mRNA_M-pyrifera_M_contig87932.20432.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87932.20432.1
Unique NamemRNA_M-pyrifera_M_contig87932.20432.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig87932.20432.1 vs. uniprot
Match: A0A6H5KHJ2_9PHAE (Ferredoxin--NADP(+) reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHJ2_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.410e-15
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 QGMMPGITDMLARVSSERGISWDDKLKELKSKKQWHVEVY 120
            +GMMPGITDMLARV+ ERGISWD KLKELKSK QWHVEVY
Sbjct:  345 KGMMPGITDMLARVAGERGISWDAKLKELKSKGQWHVEVY 384
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BLAST of mRNA_M-pyrifera_M_contig87932.20432.1 vs. uniprot
Match: A0A830C5G6_9LAMI (Ferredoxin--NADP(+) reductase (Fragment) n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830C5G6_9LAMI)

HSP 1 Score: 67.4 bits (163), Expect = 4.940e-12
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 QGMMPGITDMLARVSSERGISWDDKLKELKSKKQWHVEVY 120
            +GMMPGI D L RV+ ERG SWD+KLK+LK+ KQWHVEVY
Sbjct:  344 KGMMPGIQDTLRRVAEERGESWDEKLKQLKTNKQWHVEVY 383
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BLAST of mRNA_M-pyrifera_M_contig87932.20432.1 vs. uniprot
Match: A0A6I9TV88_SESIN (Ferredoxin--NADP reductase, chloroplastic n=3 Tax=Lamiales TaxID=4143 RepID=A0A6I9TV88_SESIN)

HSP 1 Score: 65.9 bits (159), Expect = 1.770e-11
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 QGMMPGITDMLARVSSERGISWDDKLKELKSKKQWHVEVY 120
            +GMMPGI D L RV+ +RG SWD+KL +LK KKQWHVEVY
Sbjct:  354 KGMMPGIQDTLKRVAEQRGESWDEKLSQLKKKKQWHVEVY 393
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BLAST of mRNA_M-pyrifera_M_contig87932.20432.1 vs. uniprot
Match: A0A7C9DUD6_OPUST (Ferredoxin--NADP reductase, chloroplastic n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9DUD6_OPUST)

HSP 1 Score: 65.5 bits (158), Expect = 2.380e-11
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 QGMMPGITDMLARVSSERGISWDDKLKELKSKKQWHVEVY 120
            +GMMPGI D L RV+ ERG +WD+KL +LK KKQWHVEVY
Sbjct:  338 KGMMPGIQDTLKRVAEERGENWDEKLAQLKKKKQWHVEVY 377
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BLAST of mRNA_M-pyrifera_M_contig87932.20432.1 vs. uniprot
Match: A0A8J5XIC4_DIALT (Ferredoxin--NADP(+) reductase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XIC4_DIALT)

HSP 1 Score: 65.1 bits (157), Expect = 3.100e-11
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 QGMMPGITDMLARVSSERGISWDDKLKELKSKKQWHVEVY 120
            +GMMPGIT+ML RV+  +GISW++KL+ELK   QWHVEVY
Sbjct:  311 KGMMPGITEMLERVAQSKGISWEEKLEELKKNGQWHVEVY 350
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BLAST of mRNA_M-pyrifera_M_contig87932.20432.1 vs. uniprot
Match: Q5ENS8_ISOGA (Ferredoxin--NADP(+) reductase (Fragment) n=1 Tax=Isochrysis galbana TaxID=37099 RepID=Q5ENS8_ISOGA)

HSP 1 Score: 65.1 bits (157), Expect = 3.210e-11
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 QGMMPGITDMLARVSSERGISWDDKLKELKSKKQWHVEVY 120
            +GMMPGIT+ML  VS  +GI W+DKLKE KSK QWHVEVY
Sbjct:  328 KGMMPGITEMLEGVSKAKGIVWEDKLKEWKSKGQWHVEVY 367
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BLAST of mRNA_M-pyrifera_M_contig87932.20432.1 vs. uniprot
Match: A0A6I9QEH8_ELAGV (Ferredoxin--NADP reductase, chloroplastic n=4 Tax=Arecaceae TaxID=4710 RepID=A0A6I9QEH8_ELAGV)

HSP 1 Score: 63.5 bits (153), Expect = 1.150e-10
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 QGMMPGITDMLARVSSERGISWDDKLKELKSKKQWHVEVY 120
            +GMMPGI D L RV+ +RG +WD+KL +L+ KKQWHVEVY
Sbjct:  340 KGMMPGIQDTLKRVAEQRGENWDEKLSQLRKKKQWHVEVY 379
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BLAST of mRNA_M-pyrifera_M_contig87932.20432.1 vs. uniprot
Match: A0A7S2KQS2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KQS2_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.570e-10
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    1 QGMMPGITDMLARVSSERGISWDDKLKELKSKKQWHVEVY 120
            +GMMPGI + L +V+ +RGI W+DKLKELK+  QWHVEVY
Sbjct:  170 KGMMPGILEALEQVAKDRGIVWEDKLKELKANGQWHVEVY 209
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BLAST of mRNA_M-pyrifera_M_contig87932.20432.1 vs. uniprot
Match: B9GG14_POPTR (Ferredoxin--NADP reductase, chloroplastic n=10 Tax=Saliceae TaxID=238069 RepID=B9GG14_POPTR)

