mRNA_M-pyrifera_M_contig87860.20413.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87860.20413.1
Unique NamemRNA_M-pyrifera_M_contig87860.20413.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87860.20413.1 vs. uniprot
Match: A0A1V9YBE3_9STRA (Sphingomyelin phosphodiesterase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YBE3_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 2.650e-8
Identity = 44/123 (35.77%), Postives = 63/123 (51.22%), Query Frame = 1
Query:    1 WRQALIDGGLLILSRFPIEGDGALAPAFREFPRGTGIEAYVAKGILRATLRVPASGAGDGPDSQLVHVFCLHTNAGAHRVTDNASAMEQIEMAAAFVGEQVASARRAGHEEALAVMGGDLNVD 369
            W   ++DGGLLILSR+PI    A       F +G G +   AKG+  A L++ AS       +QL HVF  HT AG  +   +   + Q++   AF+      A+ AGH +   V+ GD N+D
Sbjct:  501 WSPQIMDGGLLILSRYPIVAHDAWV-----FSQGRGSDGLCAKGVAYALLQIDAS-------TQL-HVFTTHTQAGEDKDATDIR-LHQLDELGAFI-----RAKCAGHRDIPIVVAGDFNLD 604          
BLAST of mRNA_M-pyrifera_M_contig87860.20413.1 vs. uniprot
Match: A0A067CZH4_SAPPC (Sphingomyelin phosphodiesterase n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CZH4_SAPPC)

HSP 1 Score: 60.5 bits (145), Expect = 3.060e-8
Identity = 46/123 (37.40%), Postives = 59/123 (47.97%), Query Frame = 1
Query:    1 WRQALIDGGLLILSRFPIEGDGALAPAFREFPRGTGIEAYVAKGILRATLRVPASGAGDGPDSQLVHVFCLHTNAGAHRVTDNASAMEQIEMAAAFVGEQVASARRAGHEEALAVMGGDLNVD 369
            W + L+DGGLLILSR+PI   G        F RG G +   AKG++ A L+V AS          +HVF  HT AG       A  M Q+   AAFV    A        +A  ++ GD N+D
Sbjct:   80 WSRKLMDGGLLILSRYPIVRHGQWV-----FTRGRGSDGVCAKGVVYAQLQVDASST--------LHVFTTHTQAGEDEAA-TAIRMHQLRELAAFVHATCACVA-----DAPILIAGDFNLD 183          
BLAST of mRNA_M-pyrifera_M_contig87860.20413.1 vs. uniprot
Match: A0A3R7BU16_9STRA (Sphingomyelin phosphodiesterase (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7BU16_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.430e-6
Identity = 43/123 (34.96%), Postives = 59/123 (47.97%), Query Frame = 1
Query:    1 WRQALIDGGLLILSRFPIEGDGALAPAFREFPRGTGIEAYVAKGILRATLRVPASGAGDGPDSQLVHVFCLHTNAGAHRVTDNASAMEQIEMAAAFVGEQVASARRAGHEEALAVMGGDLNVD 369
            W + L+DGGLLILSR+PI           +F    G +A  AKG++ A L++ + G        L+ VF  HT AG  +V  +     QIE  A FV      A         A++GGD N+D
Sbjct:   80 WSRQLVDGGLLILSRYPI-----CQTKSHQFRDSCGSDALAAKGVVYAQLQIESQGT-------LLDVFTTHTQAGQGQVATSIR-WRQIEELAWFVHTTRTDATTP------AILGGDFNLD 183          
BLAST of mRNA_M-pyrifera_M_contig87860.20413.1 vs. uniprot
Match: T0QTU9_SAPDV (Sphingomyelin phosphodiesterase n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QTU9_SAPDV)

HSP 1 Score: 55.5 bits (132), Expect = 1.800e-6
Identity = 44/123 (35.77%), Postives = 58/123 (47.15%), Query Frame = 1
Query:    1 WRQALIDGGLLILSRFPIEGDGALAPAFREFPRGTGIEAYVAKGILRATLRVPASGAGDGPDSQLVHVFCLHTNAGAHRVTDNASAMEQIEMAAAFVGEQVASARRAGHEEALAVMGGDLNVD 369
