mRNA_M-pyrifera_M_contig109782.2040.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109782.2040.1
Unique NamemRNA_M-pyrifera_M_contig109782.2040.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109782.2040.1 vs. uniprot
Match: D7FR21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR21_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 2.550e-31
Identity = 62/138 (44.93%), Postives = 83/138 (60.14%), Query Frame = 1
Query:    4 QVYNQEHTADIVCLAVHPSGRFVATGQLGKRPTVVVWDADTGATLSTLDGFHARAVTHVAFHAHSDLLFTVGLDDNHSVAVYDWRRALHRANSKGDRGKVLDVAWSPAKSEGAPVLQVGVRHARLWT-VDGRALKSSR 414
            Q +   H+ D  CLA  P G  VATG + +RPT++VW  DTG  + TL GFH RA+T ++F      L ++G DD+HS+A+YDW  +L RA +KG R K LDVAW+ A   G  ++  G+RH   W    GR L  SR
Sbjct: 1131 QNFQLGHSGDATCLAALPDGLLVATGDVSRRPTIIVWKPDTGEAVKTLSGFHRRAITALSFSRDGRHLASLGCDDDHSLAIYDWENSLLRATAKGGRRKALDVAWNSA---GTRLVTCGLRHVSFWNFAGGRNLLHSR 1265          
BLAST of mRNA_M-pyrifera_M_contig109782.2040.1 vs. uniprot
Match: UPI001E1D42AF (LOW QUALITY PROTEIN: echinoderm microtubule-associated protein-like 6 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D42AF)

HSP 1 Score: 124 bits (312), Expect = 3.030e-30
Identity = 59/137 (43.07%), Postives = 84/137 (61.31%), Query Frame = 1
Query:    4 QVYNQEHTADIVCLAVHPSGRFVATGQLGKRPTVVVWDADTGATLSTLDGFHARAVTHVAFHAHSDLLFTVGLDDNHSVAVYDWRRALHRANSKGDRGKVLDVAWSPAKSEGAPVLQVGVRHARLWTVDGRALKSSR 414
            Q +  EHT DI+CL++HP    +ATGQ+G+ P+V VWDA+T  ++S L G H R V  V F      L +VGLDDNHS+ V+DWR+    A ++G + K+  V W+P  +    ++ VGV+H + WT  G    SSR
Sbjct:  717 QRFYLEHTDDILCLSIHPLKDLIATGQVGRDPSVHVWDAETLKSVSVLKGHHERGVCAVDFSGDGKKLVSVGLDDNHSIVVWDWRKGEKLATTRGHKDKIFVVKWNPFDAN--KLITVGVKHIKFWTQAGGGFTSSR 851          
BLAST of mRNA_M-pyrifera_M_contig109782.2040.1 vs. uniprot
Match: C1N8S3_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N8S3_MICPC)

HSP 1 Score: 123 bits (309), Expect = 7.500e-30
Identity = 57/130 (43.85%), Postives = 82/130 (63.08%), Query Frame = 1
Query:    4 QVYNQEHTADIVCLAVHPSGRFVATGQLGKRPTVVVWDADTGATLSTLDGFHARAVTHVAFHAHSDLLFTVGLDDNHSVAVYDWRRALHRANSKGDRGKVLDVAWSPAKSEGAPVLQVGVRHARLWTVDG 393
            Q +   HT DIVCLA+HP    +ATGQ+GK PT+ VW++ T   LS + GFH RAVT ++F A    L +VG+DD+HS+AVYDW      ANS+GD  +V +  ++P       ++  GV+H + W ++G
Sbjct:   56 QQFFTTHTDDIVCLAMHPEREIIATGQVGKEPTICVWNSVTCELLSEIKGFHQRAVTSLSFDATGRFLASVGMDDDHSIAVYDWASRRMLANSRGDERRVFNCEYNPYDGR---LVTGGVKHLKFWVMEG 182          
BLAST of mRNA_M-pyrifera_M_contig109782.2040.1 vs. uniprot
Match: A0A7S0GMR8_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GMR8_MICPS)

HSP 1 Score: 123 bits (309), Expect = 7.520e-30
Identity = 57/138 (41.30%), Postives = 83/138 (60.14%), Query Frame = 1
Query:    1 AQVYNQEHTADIVCLAVHPSGRFVATGQLGKRPTVVVWDADTGATLSTLDGFHARAVTHVAFHAHSDLLFTVGLDDNHSVAVYDWRRALHRANSKGDRGKVLDVAWSPAKSEGAPVLQVGVRHARLWTVDGRALKSSR 414
            AQ +   HT D++C+A+HP G  VATGQ G+ P++ VW + T   L+ L GFH R V  ++F      L +VGLDD+HSVAVYDW+     ANSKGD  ++ +V ++P       ++  GV+H + W ++G  L   R
Sbjct:  163 AQQFFTAHTDDVLCMAMHPDGEIVATGQAGRDPSICVWSSTTCELLAELKGFHRRGVVSLSFDGTGRFLSSVGLDDDHSVAVYDWQSKRMLANSKGDANRIFNVEYNPHDGR---IVTGGVKHVKFWVMEGGYLVGRR 297          
BLAST of mRNA_M-pyrifera_M_contig109782.2040.1 vs. uniprot
Match: UPI0003F06F4F (echinoderm microtubule-associated protein-like 6-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F06F4F)

