mRNA_M-pyrifera_M_contig87944.20433.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87944.20433.1
Unique NamemRNA_M-pyrifera_M_contig87944.20433.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87944.20433.1 vs. uniprot
Match: UPI001D19D9E2 (LOW QUALITY PROTEIN: receptor of activated protein C kinase 1-like n=3 Tax=Mustela TaxID=9665 RepID=UPI001D19D9E2)

HSP 1 Score: 223 bits (569), Expect = 1.100e-69
Identity = 108/159 (67.92%), Postives = 124/159 (77.99%), Query Frame = -1
Query:    1 HSHFVEDVVLSSDGQFALSCSWGKY*ATLRLWDLNLGESTRTFSGHKKDALSVAFSSDNRQIVSGSRDKTLKLWNTLGECKHTIDGEGSGAGAHNEWVSCVRFSPNIANPLVVSGGWDKQVKVWNLRDCKLKTTFVGHTGYINCVTVAPDGSLCASGGK 477
            HSHFV DVV+SSDGQFALS SW     TL LWD   G +T  F GH KD LSVAFSSDN+QI SGSRDKT+KL NTLG CK+T+  E     +H+EWVSCVRFSPN +NP++VS GWDK VKVWNL +C LKT  +GHTGY+N +TV+PDGSLCASGGK
Sbjct:   62 HSHFVSDVVISSDGQFALSSSWD---GTLCLWDRTTGTTTCRFVGHTKDVLSVAFSSDNQQIDSGSRDKTIKLXNTLGICKYTVQDE-----SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCLLKTNHIGHTGYLNTITVSPDGSLCASGGK 212          
BLAST of mRNA_M-pyrifera_M_contig87944.20433.1 vs. uniprot
Match: J3KPE3_HUMAN (Receptor of-activated protein C kinase 1 n=32 Tax=Gnathostomata TaxID=7776 RepID=J3KPE3_HUMAN)

HSP 1 Score: 214 bits (546), Expect = 2.260e-67
Identity = 101/142 (71.13%), Postives = 115/142 (80.99%), Query Frame = -1
Query:    1 LSCSWGKY*ATLRLWDLNLGESTRTFSGHKKDALSVAFSSDNRQIVSGSRDKTLKLWNTLGECKHTIDGEGSGAGAHNEWVSCVRFSPNIANPLVVSGGWDKQVKVWNLRDCKLKTTFVGHTGYINCVTVAPDGSLCASGGK 426
            LS S G +  TLRLWDL  G +TR F GH KD LSVAFSSDNRQIVSGSRDKT+KLWNTLG CK+T+  E     +H+EWVSCVRFSPN +NP++VS GWDK VKVWNL +CKLKT  +GHTGY+N VTV+PDGSLCASGGK
Sbjct:   32 LSASRGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE-----SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK 168          
BLAST of mRNA_M-pyrifera_M_contig87944.20433.1 vs. uniprot
Match: A0A6A0H1H0_HYAAZ (Uncharacterized protein n=2 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0H1H0_HYAAZ)

HSP 1 Score: 215 bits (548), Expect = 6.150e-67
Identity = 106/170 (62.35%), Postives = 125/170 (73.53%), Query Frame = -1
Query:    1 HSHFVEDVVLSSDGQFALSCSWGKY*ATLRLWDLNLGESTRTFSGHKK-----------DALSVAFSSDNRQIVSGSRDKTLKLWNTLGECKHTIDGEGSGAGAHNEWVSCVRFSPNIANPLVVSGGWDKQVKVWNLRDCKLKTTFVGHTGYINCVTVAPDGSLCASGGK 477
            H+HF+ DVVLS DG FALS SW K   TLRLWDL  G++TR F  H K           D LSVAFS+DNRQIVSGSRD+T+KLWNTL +CK+TI  +      H +WVSCVRFSP+  NP++VS GWDK VKVW+L +CKLKT   GHTG++N VTV+PDGSLCASGGK
Sbjct:   61 HNHFISDVVLSLDGHFALSGSWDK---TLRLWDLAAGKTTRRFEHHTKVGTAPVRPQRLDVLSVAFSADNRQIVSGSRDRTIKLWNTLAQCKYTIVED-----CHEDWVSCVRFSPSNNNPIIVSSGWDKTVKVWSLTNCKLKTNHYGHTGFLNTVTVSPDGSLCASGGK 222          
BLAST of mRNA_M-pyrifera_M_contig87944.20433.1 vs. uniprot
Match: A0A8H3NXE6_9EURO (Guanine nucleotide-binding protein subunit beta-like protein n=1 Tax=Aspergillus udagawae TaxID=91492 RepID=A0A8H3NXE6_9EURO)