            W + L+DGGLLILSR+PI            F +G G +   AKG++ A L+V AS          +HVF  HT AG       A  M Q+   AAFV    AS       +   ++ GD N+D
Sbjct:   80 WSRQLMDGGLLILSRYPIVRHDQWV-----FTQGRGSDGICAKGVVYAQLQVDASST--------LHVFTTHTQAGEDEAA-TAIRMHQLRELAAFVHATCASV-----VDDPILVAGDFNLD 183          
BLAST of mRNA_M-pyrifera_M_contig87860.20413.1 vs. uniprot
Match: A0A662XWD4_9STRA (Sphingomyelin phosphodiesterase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XWD4_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.000e-6
Identity = 36/76 (47.37%), Postives = 44/76 (57.89%), Query Frame = 1
Query:   13 LIDGGLLILSRFPIEGDGALAPAFREFPRGTGIEAYVAKGILRATLRVPASGAGDGPD-SQLVHVFCLHTNAGAHR 237
            LIDGGLLILSRFPI     LA     F +G+G +   AKG+L A +++        PD S  +HVF  HT AG HR
Sbjct:  268 LIDGGLLILSRFPIVERDQLA-----FSQGSGSDGICAKGVLYARIQL-------SPDLSDSLHVFTTHTQAGDHR 331          
BLAST of mRNA_M-pyrifera_M_contig87860.20413.1 vs. uniprot
Match: W4H2T3_9STRA (Sphingomyelin phosphodiesterase n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H2T3_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.510e-6
Identity = 43/123 (34.96%), Postives = 58/123 (47.15%), Query Frame = 1
Query:    1 WRQALIDGGLLILSRFPIEGDGALAPAFREFPRGTGIEAYVAKGILRATLRVPASGAGDGPDSQLVHVFCLHTNAGAHRVTDNASAMEQIEMAAAFVGEQVASARRAGHEEALAVMGGDLNVD 369
            W + L+DGGLLILSR+PI           +F    G +A  AKG++ A L++ + G        L+ VF  HT AG  +V        QIE  A FV      A         A++GGD N+D
Sbjct:   80 WSRQLVDGGLLILSRYPI-----CQTKSHQFRDSCGSDALAAKGVVYAQLQIESQGT-------LLDVFTTHTQAGQGQVATTIR-WRQIEELAWFVHTTRTDATTP------AILGGDFNLD 183          
BLAST of mRNA_M-pyrifera_M_contig87860.20413.1 vs. uniprot
Match: A0A3R7WG34_9STRA (Sphingomyelin phosphodiesterase n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7WG34_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.940e-6
Identity = 43/123 (34.96%), Postives = 58/123 (47.15%), Query Frame = 1
Query:    1 WRQALIDGGLLILSRFPIEGDGALAPAFREFPRGTGIEAYVAKGILRATLRVPASGAGDGPDSQLVHVFCLHTNAGAHRVTDNASAMEQIEMAAAFVGEQVASARRAGHEEALAVMGGDLNVD 369
            W + L+DGGLLILSR+PI           +F    G +A  AKG++ A L++ + G        L+ VF  HT AG  +V        QIE  A FV      A         A++GGD N+D
Sbjct:   80 WSRQLVDGGLLILSRYPI-----CQTKSHQFRDSCGSDALAAKGVVYAQLQIESQGT-------LLDVFTTHTQAGQGQVATTIR-WRQIEELAWFVHTTRTDATTP------AILGGDFNLD 183          
BLAST of mRNA_M-pyrifera_M_contig87860.20413.1 vs. uniprot
Match: A0A485KF87_9STRA (Sphingomyelin phosphodiesterase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KF87_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.350e-6
Identity = 43/119 (36.13%), Postives = 62/119 (52.10%), Query Frame = 1
Query:   13 LIDGGLLILSRFPIEGDGALAPAFREFPRGTGIEAYVAKGILRATLRVPASGAGDGPDSQLVHVFCLHTNAGAHRVTDNASAMEQIEMAAAFVGEQVASARRAGHEEALAVMGGDLNVD 369
