mRNA_M-pyrifera_M_contig109781.2039.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109781.2039.1
Unique NamemRNA_M-pyrifera_M_contig109781.2039.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109781.2039.1 vs. uniprot
Match: A0A812N6Q9_9DINO (CFAP61 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812N6Q9_9DINO)

HSP 1 Score: 109 bits (272), Expect = 8.770e-29
Identity = 51/85 (60.00%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    4 LSVRTARVEDHDDLAPVFAAQSSALNERYGEYFLAELIDAQNDTNQALVAELDGRAVGLLALSSDIDVRVLQESFHLDEYDHLAR 258
            L +R ARVEDHD+LA VF AQS  +   YG++F+AEL++AQND N+ALVAE+DGRAVGL+ L+SD+D+ VL + F LD YD+L +
Sbjct:    5 LGIRIARVEDHDNLAAVFDAQSEVVTAVYGDFFIAELVEAQNDENRALVAEVDGRAVGLMCLTSDVDINVLAQCFQLDPYDNLLK 89
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BLAST of mRNA_M-pyrifera_M_contig109781.2039.1 vs. uniprot
Match: A0A812U9P1_9DINO (CFAP61 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812U9P1_9DINO)

HSP 1 Score: 109 bits (272), Expect = 2.020e-28
Identity = 51/85 (60.00%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    4 LSVRTARVEDHDDLAPVFAAQSSALNERYGEYFLAELIDAQNDTNQALVAELDGRAVGLLALSSDIDVRVLQESFHLDEYDHLAR 258
            L +R ARVEDHD+LA VF AQS  +   YG++F+AEL++AQND N+ALVAE+DGRAVGL+ L+SD+D+ VL + F LD YD+L +
Sbjct:   36 LGIRIARVEDHDNLAAVFDAQSEVVTAVYGDFFIAELVEAQNDENRALVAEVDGRAVGLMCLTSDVDINVLAQCFQLDPYDNLLK 120
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BLAST of mRNA_M-pyrifera_M_contig109781.2039.1 vs. uniprot
Match: A0A7S2HIT3_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2HIT3_9DINO)

HSP 1 Score: 113 bits (282), Expect = 3.430e-27
Identity = 54/85 (63.53%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:    4 LSVRTARVEDHDDLAPVFAAQSSALNERYGEYFLAELIDAQNDTNQALVAELDGRAVGLLALSSDIDVRVLQESFHLDEYDHLAR 258
            L +R ARVEDHD+LA VF AQS  + + YGEYF+AELI+AQND N+ALVAE+DGRAVGL+ L+SD+D  VL + F LD+YD+L +
Sbjct:  225 LCIRMARVEDHDNLAAVFDAQSEVVTDIYGEYFIAELIEAQNDENKALVAEVDGRAVGLMCLTSDVDANVLSQCFKLDQYDNLLK 309
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BLAST of mRNA_M-pyrifera_M_contig109781.2039.1 vs. uniprot
Match: A0A7S3RB93_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RB93_9SPIT)

HSP 1 Score: 111 bits (277), Expect = 1.210e-26
Identity = 53/83 (63.86%), Postives = 68/83 (81.93%), Query Frame = 1 
Query:    4 LSVRTARVEDHDDLAPVFAAQSSALNERYGEYFLAELIDAQNDTNQALVAELDGRAVGLLALSSDIDVRVLQESFHLDEYDHL 252
            L +R ARVEDHDDL P+F  QS  L ERYGEYF+A++I++Q++ N+ALVAE++GRAVGLLALSS+IDV  LQ SF L+ +D L
Sbjct:  190 LHIRKARVEDHDDLVPIFEMQSEVLTERYGEYFIAQMIESQDEENKALVAEVEGRAVGLLALSSEIDVNTLQASFDLEAFDGL 272
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BLAST of mRNA_M-pyrifera_M_contig109781.2039.1 vs. uniprot
Match: A0A812PED0_9DINO (CFAP61 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812PED0_9DINO)

HSP 1 Score: 107 bits (268), Expect = 1.470e-26
Identity = 50/85 (58.82%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    4 LSVRTARVEDHDDLAPVFAAQSSALNERYGEYFLAELIDAQNDTNQALVAELDGRAVGLLALSSDIDVRVLQESFHLDEYDHLAR 258
            L +R ARVEDHD+LA VF AQS  +   YG++F+AEL++AQN+ N+ALVAE+DGRAVGL+ L+SD+D+ VL + F LD YD+L +
Sbjct:   36 LGIRIARVEDHDNLAAVFDAQSEVVTAVYGDFFIAELVEAQNEENRALVAEVDGRAVGLMCLTSDVDINVLAQCFQLDPYDNLLK 120
[Close]
BLAST of mRNA_M-pyrifera_M_contig109781.2039.1 vs. uniprot
Match: A0A7S4C2D8_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C2D8_CHRCT)