HSP 1 Score: 214 bits (546), Expect = 1.840e-66
Identity = 101/155 (65.16%), Postives = 121/155 (78.06%), Query Frame = -1
Query:    1 VEDVVLSSDGQFALSCSWGKY*ATLRLWDLNLGESTRTFSGHKKDALSVAFSSDNRQIVSGSRDKTLKLWNTLGECKHTIDGEGSGAGAHNEWVSCVRFSPNIANPLVVSGGWDKQVKVWNLRDCKLKTTFVGHTGYINCVTVAPDGSLCASGGK 465
            V   V+SSDG +ALS SW K   +LRLW+L  G++TRTF GH  D LSV+FS+DNRQIVSGSRD+T+KLWNTLG+CK TI  +G     H +WVSCVRFSPN  NP++VS GWDK VKVW L  C+L+T  +GHTGYIN VT++PDGSLCASGGK
Sbjct:   94 VSVQVISSDGAYALSASWDK---SLRLWELATGQTTRTFVGHNNDVLSVSFSADNRQIVSGSRDRTIKLWNTLGDCKFTITDKG-----HADWVSCVRFSPNPQNPVIVSAGWDKLVKVWELASCRLQTDHIGHTGYINTVTISPDGSLCASGGK 240          
BLAST of mRNA_M-pyrifera_M_contig87944.20433.1 vs. uniprot
Match: A0A1S8BBZ5_9PEZI (Guanine nucleotide-binding protein subunit beta-like protein (Fragment) n=1 Tax=Diplodia seriata TaxID=420778 RepID=A0A1S8BBZ5_9PEZI)

HSP 1 Score: 213 bits (541), Expect = 8.570e-66
Identity = 99/150 (66.00%), Postives = 119/150 (79.33%), Query Frame = -1
Query:    1 LSSDGQFALSCSWGKY*ATLRLWDLNLGESTRTFSGHKKDALSVAFSSDNRQIVSGSRDKTLKLWNTLGECKHTIDGEGSGAGAHNEWVSCVRFSPNIANPLVVSGGWDKQVKVWNLRDCKLKTTFVGHTGYINCVTVAPDGSLCASGGK 450
            +SSDG +ALS SW K   TLRLW+L+ G +TR F GH  D LSV+FS+DNRQIVSGSRD+T+KLWNTLG+CK+TI  +G     H EWVSCVRFSPN  NP++VS GWDK VKVW L  C+++T  +GHTGYIN VT++PDGSLCASGGK
Sbjct:    1 ISSDGAYALSSSWDK---TLRLWELSTGVTTRRFVGHTNDVLSVSFSADNRQIVSGSRDRTIKLWNTLGDCKYTITDKG-----HTEWVSCVRFSPNPQNPVIVSAGWDKFVKVWELASCRIQTDHIGHTGYINTVTISPDGSLCASGGK 142          
BLAST of mRNA_M-pyrifera_M_contig87944.20433.1 vs. uniprot
Match: A0A1Z5KC73_FISSO (Guanine nucleotide-binding protein subunit beta-2-like 1 protein n=3 Tax=Bacillariophycidae TaxID=33850 RepID=A0A1Z5KC73_FISSO)

HSP 1 Score: 213 bits (541), Expect = 1.110e-65
Identity = 108/190 (56.84%), Postives = 129/190 (67.89%), Query Frame = -1
Query:    1 HSHFVEDVVLSSDGQFALSCSWGKY*ATLRLWDLNLGESTRTFSGHKKDALSVAFSSDNRQIVSG-------------------------------SRDKTLKLWNTLGECKHTIDGEGSGAGAHNEWVSCVRFSPNIANPLVVSGGWDKQVKVWNLRDCKLKTTFVGHTGYINCVTVAPDGSLCASGGK 477
            H++FV DVVLSSDG FALS SW    A LRLWD++ G++TR F GH+KD LSVAFS DNRQIVSG                               SRDKT++LWNTLGECK+TI G+  G   H+EWVSCVRFSP+ + PL+VS GWD+ VKVWNL +C+L+   VGHTGY+N V V+PDGSL ASGGK
Sbjct:   63 HNYFVSDVVLSSDGAFALSASWD---AELRLWDISTGKTTRRFVGHEKDVLSVAFSVDNRQIVSGMSPLKRYERTDVSHHRIQVVLTCFFYILPSGSRDKTIRLWNTLGECKYTISGDSKG---HSEWVSCVRFSPSQSVPLIVSAGWDRLVKVWNLTNCELRNDLVGHTGYLNTVCVSPDGSLAASGGK 246          
BLAST of mRNA_M-pyrifera_M_contig87944.20433.1 vs. uniprot
Match: A0A2P6TDV5_CHLSO (Receptor of activated kinase C component of 40S small ribosomal subunit isoform B n=3 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TDV5_CHLSO)

