUR1.900e-553.85Advillin n=2 Tax=Pelusios castaneus TaxID=367368 R... [more]
UPI00046281233.560e-551.92advillin n=1 Tax=Anolis carolinensis TaxID=28377 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88120contigM-pyrifera_M_contig88120:5..220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816790.756476-CDS-M-pyrifera_M_contig88120:4..2201622816790.756476-CDS-M-pyrifera_M_contig88120:4..220Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88120 5..220 +
1692278180.2084715-CDS-M-pyrifera_M_contig88120:4..2201692278180.2084715-CDS-M-pyrifera_M_contig88120:4..220Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88120 5..220 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88120.20469.1prot_M-pyrifera_M_contig88120.20469.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88120 5..220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88120.20469.1

>prot_M-pyrifera_M_contig88120.20469.1 ID=prot_M-pyrifera_M_contig88120.20469.1|Name=mRNA_M-pyrifera_M_contig88120.20469.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
MSERTMARVQPGDATYTLEELQAATPDSGTLEIDFSKKEEYLSEADFVEH
FGCTVEEFRALPAWKKHVQRKK
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mRNA from alignment at M-pyrifera_M_contig88120:5..220+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88120.20469.1 ID=mRNA_M-pyrifera_M_contig88120.20469.1|Name=mRNA_M-pyrifera_M_contig88120.20469.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig88120:5..220+ (Macrocystis pyrifera P11B4 male)
ATGAGTGAACGAACCATGGCTCGTGTGCAACCAGGTGATGCAACATACAC CCTGGAAGAATTGCAAGCTGCTACACCAGATTCTGGAACTTTGGAGATTG ATTTCAGCAAGAAGGAAGAGTATCTCAGTGAAGCAGACTTTGTCGAACAC TTTGGATGCACTGTGGAAGAATTCCGTGCTCTTCCAGCATGGAAGAAACA CGTGCAAAGAAAGAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88120:5..220+

>mRNA_M-pyrifera_M_contig88120.20469.1 ID=mRNA_M-pyrifera_M_contig88120.20469.1|Name=mRNA_M-pyrifera_M_contig88120.20469.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig88120:5..220+ (Macrocystis pyrifera P11B4 male)
ATGAGTGAACGAACCATGGCTCGTGTGCAACCAGGTGATGCAACATACAC
CCTGGAAGAATTGCAAGCTGCTACACCAGATTCTGGAACTTTGGAGATTG
ATTTCAGCAAGAAGGAAGAGTATCTCAGTGAAGCAGACTTTGTCGAACAC
TTTGGATGCACTGTGGAAGAATTCCGTGCTCTTCCAGCATGGAAGAAACA
CGTGCAAAGAAAGAAAATGAGTGAACGAACCATGGCTCGTGTGCAACCAG
GTGATGCAACATACACCCTGGAAGAATTGCAAGCTGCTACACCAGATTCT
GGAACTTTGGAGATTGATTTCAGCAAGAAGGAAGAGTATCTCAGTGAAGC
AGACTTTGTCGAACACTTTGGATGCACTGTGGAAGAATTCCGTGCTCTTC
CAGCATGGAAGAAACACGTGCAAAGAAAGAAA
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