HSP 1 Score: 107 bits (267), Expect = 1.980e-26
Identity = 51/89 (57.30%), Postives = 70/89 (78.65%), Query Frame = 1 
Query:    1 DLSVRTARVEDHDDLAPVFAAQSSALNERYGEYFLAELIDAQNDTNQALVAELDGRAVGLLALSSDIDVRVLQESFHLDEYDHLARLSD 267
            +L VR ARVEDHDDL PVF +QS  L+ERYGE+F+AELI +Q++ N+A+V E+DG AVGL+  SS+IDV +LQ+ F L+ Y++L +  D
Sbjct:  190 ELLVREARVEDHDDLVPVFDSQSEVLSERYGEFFIAELIASQDEVNRAVVGEVDGHAVGLMGCSSEIDVSILQDCFDLEPYENLMKPDD 278
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BLAST of mRNA_M-pyrifera_M_contig109781.2039.1 vs. uniprot
Match: A0A7S1CJA0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CJA0_9STRA)

HSP 1 Score: 107 bits (266), Expect = 3.000e-26
Identity = 51/87 (58.62%), Postives = 71/87 (81.61%), Query Frame = 1 
Query:    4 LSVRTARVEDHDDLAPVFAAQSSALNERYGEYFLAELIDAQNDTNQALVAELDGRAVGLLALSSDIDVRVLQESFHLDEYDHLARLS 264
            L++R ARVEDHDDL P+F +QS  L E YGE+FLAELI+AQN++ +ALVAE+DGRAVGL++L+ DI + VLQ+ F L  Y++L +++
Sbjct:   92 LTIRPARVEDHDDLVPIFNSQSEVLTELYGEFFLAELIEAQNESTRALVAEVDGRAVGLMSLTRDIKLGVLQQCFDLGPYNNLMQVT 178
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BLAST of mRNA_M-pyrifera_M_contig109781.2039.1 vs. uniprot
Match: A0A0M0JUL8_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JUL8_9EUKA)

HSP 1 Score: 110 bits (274), Expect = 4.100e-26
Identity = 55/90 (61.11%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:    1 DLSVRTARVEDHDDLAPVFAAQSSALNERYGEYFLAELIDAQNDTNQALVAELDGRAVGLLALSSDIDVRVLQESFHLDEYDHLARLSDS 270
            DL +R ARVEDHDDL PVF AQS  L ERYGE+F+AELI+ Q+  N ALVAE+DG A+GLLALSS+IDV++L+ +F L+ +  L R  +S
Sbjct:  176 DLLIRPARVEDHDDLVPVFNAQSEVLTERYGEFFIAELIERQDANNVALVAEVDGHAIGLLALSSEIDVKLLKTTFDLEPFAELEREDES 265
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BLAST of mRNA_M-pyrifera_M_contig109781.2039.1 vs. uniprot
Match: A0A813LUH2_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LUH2_POLGL)

HSP 1 Score: 109 bits (272), Expect = 7.570e-26
Identity = 51/85 (60.00%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:    4 LSVRTARVEDHDDLAPVFAAQSSALNERYGEYFLAELIDAQNDTNQALVAELDGRAVGLLALSSDIDVRVLQESFHLDEYDHLAR 258
            L +R ARVEDHD+LA VF AQS  + + YG++F+AELI+AQN+ N+ALVAE+DGRAVGL+ L+SD+D+ VL + F LD YD+L +
Sbjct:  221 LGIRMARVEDHDNLAAVFDAQSEVVTQVYGDFFIAELIEAQNEENRALVAEVDGRAVGLMCLTSDVDINVLAQCFQLDPYDNLLK 305
[Close]
BLAST of mRNA_M-pyrifera_M_contig109781.2039.1 vs. uniprot
Match: A0A812IWI1_SYMPI (CFAP61 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812IWI1_SYMPI)