HSP 1 Score: 224 bits (572), Expect = 4.840e-65
Identity = 111/169 (65.68%), Postives = 127/169 (75.15%), Query Frame = -1
Query:    1 HSHFVEDVVLSSDGQFALSCSWGKY*ATLRLWDLNLGESTRTFSGHK----------KDALSVAFSSDNRQIVSGSRDKTLKLWNTLGECKHTIDGEGSGAGAHNEWVSCVRFSPNIANPLVVSGGWDKQVKVWNLRDCKLKTTFVGHTGYINCVTVAPDGSLCASGGK 477
            HSH+V+DVV+SSDGQF L+ SW     TLRLWD+  G +TR F GH           KD LSVAFS+DNRQIVSGSRDKT+KLWNTLGECK+TI GE  G   H EWVSCVRFSP   NP++VS GWDK VKVW+L +CKL+   VGH GY+N VTV+PDGSLCASGGK
Sbjct:   64 HSHYVQDVVISSDGQFCLTGSWD---GTLRLWDITTGATTRRFLGHXXXXXXXXXXXKDVLSVAFSADNRQIVSGSRDKTIKLWNTLGECKYTI-GEPDG---HTEWVSCVRFSPVTQNPIIVSAGWDKAVKVWSLTNCKLRNNLVGHQGYVNTVTVSPDGSLCASGGK 225          
BLAST of mRNA_M-pyrifera_M_contig87944.20433.1 vs. uniprot
Match: A0A7S0UK89_9CHLO (Hypothetical protein n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0UK89_9CHLO)

HSP 1 Score: 208 bits (530), Expect = 2.270e-64
Identity = 102/159 (64.15%), Postives = 116/159 (72.96%), Query Frame = -1
Query:    1 HSHFVEDVVLSSDGQFALSCSWGKY*ATLRLWDLNLGESTRTFSGHKKDALSVAFSSDNRQIVSGSRDKTLKLWNTLGECKHTIDGEGSGAGAHNEWVSCVRFSPNIANPLVVSGGWDKQVKVWNLRDCKLKTTFVGHTGYINCVTVAPDGSLCASGGK 477
            HSHFV+DVV S+DG F LS SW     TLRLWDL  G++TR F  H KD LSVAFSS+NRQIVSGSRDKTLK+WNTLGECK T    G     H+ WVSCVRFSP  AN ++VSGGWD  VKVW+  + K      GHTGY+N VT++PD SLCASGGK
Sbjct:   63 HSHFVQDVVGSADGMFCLSASWD---GTLRLWDLKTGQTTRRFVDHTKDVLSVAFSSNNRQIVSGSRDKTLKIWNTLGECKATF---GEAERGHSNWVSCVRFSPT-ANNVIVSGGWDNMVKVWSFDEAKKLFDLAGHTGYVNTVTISPDASLCASGGK 214          
BLAST of mRNA_M-pyrifera_M_contig87944.20433.1 vs. uniprot
Match: A0A8C6V4L2_9GOBI (Receptor for activated C kinase 1 n=3 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6V4L2_9GOBI)

HSP 1 Score: 203 bits (516), Expect = 1.660e-62
Identity = 103/159 (64.78%), Postives = 119/159 (74.84%), Query Frame = -1
Query:    1 HSHFVEDVVLSSDGQFALSCSWGKY*ATLRLWDLNLGESTRTFSGHKKDALSVAFSSDNRQIVSGSRDKTLKLWNTLGECKHTIDGEGSGAGAHNEWVSCVRFSPNIANPLVVSGGWDKQVKVWNLRDCKLKTTFVGHTGYINCVTVAPDGSLCASGGK 477
            HSHFV DVV+SSDGQFALS +W    +TLRL+   L      +  H      VAFS+DNRQIVSGSRDKT+KLWNTLG CK+TI  EG     H+EW SCVRFSPN +NP++VS GWDK VKVWNL +CKLKT  +GH GY+N VTV+PDGSLCASGGK
Sbjct:   50 HSHFVSDVVISSDGQFALSGAWD---STLRLFCQLLN----MWINHS----CVAFSADNRQIVSGSRDKTIKLWNTLGVCKYTIQDEG-----HSEWASCVRFSPNSSNPIIVSCGWDKMVKVWNLANCKLKTNHIGHAGYLNTVTVSPDGSLCASGGK 192          
BLAST of mRNA_M-pyrifera_M_contig87944.20433.1 vs. uniprot
Match: A0A446NLW5_TRITD (Uncharacterized protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446NLW5_TRITD)

