mRNA_M-pyrifera_M_contig88020.20446.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig88020.20446.1
Unique NamemRNA_M-pyrifera_M_contig88020.20446.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig88020.20446.1 vs. uniprot
Match: A0A0B7JKR8_BIOOC (Adenylate cyclase n=1 Tax=Bionectria ochroleuca TaxID=29856 RepID=A0A0B7JKR8_BIOOC)

HSP 1 Score: 52.4 bits (124), Expect = 8.860e-5
Identity = 43/146 (29.45%), Postives = 66/146 (45.21%), Query Frame = 1 
Query:   25 TVNLSDKDQKHITLDWEEKSTYLTQLIVPKNTIRGFPEELSKLSKLEVLDISNNRNRLEEFGSEEEWAELALEKVDLENNRLTAMPVQLTVLGT----------------------SLASLNLTRNSLESLPEEVSRLSHLERLLL 396
            ++NLS      +  D+ +   +L  +    N  R  P  LS+ SKL  LD+SNNR  +E+    E      L K++L NNRL  +P                              SL  L+L+ N++ SLPE++  L +LE+LL+
Sbjct:  745 SLNLSRNLSLDVPRDFIQSCKHLRDIKFNNNEARRLPPSLSRASKLTYLDVSNNR--VEQLEHAELETLKGLLKMNLANNRLKHLPSHFGEYXXXXXXXXXXXXXEKFPTFLCHLYSLVDLDLSFNTIGSLPEDIGLLKNLEKLLI 888
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig88020.20446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0B7JKR8_BIOOC8.860e-529.45Adenylate cyclase n=1 Tax=Bionectria ochroleuca Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig88020contigM-pyrifera_M_contig88020:106..822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size501
Cds size489
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig88020.20446.1prot_M-pyrifera_M_contig88020.20446.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig88020 118..822 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816789.7176316-UTR-M-pyrifera_M_contig88020:105..1171622816789.7176316-UTR-M-pyrifera_M_contig88020:105..117Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88020 106..117 +
1692278179.6913323-UTR-M-pyrifera_M_contig88020:105..1171692278179.6913323-UTR-M-pyrifera_M_contig88020:105..117Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig88020 106..117 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816789.729644-CDS-M-pyrifera_M_contig88020:117..2921622816789.729644-CDS-M-pyrifera_M_contig88020:117..292Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88020 118..292 +
1692278179.7044663-CDS-M-pyrifera_M_contig88020:117..2921692278179.7044663-CDS-M-pyrifera_M_contig88020:117..292Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88020 118..292 +
1622816789.7411592-CDS-M-pyrifera_M_contig88020:508..8221622816789.7411592-CDS-M-pyrifera_M_contig88020:508..822Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88020 509..822 +
1692278179.7158022-CDS-M-pyrifera_M_contig88020:508..8221692278179.7158022-CDS-M-pyrifera_M_contig88020:508..822Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig88020 509..822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig88020.20446.1