HSP 1 Score: 63.2 bits (152), Expect = 1.580e-10
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 QGMMPGITDMLARVSSERGISWDDKLKELKSKKQWHVEVY 120
            +GMMPGI D L +V+ +RG  WD+KL +LK KKQWHVEVY
Sbjct:  339 KGMMPGIQDTLKKVAEQRGEKWDEKLSQLKKKKQWHVEVY 378
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BLAST of mRNA_M-pyrifera_M_contig87932.20432.1 vs. uniprot
Match: A0A7S4BB40_CHRCT (Ferredoxin--NADP(+) reductase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BB40_CHRCT)

HSP 1 Score: 62.8 bits (151), Expect = 2.220e-10
Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    1 QGMMPGITDMLARVSSERGISWDDKLKELKSKKQWHVEVY 120
            +GMMPGIT+ML +V++ERGISW+  L++LK   QWHVEVY
Sbjct:  389 KGMMPGITEMLEKVATERGISWETTLEQLKQNGQWHVEVY 428
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87932.20432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHJ2_9PHAE2.410e-1587.50Ferredoxin--NADP(+) reductase n=2 Tax=Ectocarpus T... [more]
A0A830C5G6_9LAMI4.940e-1272.50Ferredoxin--NADP(+) reductase (Fragment) n=1 Tax=P... [more]
A0A6I9TV88_SESIN1.770e-1170.00Ferredoxin--NADP reductase, chloroplastic n=3 Tax=... [more]
A0A7C9DUD6_OPUST2.380e-1170.00Ferredoxin--NADP reductase, chloroplastic n=1 Tax=... [more]
A0A8J5XIC4_DIALT3.100e-1167.50Ferredoxin--NADP(+) reductase n=1 Tax=Diacronema l... [more]
Q5ENS8_ISOGA3.210e-1172.50Ferredoxin--NADP(+) reductase (Fragment) n=1 Tax=I... [more]
A0A6I9QEH8_ELAGV1.150e-1065.00Ferredoxin--NADP reductase, chloroplastic n=4 Tax=... [more]
A0A7S2KQS2_9STRA1.570e-1065.00Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
B9GG14_POPTR1.580e-1065.00Ferredoxin--NADP reductase, chloroplastic n=10 Tax... [more]
A0A7S4BB40_CHRCT2.220e-1065.00Ferredoxin--NADP(+) reductase n=1 Tax=Chrysotila c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87932contigM-pyrifera_M_contig87932:474..596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue3.1e-11
Seed eggNOG ortholog2880.D7FSR5
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.NADPH-hemoprotein reductase activity
EggNOG OGsCOG0369@1,KOG1158@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size123
Cds size117
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816789.0479853-CDS-M-pyrifera_M_contig87932:473..5901622816789.0479853-CDS-M-pyrifera_M_contig87932:473..590Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87932 474..590 -
1692278179.3229506-CDS-M-pyrifera_M_contig87932:473..5901692278179.3229506-CDS-M-pyrifera_M_contig87932:473..590Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87932 474..590 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816789.0604327-UTR-M-pyrifera_M_contig87932:590..5961622816789.0604327-UTR-M-pyrifera_M_contig87932:590..596Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig87932 591..596 -
1692278179.3340452-UTR-M-pyrifera_M_contig87932:590..5961692278179.3340452-UTR-M-pyrifera_M_contig87932:590..596Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig87932 591..596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87932.20432.1prot_M-pyrifera_M_contig87932.20432.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87932 474..590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87932.20432.1

>prot_M-pyrifera_M_contig87932.20432.1 ID=prot_M-pyrifera_M_contig87932.20432.1|Name=mRNA_M-pyrifera_M_contig87932.20432.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=39bp
MMPGITDMLARVSSERGISWDDKLKELKSKKQWHVEVY*
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mRNA from alignment at M-pyrifera_M_contig87932:474..596-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87932.20432.1 ID=mRNA_M-pyrifera_M_contig87932.20432.1|Name=mRNA_M-pyrifera_M_contig87932.20432.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=123bp|location=Sequence derived from alignment at M-pyrifera_M_contig87932:474..596- (Macrocystis pyrifera P11B4 male)
CAGGGTATGATGCCGGGCATCACCGACATGCTGGCCAGGGTGTCGAGCGA
GCGGGGTATCTCGTGGGATGATAAGCTCAAGGAGCTCAAGAGCAAGAAGC
AGTGGCACGTTGAGGTCTACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87932:474..596-

>mRNA_M-pyrifera_M_contig87932.20432.1 ID=mRNA_M-pyrifera_M_contig87932.20432.1|Name=mRNA_M-pyrifera_M_contig87932.20432.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=234bp|location=Sequence derived from alignment at M-pyrifera_M_contig87932:474..596- (Macrocystis pyrifera P11B4 male)
ATGATGCCGGGCATCACCGACATGCTGGCCAGGGTGTCGAGCGAGCGGGG
TATCTCGTGGGATGATAAGCTCAAGGAGCTCAAGAGCAAGAAGCAGTGGC
ACGTTGAGGTCTACTGAATGATGCCGGGCATCACCGACATGCTGGCCAGG
GTGTCGAGCGAGCGGGGTATCTCGTGGGATGATAAGCTCAAGGAGCTCAA
GAGCAAGAAGCAGTGGCACGTTGAGGTCTACTGA
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