mRNA_M-pyrifera_M_contig88052.20461.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88052.20461.1
Unique NamemRNA_M-pyrifera_M_contig88052.20461.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig88052.20461.1 vs. uniprot
Match: A0A2E7KF59_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KF59_9PLAN)

HSP 1 Score: 211 bits (537), Expect = 2.740e-68
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 1 
Query:    1 LAIIFDLYVECHTPEELGEIKSHFEGLTFELQTGKTTHWQFSPEDIEGVYACSLWSRQLSDCAVRTVTDAIECTEAGVRLYRHLQQGPDFQFARVAWEA 297
            +AIIFDLYVECHTPEELGEIKSHFEGLTFELQTGKTTHWQFSPEDIEGVYACSLWSRQLSDCAVRTVTDAIECTEAGVRLYRHLQQGPDFQFARVAWEA
Sbjct:    1 MAIIFDLYVECHTPEELGEIKSHFEGLTFELQTGKTTHWQFSPEDIEGVYACSLWSRQLSDCAVRTVTDAIECTEAGVRLYRHLQQGPDFQFARVAWEA 99
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BLAST of mRNA_M-pyrifera_M_contig88052.20461.1 vs. uniprot
Match: A0A518ACC9_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518ACC9_9PLAN)

HSP 1 Score: 167 bits (422), Expect = 1.030e-50
Identity = 81/103 (78.64%), Postives = 88/103 (85.44%), Query Frame = 1 
Query:    1 LAIIFDLYVECHTPEELGEIKSHFEGLTFELQTGKTTHWQFSPED----IEGVYACSLWSRQLSDCAVRTVTDAIECTEAGVRLYRHLQQGPDFQFARVAWEA 297
            +AIIFDLY+ECHTPEEL  IKSHFEGLT ELQTGKTTHW F  +      EGV ACSL+S QLS+ AVRTVTDAIECTEAG+RLY+HLQQGPDFQFARVAWEA
Sbjct:    1 MAIIFDLYIECHTPEELAAIKSHFEGLTLELQTGKTTHWVFQSDRNLQASEGVNACSLYSPQLSNSAVRTVTDAIECTEAGIRLYQHLQQGPDFQFARVAWEA 103
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BLAST of mRNA_M-pyrifera_M_contig88052.20461.1 vs. uniprot
Match: UPI00118B11B1 (hypothetical protein n=1 Tax=Gimesia maris TaxID=122 RepID=UPI00118B11B1)

HSP 1 Score: 159 bits (401), Expect = 1.600e-47
Identity = 76/103 (73.79%), Postives = 88/103 (85.44%), Query Frame = 1 
Query:    1 LAIIFDLYVECHTPEELGEIKSHFEGLTFELQTGKTTHWQF-SPEDI---EGVYACSLWSRQLSDCAVRTVTDAIECTEAGVRLYRHLQQGPDFQFARVAWEA 297
            +AIIFD+Y+EC TPEEL  IKSHFEGLT ELQTGK THW F S  D+   EGV+ACSLWS++LSD  V++V+DAIECTEAG+RLY+HLQQGPDF FARVAWEA
Sbjct:    1 MAIIFDIYIECATPEELAAIKSHFEGLTLELQTGKITHWLFQSDRDLQASEGVHACSLWSQELSDWGVQSVSDAIECTEAGIRLYQHLQQGPDFLFARVAWEA 103
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BLAST of mRNA_M-pyrifera_M_contig88052.20461.1 vs. uniprot
Match: A0A2E2BZG5_9PLAN (Uncharacterized protein n=3 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2BZG5_9PLAN)

HSP 1 Score: 155 bits (392), Expect = 3.610e-46
Identity = 77/103 (74.76%), Postives = 87/103 (84.47%), Query Frame = 1 
Query:    1 LAIIFDLYVECHTPEELGEIKSHFEGLTFELQTGKTTHWQF-SPEDI---EGVYACSLWSRQLSDCAVRTVTDAIECTEAGVRLYRHLQQGPDFQFARVAWEA 297
            +AIIFDLY+EC T EEL EIKSHF  LT ELQTGK THW+F S +D+   EGV+ACSL S QLSD AV+TV+DAIECTEAG+RLY+HL QGPDFQFARVAWEA
Sbjct:    1 MAIIFDLYIECTTSEELAEIKSHFSNLTLELQTGKITHWEFASDQDLQASEGVHACSLSSPQLSDWAVQTVSDAIECTEAGIRLYQHLHQGPDFQFARVAWEA 103
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BLAST of mRNA_M-pyrifera_M_contig88052.20461.1 vs. uniprot
Match: A0A517VSL1_9PLAN (Uncharacterized protein n=1 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VSL1_9PLAN)