            L+DGGLLILSRFPI        A   F  G G +   +KG++ A ++V      + P + LV++F  HT AG  +   +    + +E+A  FV       R  GH E  A++GGD N+D
Sbjct:   84 LVDGGLLILSRFPI-----CKAAVHRFSVGCGSDGLASKGVVFAQVQV----VPNNPRA-LVNLFTTHTQAGIRKDATDIRWRQILELAR-FV-------RTHGHPEIPALVGGDFNLD 184          
BLAST of mRNA_M-pyrifera_M_contig87860.20413.1 vs. uniprot
Match: A0A6A7GA21_9CRUS (Sphingomyelin phosphodiesterase n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GA21_9CRUS)

HSP 1 Score: 54.7 bits (130), Expect = 3.430e-6
Identity = 32/77 (41.56%), Postives = 42/77 (54.55%), Query Frame = 1
Query:    1 WRQALIDGGLLILSRFPIEGDGALAPAFREFPRGTGIEAYVAKGILRATLRVPASGAGDGPDSQLVHVFCLHTNAGA 231
            W   LIDGGL ILSRFPI+    +      F  G+GI+    KG++ A +R+PA    D      +HVF  HT AG+
Sbjct:   88 WSLKLIDGGLAILSRFPIKIRDKMV-----FSAGSGIDGLATKGVVYAKIRIPALKKMD------LHVFTTHTQAGS 153          
BLAST of mRNA_M-pyrifera_M_contig87860.20413.1 vs. uniprot
Match: A0A5D6YBN2_9STRA (Sphingomyelin phosphodiesterase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBN2_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 5.130e-6
Identity = 46/119 (38.66%), Postives = 63/119 (52.94%), Query Frame = 1
Query:   13 LIDGGLLILSRFPIEGDGALAPAFREFPRGTGIEAYVAKGILRATLRVPASGAGDGPDSQLVHVFCLHTNAGAHRVTDNASAMEQIEMAAAFVGEQVASARRAGHEEALAVMGGDLNVD 369
            LIDGGLLILSRFPI   G  A     + +G+G +   AKG+L A +++    + D  DS  +HVF  HT AG  R+ + A    Q++    FV   V   R     EA  ++ GD N+D
Sbjct:  399 LIDGGLLILSRFPIVERGQHA-----YSQGSGSDGICAKGVLYARVQL----SPDLGDS--LHVFTTHTQAG-DRLKEYAIRAAQLQEMQRFVARTVRDDR-----EAPVLITGDFNLD 500          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87860.20413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A1V9YBE3_9STRA2.650e-835.77Sphingomyelin phosphodiesterase n=1 Tax=Achlya hyp... [more]
A0A067CZH4_SAPPC3.060e-837.40Sphingomyelin phosphodiesterase n=1 Tax=Saprolegni... [more]
A0A3R7BU16_9STRA1.430e-634.96Sphingomyelin phosphodiesterase (Fragment) n=2 Tax... [more]
T0QTU9_SAPDV1.800e-635.77Sphingomyelin phosphodiesterase n=1 Tax=Saprolegni... [more]
A0A662XWD4_9STRA2.000e-647.37Sphingomyelin phosphodiesterase n=2 Tax=Nothophyto... [more]
W4H2T3_9STRA2.510e-634.96Sphingomyelin phosphodiesterase n=2 Tax=Aphanomyce... [more]
A0A3R7WG34_9STRA2.940e-634.96Sphingomyelin phosphodiesterase n=9 Tax=Aphanomyce... [more]
A0A485KF87_9STRA3.350e-636.13Sphingomyelin phosphodiesterase n=1 Tax=Aphanomyce... [more]
A0A6A7GA21_9CRUS3.430e-641.56Sphingomyelin phosphodiesterase n=1 Tax=Hirondelle... [more]
A0A5D6YBN2_9STRA5.130e-638.66Sphingomyelin phosphodiesterase n=1 Tax=Pythium br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87860contigM-pyrifera_M_contig87860:388..756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816788.1835792-CDS-M-pyrifera_M_contig87860:387..7561622816788.1835792-CDS-M-pyrifera_M_contig87860:387..756Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87860 388..756 -