HSP 1 Score: 201 bits (511), Expect = 3.140e-62
Identity = 98/154 (63.64%), Postives = 112/154 (72.73%), Query Frame = -1
Query:    1 EDVVLSSDGQFALSCSWGKY*ATLRLWDLNLGESTRTFSGHKKDALSVAFSSDNRQIVSGSRDKTLKLWNTLGECKHTIDGEGSGAGAHNEWVSCVRFSPNIANPLVVSGGWDKQVKVWNLRDCKLKTTFVGHTGYINCVTVAPDGSLCASGGK 462
            E +VLSSDGQFALS SW      LRLWDL+ G +TR F GH+KD LSVAFS DNRQIVS SRD+T+KLWNTLGECK+TI G+  G   H  WVSCVRFSPN   P +VSG W       NL +CKL+ T  GH GY++ V V+PDGSLCASGGK
Sbjct:    6 ESLVLSSDGQFALSGSWD---GELRLWDLSTGVTTRRFVGHEKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTIGGDLGGGEGHTGWVSCVRFSPNNFAPTIVSGSWXXXXXXXNLTNCKLRCTLDGHGGYVSAVAVSPDGSLCASGGK 156          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87944.20433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001D19D9E21.100e-6967.92LOW QUALITY PROTEIN: receptor of activated protein... [more]
J3KPE3_HUMAN2.260e-6771.13Receptor of-activated protein C kinase 1 n=32 Tax=... [more]
A0A6A0H1H0_HYAAZ6.150e-6762.35Uncharacterized protein n=2 Tax=Hyalella azteca Ta... [more]
A0A8H3NXE6_9EURO1.840e-6665.16Guanine nucleotide-binding protein subunit beta-li... [more]
A0A1S8BBZ5_9PEZI8.570e-6666.00Guanine nucleotide-binding protein subunit beta-li... [more]
A0A1Z5KC73_FISSO1.110e-6556.84Guanine nucleotide-binding protein subunit beta-2-... [more]
A0A2P6TDV5_CHLSO4.840e-6565.68Receptor of activated kinase C component of 40S sm... [more]
A0A7S0UK89_9CHLO2.270e-6464.15Hypothetical protein n=1 Tax=Polytomella parva Tax... [more]
A0A8C6V4L2_9GOBI1.660e-6264.78Receptor for activated C kinase 1 n=3 Tax=Neogobiu... [more]
A0A446NLW5_TRITD3.140e-6263.64Uncharacterized protein n=1 Tax=Triticum turgidum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87944contigM-pyrifera_M_contig87944:3..569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size480
Cds size480
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816789.0962913-CDS-M-pyrifera_M_contig87944:2..3991622816789.0962913-CDS-M-pyrifera_M_contig87944:2..399Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87944 3..399 +
1692278179.346702-CDS-M-pyrifera_M_contig87944:2..3991692278179.346702-CDS-M-pyrifera_M_contig87944:2..399Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87944 3..399 +
1622816789.1086993-CDS-M-pyrifera_M_contig87944:486..5691622816789.1086993-CDS-M-pyrifera_M_contig87944:486..569Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87944 487..569 +
1692278179.3570292-CDS-M-pyrifera_M_contig87944:486..5691692278179.3570292-CDS-M-pyrifera_M_contig87944:486..569Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87944 487..569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87944.20433.1prot_M-pyrifera_M_contig87944.20433.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87944 3..569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87944.20433.1

