mRNA_M-pyrifera_M_contig87743.20387.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87743.20387.1
Unique NamemRNA_M-pyrifera_M_contig87743.20387.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig87743.20387.1 vs. uniprot
Match: A0A518INE8_9BACT (Uncharacterized protein n=2 Tax=Rosistilla oblonga TaxID=2527990 RepID=A0A518INE8_9BACT)

HSP 1 Score: 206 bits (523), Expect = 8.820e-66
Identity = 102/120 (85.00%), Postives = 111/120 (92.50%), Query Frame = 1 
Query:    1 MFLMLAVLMTVANDAPEIQNGRFEQSAKTSGLPSSWSFTSIPSKQHLVTYRTKMVGEGEQASNALAIQVAGDHPDEGVAYNAYQDLKGLTAGKTYRVSAKMTANGLSTAPMIVLQCLNSN 360
            M LMLAVLMTVANDAP+I NGRFEQS KTSGLPSSW FTS+PSK HLVTYRTK+VGEG+QASNALAI VAGDHPDE VAYNA+Q+LKGL  GKTYRVSAKMTA+GLSTAPMIVL+CLN+N
Sbjct:    1 MILMLAVLMTVANDAPQISNGRFEQSVKTSGLPSSWLFTSLPSKHHLVTYRTKVVGEGDQASNALAIHVAGDHPDESVAYNAHQELKGLAVGKTYRVSAKMTASGLSTAPMIVLECLNAN 120
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BLAST of mRNA_M-pyrifera_M_contig87743.20387.1 vs. uniprot
Match: A0A518AEU3_9PLAN (Uncharacterized protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518AEU3_9PLAN)

HSP 1 Score: 124 bits (310), Expect = 1.960e-33
Identity = 61/121 (50.41%), Postives = 85/121 (70.25%), Query Frame = 1 
Query:    1 MFLMLAVLMTVAND-APEIQNGRFEQSAKTSGLPSSWSFTSIPSKQHLVTYRTKMVGEGEQASNALAIQVAGDHPDEGVAYNAYQDLKGLTAGKTYRVSAKMTANGLSTAPMIVLQCLNSN 360
            M +ML +L++ A   +P + N  FEQ    +GLP+ W+FTS+P +QHLV YRT  V   +  + AL+I VA DHP+  VAYN +QDLKGLT GK+YRVSA++   GL T PMIV+QC++++
Sbjct:    1 MEIMLTMLLSFATAVSPTVVNADFEQKDARTGLPTGWAFTSLPDRQHLVNYRTTQVAAEQGQTRALSITVASDHPEHKVAYNIHQDLKGLTPGKSYRVSARVCTRGLKTLPMIVVQCIDAS 121
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BLAST of mRNA_M-pyrifera_M_contig87743.20387.1 vs. uniprot
Match: A0A2E7KLC3_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KLC3_9PLAN)

HSP 1 Score: 122 bits (306), Expect = 7.870e-33
Identity = 61/121 (50.41%), Postives = 86/121 (71.07%), Query Frame = 1 
Query:    1 MFLMLAVLMTVANDA-PEIQNGRFEQSAKTSGLPSSWSFTSIPSKQHLVTYRTKMVGEGEQASNALAIQVAGDHPDEGVAYNAYQDLKGLTAGKTYRVSAKMTANGLSTAPMIVLQCLNSN 360
            M +ML +L+ VA  A P + N  FEQ    +GLP+ WS+TS+P +QHLV Y+T  V   ++  +AL+I VA DHP++ VAYN +QDL+GLT GK YRVSA++   GL T PMIV+QC++++
Sbjct:    1 MEIMLTMLLGVATAAGPTVINADFEQKDVRTGLPTGWSYTSLPGRQHLVNYQTTQVTAAKKQGSALSITVASDHPEQIVAYNIHQDLQGLTPGKAYRVSARVCTKGLKTMPMIVVQCIDAS 121
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BLAST of mRNA_M-pyrifera_M_contig87743.20387.1 vs. uniprot
Match: A0A517WQ96_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WQ96_9PLAN)