1692278178.8600888-CDS-M-pyrifera_M_contig87860:387..7561692278178.8600888-CDS-M-pyrifera_M_contig87860:387..756Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87860 388..756 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87860.20413.1prot_M-pyrifera_M_contig87860.20413.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87860 388..756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87860.20413.1

>prot_M-pyrifera_M_contig87860.20413.1 ID=prot_M-pyrifera_M_contig87860.20413.1|Name=mRNA_M-pyrifera_M_contig87860.20413.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
WRQALIDGGLLILSRFPIEGDGALAPAFREFPRGTGIEAYVAKGILRATL
RVPASGAGDGPDSQLVHVFCLHTNAGAHRVTDNASAMEQIEMAAAFVGEQ
VASARRAGHEEALAVMGGDLNVD
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mRNA from alignment at M-pyrifera_M_contig87860:388..756-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87860.20413.1 ID=mRNA_M-pyrifera_M_contig87860.20413.1|Name=mRNA_M-pyrifera_M_contig87860.20413.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=369bp|location=Sequence derived from alignment at M-pyrifera_M_contig87860:388..756- (Macrocystis pyrifera P11B4 male)
TGGCGTCAGGCGCTCATCGACGGCGGCCTCCTCATCCTCAGCAGGTTCCC CATCGAGGGCGACGGCGCGCTGGCGCCGGCGTTCCGCGAGTTCCCGCGCG GCACCGGCATCGAGGCGTACGTGGCCAAGGGGATCCTGCGCGCGACGCTG CGCGTGCCCGCGTCCGGCGCCGGCGACGGGCCGGACTCGCAGCTGGTGCA CGTGTTCTGCCTGCACACGAACGCGGGCGCGCACCGTGTGACTGACAACG CGTCCGCGATGGAGCAGATTGAGATGGCGGCAGCGTTTGTGGGCGAGCAG GTGGCCAGCGCGCGACGCGCCGGCCACGAGGAGGCGCTGGCGGTGATGGG TGGCGACCTGAACGTGGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87860:388..756-

>mRNA_M-pyrifera_M_contig87860.20413.1 ID=mRNA_M-pyrifera_M_contig87860.20413.1|Name=mRNA_M-pyrifera_M_contig87860.20413.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig87860:388..756- (Macrocystis pyrifera P11B4 male)
TGGCGTCAGGCGCTCATCGACGGCGGCCTCCTCATCCTCAGCAGGTTCCC
CATCGAGGGCGACGGCGCGCTGGCGCCGGCGTTCCGCGAGTTCCCGCGCG
GCACCGGCATCGAGGCGTACGTGGCCAAGGGGATCCTGCGCGCGACGCTG
CGCGTGCCCGCGTCCGGCGCCGGCGACGGGCCGGACTCGCAGCTGGTGCA
CGTGTTCTGCCTGCACACGAACGCGGGCGCGCACCGTGTGACTGACAACG
CGTCCGCGATGGAGCAGATTGAGATGGCGGCAGCGTTTGTGGGCGAGCAG
GTGGCCAGCGCGCGACGCGCCGGCCACGAGGAGGCGCTGGCGGTGATGGG
TGGCGACCTGAACGTGGACTGGCGTCAGGCGCTCATCGACGGCGGCCTCC
TCATCCTCAGCAGGTTCCCCATCGAGGGCGACGGCGCGCTGGCGCCGGCG
TTCCGCGAGTTCCCGCGCGGCACCGGCATCGAGGCGTACGTGGCCAAGGG
GATCCTGCGCGCGACGCTGCGCGTGCCCGCGTCCGGCGCCGGCGACGGGC
CGGACTCGCAGCTGGTGCACGTGTTCTGCCTGCACACGAACGCGGGCGCG
CACCGTGTGACTGACAACGCGTCCGCGATGGAGCAGATTGAGATGGCGGC
AGCGTTTGTGGGCGAGCAGGTGGCCAGCGCGCGACGCGCCGGCCACGAGG
AGGCGCTGGCGGTGATGGGTGGCGACCTGAACGTGGAC
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