HSP 1 Score: 122 bits (307), Expect = 1.380e-29
Identity = 57/138 (41.30%), Postives = 83/138 (60.14%), Query Frame = 1
Query:    1 AQVYNQEHTADIVCLAVHPSGRFVATGQLGKRPTVVVWDADTGATLSTLDGFHARAVTHVAFHAHSDLLFTVGLDDNHSVAVYDWRRALHRANSKGDRGKVLDVAWSPAKSEGAPVLQVGVRHARLWTVDGRALKSSR 414
            +Q +  EHT DI+CL +HP    VATGQ+G+ PT+ VWD +   TLS L G H R V  V F      L +VGLDDNH++ ++DW++    A ++G + K+  + W+P   +   ++ VGV+H + WTV G  L S R
Sbjct:  455 SQRFYLEHTDDILCLCIHPLKDIVATGQVGRDPTIHVWDVNDLKTLSILKGEHQRGVCAVDFSGDGKKLASVGLDDNHTIVIWDWKKGAKLATTRGHKDKIYVIKWNPHAED--KLVTVGVKHIKFWTVAGGGLTSKR 590          
BLAST of mRNA_M-pyrifera_M_contig109782.2040.1 vs. uniprot
Match: A0A1Y5IE28_OSTTA (Uncharacterized protein n=3 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5IE28_OSTTA)

HSP 1 Score: 122 bits (306), Expect = 1.940e-29
Identity = 60/123 (48.78%), Postives = 74/123 (60.16%), Query Frame = 1
Query:   22 HTADIVCLAVHPSGRFVATGQLGKRPTVVVWDADTGATLSTLDGFHARAVTHVAFHAHSDLLFTVGLDDNHSVAVYDWRRALHRANSKGDRGKVLDVAWSPAKSEGAPVLQVGVRHARLWTVD 390
            H  DI+CLAVHP    VATGQ G+ P V VW   T   L+ L GFH RAVT ++F A    L TVGLDD HS+AVYDW      ANSKGD  ++ D A++P       ++ VG RH + W V+
Sbjct:  192 HGDDILCLAVHPDLDIVATGQAGRDPVVCVWSTRTREVLAELRGFHQRAVTSLSFDATGKFLATVGLDDEHSIAVYDWENKKVLANSKGDTKRIFDCAYNPHDGR---IVTVGERHIKFWIVE 311          
BLAST of mRNA_M-pyrifera_M_contig109782.2040.1 vs. uniprot
Match: K1QFE3_CRAGI (Echinoderm microtubule-associated protein-like 6 n=5 Tax=Crassostrea TaxID=6564 RepID=K1QFE3_CRAGI)

HSP 1 Score: 122 bits (305), Expect = 2.650e-29
Identity = 58/138 (42.03%), Postives = 82/138 (59.42%), Query Frame = 1
Query:    1 AQVYNQEHTADIVCLAVHPSGRFVATGQLGKRPTVVVWDADTGATLSTLDGFHARAVTHVAFHAHSDLLFTVGLDDNHSVAVYDWRRALHRANSKGDRGKVLDVAWSPAKSEGAPVLQVGVRHARLWTVDGRALKSSR 414
            +Q +  EHT DI+CL +HP    VATGQ+G+ P V VWDA+T  T S L G H R V  V F      L +VGLDDNH + V+DWR+    A ++G + K+  + W+P ++    ++ VGV+H + WT  G    S+R
Sbjct:  713 SQKFYTEHTDDILCLCIHPIKDLVATGQVGRDPAVHVWDAETLKTASILKGQHQRGVCAVDFSGDGKKLASVGLDDNHCIVVWDWRKGEKLATTRGHKDKIFVIKWNPFEAN--KLITVGVKHIKFWTQAGGGFTSTR 848          
BLAST of mRNA_M-pyrifera_M_contig109782.2040.1 vs. uniprot
Match: A0A7S1C976_9STRA (Hypothetical protein n=2 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C976_9STRA)