HSP 1 Score: 102 bits (255), Expect = 4.030e-25
Identity = 52/120 (43.33%), Postives = 78/120 (65.00%), Query Frame = 1 
Query:    1 MFLMLAVLMTV--ANDAPEIQNGRFEQSAKTSGLPSSWSFTSIPSKQHLVTYRTKMVGEGEQASNALAIQVAGDHPDEGVAYNAYQDLKGLTAGKTYRVSAKMTANGLSTAPMIVLQCLN 354
            M L+LA+L +   A     + N  FE  ++ + LP  W +TS+P +  LV Y+   V  G++ S ALAI V+ DHPD+ VAYNA+QD+ G+ +GKTY+VSA++   GL T PM+ +QC++
Sbjct:    1 MKLLLALLCSTVAAASTTNVNNSGFEDISERTRLPVGWGYTSLPGQSDLVEYKVTTV-PGDENSKALAITVSSDHPDQRVAYNAFQDVPGIESGKTYKVSARVQTRGLETMPMVAVQCID 119
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87743.20387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A518INE8_9BACT8.820e-6685.00Uncharacterized protein n=2 Tax=Rosistilla oblonga... [more]
A0A518AEU3_9PLAN1.960e-3350.41Uncharacterized protein n=3 Tax=Gimesia panareensi... [more]
A0A2E7KLC3_9PLAN7.870e-3350.41Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A517WQ96_9PLAN4.030e-2543.33Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87743contigM-pyrifera_M_contig87743:2..361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size360
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816786.9818242-CDS-M-pyrifera_M_contig87743:1..3611622816786.9818242-CDS-M-pyrifera_M_contig87743:1..361Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87743 2..361 -
1692278178.2417395-CDS-M-pyrifera_M_contig87743:1..3611692278178.2417395-CDS-M-pyrifera_M_contig87743:1..361Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87743 2..361 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87743.20387.1prot_M-pyrifera_M_contig87743.20387.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87743 2..361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87743.20387.1

>prot_M-pyrifera_M_contig87743.20387.1 ID=prot_M-pyrifera_M_contig87743.20387.1|Name=mRNA_M-pyrifera_M_contig87743.20387.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
MFLMLAVLMTVANDAPEIQNGRFEQSAKTSGLPSSWSFTSIPSKQHLVTY
RTKMVGEGEQASNALAIQVAGDHPDEGVAYNAYQDLKGLTAGKTYRVSAK
MTANGLSTAPMIVLQCLNSN
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mRNA from alignment at M-pyrifera_M_contig87743:2..361-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87743.20387.1 ID=mRNA_M-pyrifera_M_contig87743.20387.1|Name=mRNA_M-pyrifera_M_contig87743.20387.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig87743:2..361- (Macrocystis pyrifera P11B4 male)
ATGTTTTTAATGCTTGCTGTTCTAATGACCGTCGCAAACGATGCTCCGGA
AATCCAAAATGGCCGATTTGAACAGTCGGCTAAGACTTCAGGACTTCCGT
CGTCCTGGTCGTTCACTTCAATCCCATCGAAACAGCATCTTGTAACATAC
CGAACCAAGATGGTTGGCGAAGGCGAGCAGGCATCTAATGCTCTTGCGAT
TCAAGTCGCGGGCGATCATCCCGACGAGGGGGTCGCTTACAATGCATATC
AAGATTTGAAGGGGCTGACTGCTGGGAAAACCTATCGCGTGTCTGCTAAG
ATGACAGCGAACGGTCTCTCCACTGCGCCGATGATTGTTCTGCAGTGCCT
GAACTCAAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87743:2..361-

>mRNA_M-pyrifera_M_contig87743.20387.1 ID=mRNA_M-pyrifera_M_contig87743.20387.1|Name=mRNA_M-pyrifera_M_contig87743.20387.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig87743:2..361- (Macrocystis pyrifera P11B4 male)
ATGTTTTTAATGCTTGCTGTTCTAATGACCGTCGCAAACGATGCTCCGGA
AATCCAAAATGGCCGATTTGAACAGTCGGCTAAGACTTCAGGACTTCCGT
CGTCCTGGTCGTTCACTTCAATCCCATCGAAACAGCATCTTGTAACATAC
CGAACCAAGATGGTTGGCGAAGGCGAGCAGGCATCTAATGCTCTTGCGAT
TCAAGTCGCGGGCGATCATCCCGACGAGGGGGTCGCTTACAATGCATATC
AAGATTTGAAGGGGCTGACTGCTGGGAAAACCTATCGCGTGTCTGCTAAG
ATGACAGCGAACGGTCTCTCCACTGCGCCGATGATTGTTCTGCAGTGCCT
GAACTCAAACATGTTTTTAATGCTTGCTGTTCTAATGACCGTCGCAAACG
ATGCTCCGGAAATCCAAAATGGCCGATTTGAACAGTCGGCTAAGACTTCA
GGACTTCCGTCGTCCTGGTCGTTCACTTCAATCCCATCGAAACAGCATCT
TGTAACATACCGAACCAAGATGGTTGGCGAAGGCGAGCAGGCATCTAATG
CTCTTGCGATTCAAGTCGCGGGCGATCATCCCGACGAGGGGGTCGCTTAC
AATGCATATCAAGATTTGAAGGGGCTGACTGCTGGGAAAACCTATCGCGT
GTCTGCTAAGATGACAGCGAACGGTCTCTCCACTGCGCCGATGATTGTTC
TGCAGTGCCTGAACTCAAAC
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