HSP 1 Score: 107 bits (268), Expect = 2.700e-25
Identity = 50/85 (58.82%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    4 LSVRTARVEDHDDLAPVFAAQSSALNERYGEYFLAELIDAQNDTNQALVAELDGRAVGLLALSSDIDVRVLQESFHLDEYDHLAR 258
            L +R ARVEDHD+LA VF AQS  +   YG++F+AEL++AQN+ N+ALVAE+DGRAVGL+ L+SD+D+ VL + F LD YD+L +
Sbjct:  149 LGIRIARVEDHDNLAAVFDAQSEVVTAVYGDFFIAELVEAQNEENRALVAEVDGRAVGLMCLTSDVDINVLAQCFQLDPYDNLLK 233
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109781.2039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812N6Q9_9DINO8.770e-2960.00CFAP61 protein n=1 Tax=Symbiodinium sp. CCMP2456 T... [more]
A0A812U9P1_9DINO2.020e-2860.00CFAP61 protein n=1 Tax=Symbiodinium sp. CCMP2592 T... [more]
A0A7S2HIT3_9DINO3.430e-2763.53Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
A0A7S3RB93_9SPIT1.210e-2663.86Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A812PED0_9DINO1.470e-2658.82CFAP61 protein n=1 Tax=Symbiodinium natans TaxID=8... [more]
A0A7S4C2D8_CHRCT1.980e-2657.30Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
A0A7S1CJA0_9STRA3.000e-2658.62Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A0M0JUL8_9EUKA4.100e-2661.11Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A813LUH2_POLGL7.570e-2660.00Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A812IWI1_SYMPI2.700e-2558.82CFAP61 protein n=1 Tax=Symbiodinium pilosum TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109781contigM-pyrifera_M_contig109781:332..601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.8
Seed ortholog evalue2.2e-20
Seed eggNOG ortholog227086.JGI_V11_73190
Preferred nameCFAP61
Hectar predicted targeting categoryother localisation
GOsGO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0030030,GO:0031514,GO:0032838,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120036,GO:0120038
EggNOG free text desc.cilium movement
EggNOG OGs2CMWM@1,2QSEC@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.1131284-CDS-M-pyrifera_M_contig109781:331..6011622815608.1131284-CDS-M-pyrifera_M_contig109781:331..601Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109781 332..601 -
1692277485.3282995-CDS-M-pyrifera_M_contig109781:331..6011692277485.3282995-CDS-M-pyrifera_M_contig109781:331..601Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109781 332..601 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109781.2039.1prot_M-pyrifera_M_contig109781.2039.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109781 332..601 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109781.2039.1

>prot_M-pyrifera_M_contig109781.2039.1 ID=prot_M-pyrifera_M_contig109781.2039.1|Name=mRNA_M-pyrifera_M_contig109781.2039.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=90bp
DLSVRTARVEDHDDLAPVFAAQSSALNERYGEYFLAELIDAQNDTNQALV
AELDGRAVGLLALSSDIDVRVLQESFHLDEYDHLARLSDS
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mRNA from alignment at M-pyrifera_M_contig109781:332..601-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109781.2039.1 ID=mRNA_M-pyrifera_M_contig109781.2039.1|Name=mRNA_M-pyrifera_M_contig109781.2039.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig109781:332..601- (Macrocystis pyrifera P11B4 male)
GACCTCTCCGTGCGCACCGCGCGCGTGGAGGACCACGACGACCTCGCGCC
GGTGTTCGCCGCGCAGAGCTCCGCGCTGAACGAGCGCTACGGCGAGTACT
TCCTCGCCGAGCTCATCGACGCGCAGAACGACACCAACCAGGCGCTCGTC
GCCGAGCTGGACGGCCGCGCCGTCGGCCTCCTCGCCCTCTCCTCCGACAT
CGACGTGCGCGTGCTGCAAGAGTCGTTCCACCTGGACGAGTACGACCACC
TCGCCCGGCTATCCGACTCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109781:332..601-

>mRNA_M-pyrifera_M_contig109781.2039.1 ID=mRNA_M-pyrifera_M_contig109781.2039.1|Name=mRNA_M-pyrifera_M_contig109781.2039.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=540bp|location=Sequence derived from alignment at M-pyrifera_M_contig109781:332..601- (Macrocystis pyrifera P11B4 male)
GACCTCTCCGTGCGCACCGCGCGCGTGGAGGACCACGACGACCTCGCGCC
GGTGTTCGCCGCGCAGAGCTCCGCGCTGAACGAGCGCTACGGCGAGTACT
TCCTCGCCGAGCTCATCGACGCGCAGAACGACACCAACCAGGCGCTCGTC
GCCGAGCTGGACGGCCGCGCCGTCGGCCTCCTCGCCCTCTCCTCCGACAT
CGACGTGCGCGTGCTGCAAGAGTCGTTCCACCTGGACGAGTACGACCACC
TCGCCCGGCTATCCGACTCGGACCTCTCCGTGCGCACCGCGCGCGTGGAG
GACCACGACGACCTCGCGCCGGTGTTCGCCGCGCAGAGCTCCGCGCTGAA
CGAGCGCTACGGCGAGTACTTCCTCGCCGAGCTCATCGACGCGCAGAACG
ACACCAACCAGGCGCTCGTCGCCGAGCTGGACGGCCGCGCCGTCGGCCTC
CTCGCCCTCTCCTCCGACATCGACGTGCGCGTGCTGCAAGAGTCGTTCCA
CCTGGACGAGTACGACCACCTCGCCCGGCTATCCGACTCG
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