HSP 1 Score: 121 bits (304), Expect = 3.410e-29
Identity = 60/142 (42.25%), Postives = 88/142 (61.97%), Query Frame = 1
Query:    1 AQVYNQEHTADIVCLAVHPSGRFVATGQLGKRPTVVVWD-ADTGATLST---LDGFHARAVTHVAFHAHSDLLFTVGLDDNHSVAVYDWRRALHRANSKGDRGKVLDVAWSPAKSEGAPVLQVGVRHARLWTVDGRALKSSR 414
            +Q +N +HT DI+ +AVHP GRFVATG++G++P +V+WD ADT   +     + G   RAV  +AF      L  VG DD+H+VAVYDWR    +  +KGD+ K L +A+SP    G  V+Q GV+H +     GR +++ +
Sbjct:  333 SQRFNMDHTDDIIAVAVHPEGRFVATGEMGRKPKIVIWDSADTTGVMDAVRIIQGHATRAVIQLAFSPDGRKLAAVGQDDDHTVAVYDWRSRKMKMQAKGDKNKTLALAFSP---NGHSVVQCGVKHVKFHNFKGRNVQTKK 471          
BLAST of mRNA_M-pyrifera_M_contig109782.2040.1 vs. uniprot
Match: A4S9K3_OSTLU (HELP domain-containing protein (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S9K3_OSTLU)

HSP 1 Score: 121 bits (303), Expect = 3.660e-29
Identity = 55/123 (44.72%), Postives = 74/123 (60.16%), Query Frame = 1
Query:   22 HTADIVCLAVHPSGRFVATGQLGKRPTVVVWDADTGATLSTLDGFHARAVTHVAFHAHSDLLFTVGLDDNHSVAVYDWRRALHRANSKGDRGKVLDVAWSPAKSEGAPVLQVGVRHARLWTVD 390
            H+ DI+CLA+HP G   ATGQ G+ P V VW   T   L+ L GFH RAVT ++F A    L TVGLDD HS+AVYDW      ANSKGD  ++ +  ++P       ++ VG +H + W ++
Sbjct:  104 HSDDILCLAMHPDGEIAATGQAGRDPVVCVWSTKTNRVLAELRGFHQRAVTSLSFDATGKFLVTVGLDDEHSIAVYDWENKKVLANSKGDTKRIFNCKYNPHDGR---IVTVGEQHVKFWVME 223          
BLAST of mRNA_M-pyrifera_M_contig109782.2040.1 vs. uniprot
Match: A0A812T9P4_9DINO (EML6 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812T9P4_9DINO)

HSP 1 Score: 121 bits (303), Expect = 4.610e-29
Identity = 60/131 (45.80%), Postives = 78/131 (59.54%), Query Frame = 1
Query:    4 QVYNQEHTADIVCLAVHPSGRFVATGQLGKRPTVVVWDADTGATLSTLDGFHARAVTHVAFHAHSDLLFTVGLDDNHSVAVYDWRRALHRANSKGDRGKVLDVAWSPAKSEGAPVLQVGVRHARLWTVDGR 396
            Q + Q HT D++ LAVHP+GR+VATG+ G  P ++VWD  T   L  L G H RAVTH+AF      L +VG D +H+V VYDW        S GD+ K LD+A S +   G  + QVG+ H R  T+ GR
Sbjct:  460 QRFFQGHTDDVIALAVHPAGRYVATGEKGPTPKIIVWDTHTLEPLRVLKGAHQRAVTHLAFSRSGTYLASVGADKDHTVVVYDWAAGNWITKSAGDKNKCLDMAISDS---GRLIAQVGINHVRFHTLQGR 587          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109782.2040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR21_ECTSI2.550e-3144.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001E1D42AF3.030e-3043.07LOW QUALITY PROTEIN: echinoderm microtubule-associ... [more]
C1N8S3_MICPC7.500e-3043.85Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A7S0GMR8_MICPS7.520e-3041.30Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
UPI0003F06F4F1.380e-2941.30echinoderm microtubule-associated protein-like 6-l... [more]
A0A1Y5IE28_OSTTA1.940e-2948.78Uncharacterized protein n=3 Tax=Ostreococcus tauri... [more]
K1QFE3_CRAGI2.650e-2942.03Echinoderm microtubule-associated protein-like 6 n... [more]
A0A7S1C976_9STRA3.410e-2942.25Hypothetical protein n=2 Tax=Bicosoecida sp. CB-20... [more]
A4S9K3_OSTLU3.660e-2944.72HELP domain-containing protein (Fragment) n=1 Tax=... [more]
A0A812T9P4_9DINO4.610e-2945.80EML6 protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109782contigM-pyrifera_M_contig109782:154..597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue6.8e-27
Seed eggNOG ortholog2880.D7FR21
KEGG koko:K18595,ko:K18598
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule binding
EggNOG OGsCOG2319@1,KOG2106@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons1
Model size444
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.151538-CDS-M-pyrifera_M_contig109782:153..5971622815608.151538-CDS-M-pyrifera_M_contig109782:153..597Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109782 154..597 -
1692277485.3440099-CDS-M-pyrifera_M_contig109782:153..5971692277485.3440099-CDS-M-pyrifera_M_contig109782:153..597Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109782 154..597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109782.2040.1prot_M-pyrifera_M_contig109782.2040.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109782 154..597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109782.2040.1