>prot_M-pyrifera_M_contig88020.20446.1 ID=prot_M-pyrifera_M_contig88020.20446.1|Name=mRNA_M-pyrifera_M_contig88020.20446.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
MKNPTVNLSDKDQKHITLDWEEKSTYLTQLIVPKNTIRGFPEELSKLSKL
EVLDISNNRNRLEEFGSEEEWAELALEKVDLENNRLTAMPVQLTVLGTSL
ASLNLTRNSLESLPEEVSRLSHLERLLLAWNSLSAIPESLCSLKFVQELN
LSHNSLTSIPSSI
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mRNA from alignment at M-pyrifera_M_contig88020:106..822+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig88020.20446.1 ID=mRNA_M-pyrifera_M_contig88020.20446.1|Name=mRNA_M-pyrifera_M_contig88020.20446.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=717bp|location=Sequence derived from alignment at M-pyrifera_M_contig88020:106..822+ (Macrocystis pyrifera P11B4 male)
CCCGCGAGTGCAATGAAGAACCCGACGGTGAACCTCTCGGACAAGGACCA
GAAGCACATCACGCTGGACTGGGAGGAGAAGAGTACCTATCTGACGCAGC
TGATCGTGCCCAAGAACACGATCCGTGGCTTCCCAGAGGAGCTCTCCAAG
CTGAGCAAGCTGGAGGTGCTGGACATCTCCAACAACCGTTTCACTTCGCT
GCTCACGGCCTCCACAGCTCCCAAGGAAGGAGAGGGAGAGGAGGGCGAGA
AAGAGAAAGAGGGAGAGAAAGAGGGAGAGCAGAAGGCCACCGACAATGAG
GAGGAGGGCGAGAAGGGGAGCGACGACGTCGCAGAGGCAAAGAAAGAGGG
CGAAACCCACGTTCTCTTCAGCCTCAAGACTCTCAAGAGCCTTTTGCTCG
CAGGAAACCGTCTGGAGGAGTTTGGCAGCGAAGAGGAGTGGGCAGAGCTC
GCTCTCGAGAAGGTGGACCTCGAAAACAACCGTCTCACCGCTATGCCAGT
GCAGCTGACGGTGCTGGGCACCTCTCTTGCGTCGCTGAACCTCACGAGGA
ATTCGCTTGAGTCACTACCGGAGGAAGTCTCCCGCCTCAGTCATCTGGAG
CGACTGTTGTTGGCGTGGAACTCTCTCAGTGCGATCCCTGAGTCTCTCTG
CTCTCTCAAGTTCGTACAAGAGCTCAATCTCTCCCACAACTCTCTCACCT
CCATCCCCTCTTCCATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig88020:106..822+

>mRNA_M-pyrifera_M_contig88020.20446.1 ID=mRNA_M-pyrifera_M_contig88020.20446.1|Name=mRNA_M-pyrifera_M_contig88020.20446.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig88020:106..822+ (Macrocystis pyrifera P11B4 male)
ATGAAGAACCCGACGGTGAACCTCTCGGACAAGGACCAGAAGCACATCAC
GCTGGACTGGGAGGAGAAGAGTACCTATCTGACGCAGCTGATCGTGCCCA
AGAACACGATCCGTGGCTTCCCAGAGGAGCTCTCCAAGCTGAGCAAGCTG
GAGGTGCTGGACATCTCCAACAACCATGAAGAACCCGACGGTGAACCTCT
CGGACAAGGACCAGAAGCACATCACGCTGGACTGGGAGGAGAAGAGTACC
TATCTGACGCAGCTGATCGTGCCCAAGAACACGATCCGTGGCTTCCCAGA
GGAGCTCTCCAAGCTGAGCAAGCTGGAGGTGCTGGACATCTCCAACAACC
GAAACCGTCTGGAGGAGTTTGGCAGCGAAGAGGAGTGGGCAGAGCTCGCT
CTCGAGAAGGTGGACCTCGAAAACAACCGTCTCACCGCTATGCCAGTGCA
GCTGACGGTGCTGGGCACCTCTCTTGCGTCGCTGAACCTCACGAGGAATT
CGCTTGAGTCACTACCGGAGGAAGTCTCCCGCCTCAGTCATCTGGAGCGA
CTGTTGTTGGCGTGGAACTCTCTCAGTGCGATCCCTGAGTCTCTCTGCTC
TCTCAAGTTCGTACAAGAGCTCAATCTCTCCCACAACTCTCTCACCTCCA
TCCCCTCTTCCATCGAAACCGTCTGGAGGAGTTTGGCAGCGAAGAGGAGT
GGGCAGAGCTCGCTCTCGAGAAGGTGGACCTCGAAAACAACCGTCTCACC
GCTATGCCAGTGCAGCTGACGGTGCTGGGCACCTCTCTTGCGTCGCTGAA
CCTCACGAGGAATTCGCTTGAGTCACTACCGGAGGAAGTCTCCCGCCTCA
GTCATCTGGAGCGACTGTTGTTGGCGTGGAACTCTCTCAGTGCGATCCCT
GAGTCTCTCTGCTCTCTCAAGTTCGTACAAGAGCTCAATCTCTCCCACAA
CTCTCTCACCTCCATCCCCTCTTCCATC
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