>prot_M-pyrifera_M_contig87944.20433.1 ID=prot_M-pyrifera_M_contig87944.20433.1|Name=mRNA_M-pyrifera_M_contig87944.20433.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=160bp
LAARCAEGSVGGDGHAVDVSSVAHEGGLELAVPEVPHLDLLVPSARDNQR
VGDVGGEAHAADPLVVGTGAGSLTVNGVLALSESVPELQGLVARAGHDLA
VVGGEGNAERILLVATESASGLTEVEVPQAQSGSILTPGAGESELAIRGQ
NNVLNEVRVT
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mRNA from alignment at M-pyrifera_M_contig87944:3..569+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87944.20433.1 ID=mRNA_M-pyrifera_M_contig87944.20433.1|Name=mRNA_M-pyrifera_M_contig87944.20433.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=567bp|location=Sequence derived from alignment at M-pyrifera_M_contig87944:3..569+ (Macrocystis pyrifera P11B4 male)
CTTGCCGCCAGATGCGCAGAGGGATCCGTCGGGGGCGACGGTCACGCAGT TGATGTATCCAGTGTGGCCCACGAAGGTGGTCTTGAGCTTGCAGTCCCTG AGGTTCCACACCTTGACCTGCTTGTCCCATCCGCCAGAGACAACCAGAGG GTTGGCGATGTTGGGGGAGAAGCGCACGCAGCTGACCCACTCGTTGTGGG CACCGGCGCCGGATCCCTCACCGTCAATGGTGTGCTTGCACTCTCCGAGA GTGTTCCAGAGCTTCAGGGTCTTGTCGCGAGAGCCGGACACGATCTGGCG GTTGTCGGAGGAGAAGGCAACGCTGAGCGCATCCTTCTTGTGGCCACTGA AAGTGCGAGTGGACTCACCGAGGTTGAGGTCCCACAGGCGCAGAGTGGTG TCTGGAAGCTACAGTTAGACCGGTGTAGAATTGGGCAGGGCAGACTGGTC GCCGATGTCCGGCAGCGGCGAACGAGCGGAAAAGGCTCAATACTTACCCC AGGAGCAGGAGAGAGCGAACTGGCCATCAGAGGACAGAACAACGTCCTCA ACGAAGTGAGAGTGACT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87944:3..569+

>mRNA_M-pyrifera_M_contig87944.20433.1 ID=mRNA_M-pyrifera_M_contig87944.20433.1|Name=mRNA_M-pyrifera_M_contig87944.20433.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig87944:3..569+ (Macrocystis pyrifera P11B4 male)
CTTGCCGCCAGATGCGCAGAGGGATCCGTCGGGGGCGACGGTCACGCAGT
TGATGTATCCAGTGTGGCCCACGAAGGTGGTCTTGAGCTTGCAGTCCCTG
AGGTTCCACACCTTGACCTGCTTGTCCCATCCGCCAGAGACAACCAGAGG
GTTGGCGATGTTGGGGGAGAAGCGCACGCAGCTGACCCACTCGTTGTGGG
CACCGGCGCCGGATCCCTCACCGTCAATGGTGTGCTTGCACTCTCCGAGA
GTGTTCCAGAGCTTCAGGGTCTTGTCGCGAGAGCCGGACACGATCTGGCG
GTTGTCGGAGGAGAAGGCAACGCTGAGCGCATCCTTCTTGTGGCCACTGA
AAGTGCGAGTGGACTCACCGAGGTTGAGGTCCCACAGGCGCAGAGTGCTT
GCCGCCAGATGCGCAGAGGGATCCGTCGGGGGCGACGGTCACGCAGTTGA
TGTATCCAGTGTGGCCCACGAAGGTGGTCTTGAGCTTGCAGTCCCTGAGG
TTCCACACCTTGACCTGCTTGTCCCATCCGCCAGAGACAACCAGAGGGTT
GGCGATGTTGGGGGAGAAGCGCACGCAGCTGACCCACTCGTTGTGGGCAC
CGGCGCCGGATCCCTCACCGTCAATGGTGTGCTTGCACTCTCCGAGAGTG
TTCCAGAGCTTCAGGGTCTTGTCGCGAGAGCCGGACACGATCTGGCGGTT
GTCGGAGGAGAAGGCAACGCTGAGCGCATCCTTCTTGTGGCCACTGAAAG
TGCGAGTGGACTCACCGAGGTTGAGGTCCCACAGGCGCAGAGTGGCTCAA
TACTTACCCCAGGAGCAGGAGAGAGCGAACTGGCCATCAGAGGACAGAAC
AACGTCCTCAACGAAGTGAGAGTGACTGCTCAATACTTACCCCAGGAGCA
GGAGAGAGCGAACTGGCCATCAGAGGACAGAACAACGTCCTCAACGAAGT
GAGAGTGACT
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