>prot_M-pyrifera_M_contig109782.2040.1 ID=prot_M-pyrifera_M_contig109782.2040.1|Name=mRNA_M-pyrifera_M_contig109782.2040.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
AQVYNQEHTADIVCLAVHPSGRFVATGQLGKRPTVVVWDADTGATLSTLD
GFHARAVTHVAFHAHSDLLFTVGLDDNHSVAVYDWRRALHRANSKGDRGK
VLDVAWSPAKSEGAPVLQVGVRHARLWTVDGRALKSSRVSLRGTSAEN
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mRNA from alignment at M-pyrifera_M_contig109782:154..597-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109782.2040.1 ID=mRNA_M-pyrifera_M_contig109782.2040.1|Name=mRNA_M-pyrifera_M_contig109782.2040.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig109782:154..597- (Macrocystis pyrifera P11B4 male)
GCGCAGGTGTACAACCAGGAGCACACGGCCGACATAGTGTGCCTGGCGGT GCACCCGAGCGGCCGGTTCGTGGCGACGGGCCAGCTGGGCAAGCGGCCGA CGGTGGTGGTGTGGGACGCGGACACGGGCGCGACGCTGTCCACGCTGGAC GGATTCCACGCGCGCGCCGTGACGCACGTCGCGTTCCACGCCCACTCCGA CCTCCTCTTCACCGTCGGCCTCGACGACAACCACAGCGTGGCCGTCTACG ACTGGCGGCGCGCGCTGCACCGCGCGAACTCCAAGGGCGACCGCGGCAAG GTGCTGGACGTGGCCTGGTCGCCCGCCAAGAGCGAGGGCGCGCCGGTGCT GCAGGTCGGCGTGCGGCACGCGCGCTTGTGGACGGTGGACGGCCGAGCCC TCAAGTCATCCCGAGTCAGCCTCCGCGGCACCTCCGCCGAAAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109782:154..597-

>mRNA_M-pyrifera_M_contig109782.2040.1 ID=mRNA_M-pyrifera_M_contig109782.2040.1|Name=mRNA_M-pyrifera_M_contig109782.2040.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig109782:154..597- (Macrocystis pyrifera P11B4 male)
GCGCAGGTGTACAACCAGGAGCACACGGCCGACATAGTGTGCCTGGCGGT
GCACCCGAGCGGCCGGTTCGTGGCGACGGGCCAGCTGGGCAAGCGGCCGA
CGGTGGTGGTGTGGGACGCGGACACGGGCGCGACGCTGTCCACGCTGGAC
GGATTCCACGCGCGCGCCGTGACGCACGTCGCGTTCCACGCCCACTCCGA
CCTCCTCTTCACCGTCGGCCTCGACGACAACCACAGCGTGGCCGTCTACG
ACTGGCGGCGCGCGCTGCACCGCGCGAACTCCAAGGGCGACCGCGGCAAG
GTGCTGGACGTGGCCTGGTCGCCCGCCAAGAGCGAGGGCGCGCCGGTGCT
GCAGGTCGGCGTGCGGCACGCGCGCTTGTGGACGGTGGACGGCCGAGCCC
TCAAGTCATCCCGAGTCAGCCTCCGCGGCACCTCCGCCGAAAACGCGCAG
GTGTACAACCAGGAGCACACGGCCGACATAGTGTGCCTGGCGGTGCACCC
GAGCGGCCGGTTCGTGGCGACGGGCCAGCTGGGCAAGCGGCCGACGGTGG
TGGTGTGGGACGCGGACACGGGCGCGACGCTGTCCACGCTGGACGGATTC
CACGCGCGCGCCGTGACGCACGTCGCGTTCCACGCCCACTCCGACCTCCT
CTTCACCGTCGGCCTCGACGACAACCACAGCGTGGCCGTCTACGACTGGC
GGCGCGCGCTGCACCGCGCGAACTCCAAGGGCGACCGCGGCAAGGTGCTG
GACGTGGCCTGGTCGCCCGCCAAGAGCGAGGGCGCGCCGGTGCTGCAGGT
CGGCGTGCGGCACGCGCGCTTGTGGACGGTGGACGGCCGAGCCCTCAAGT
CATCCCGAGTCAGCCTCCGCGGCACCTCCGCCGAAAAC
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