HSP 1 Score: 130 bits (327), Expect = 2.310e-36
Identity = 64/104 (61.54%), Postives = 76/104 (73.08%), Query Frame = 1 
Query:    1 LAIIFDLYVECHTPEELGEIKSHFEGLTFELQTGKTTHWQF--SPEDIEGVY---ACSLWSRQLSDCAVRTVTDAIECTEAGVRLYRHLQQGPDFQFARVAWEA 297
            +AIIF+LYV+C+TPEEL  +K+HF G T EL TGK T W+F  SP+   G Y   A  LWS  LS   VR++ DAIECTEAG+RLY+HL  GP FQFARVAWEA
Sbjct:    1 MAIIFELYVDCNTPEELAAMKTHFSGFTLELMTGKKTEWEFDCSPDIWAGTYDLHAFGLWSSDLSRSGVRSLVDAIECTEAGIRLYKHLCDGPAFQFARVAWEA 104
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88052.20461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2E7KF59_9PLAN2.740e-6898.99Uncharacterized protein n=3 Tax=Gimesia TaxID=1649... [more]
A0A518ACC9_9PLAN1.030e-5078.64Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
UPI00118B11B11.600e-4773.79hypothetical protein n=1 Tax=Gimesia maris TaxID=1... [more]
A0A2E2BZG5_9PLAN3.610e-4674.76Uncharacterized protein n=3 Tax=Planctomycetaceae ... [more]
A0A517VSL1_9PLAN2.310e-3661.54Uncharacterized protein n=1 Tax=Gimesia aquarii Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88052contigM-pyrifera_M_contig88052:1..297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816790.4714713-CDS-M-pyrifera_M_contig88052:0..2971622816790.4714713-CDS-M-pyrifera_M_contig88052:0..297Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88052 1..297 -
1692278180.0786738-CDS-M-pyrifera_M_contig88052:0..2971692278180.0786738-CDS-M-pyrifera_M_contig88052:0..297Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88052 1..297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88052.20461.1prot_M-pyrifera_M_contig88052.20461.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88052 1..297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88052.20461.1

>prot_M-pyrifera_M_contig88052.20461.1 ID=prot_M-pyrifera_M_contig88052.20461.1|Name=mRNA_M-pyrifera_M_contig88052.20461.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=99bp
LAIIFDLYVECHTPEELGEIKSHFEGLTFELQTGKTTHWQFSPEDIEGVY
ACSLWSRQLSDCAVRTVTDAIECTEAGVRLYRHLQQGPDFQFARVAWEA
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mRNA from alignment at M-pyrifera_M_contig88052:1..297-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88052.20461.1 ID=mRNA_M-pyrifera_M_contig88052.20461.1|Name=mRNA_M-pyrifera_M_contig88052.20461.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=297bp|location=Sequence derived from alignment at M-pyrifera_M_contig88052:1..297- (Macrocystis pyrifera P11B4 male)
TTGGCCATCATCTTTGATCTTTACGTCGAGTGCCACACGCCGGAAGAACT
AGGGGAGATCAAGTCCCATTTCGAAGGGCTCACCTTTGAGCTACAGACGG
GTAAAACGACCCACTGGCAGTTTTCGCCAGAAGATATTGAGGGCGTGTAT
GCCTGCAGCTTATGGTCTCGGCAATTAAGTGACTGTGCAGTGAGAACGGT
CACAGATGCAATTGAATGTACAGAGGCTGGGGTGAGGCTCTATCGTCATT
TGCAGCAGGGACCTGATTTTCAGTTTGCACGTGTGGCCTGGGAGGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88052:1..297-

>mRNA_M-pyrifera_M_contig88052.20461.1 ID=mRNA_M-pyrifera_M_contig88052.20461.1|Name=mRNA_M-pyrifera_M_contig88052.20461.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=594bp|location=Sequence derived from alignment at M-pyrifera_M_contig88052:1..297- (Macrocystis pyrifera P11B4 male)
TTGGCCATCATCTTTGATCTTTACGTCGAGTGCCACACGCCGGAAGAACT
AGGGGAGATCAAGTCCCATTTCGAAGGGCTCACCTTTGAGCTACAGACGG
GTAAAACGACCCACTGGCAGTTTTCGCCAGAAGATATTGAGGGCGTGTAT
GCCTGCAGCTTATGGTCTCGGCAATTAAGTGACTGTGCAGTGAGAACGGT
CACAGATGCAATTGAATGTACAGAGGCTGGGGTGAGGCTCTATCGTCATT
TGCAGCAGGGACCTGATTTTCAGTTTGCACGTGTGGCCTGGGAGGCCTTG
GCCATCATCTTTGATCTTTACGTCGAGTGCCACACGCCGGAAGAACTAGG
GGAGATCAAGTCCCATTTCGAAGGGCTCACCTTTGAGCTACAGACGGGTA
AAACGACCCACTGGCAGTTTTCGCCAGAAGATATTGAGGGCGTGTATGCC
TGCAGCTTATGGTCTCGGCAATTAAGTGACTGTGCAGTGAGAACGGTCAC
AGATGCAATTGAATGTACAGAGGCTGGGGTGAGGCTCTATCGTCATTTGC
AGCAGGGACCTGATTTTCAGTTTGCACGTGTGGCCTGGGAGGCC
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