mRNA_M-pyrifera_M_contig87725.20380.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87725.20380.1
Unique NamemRNA_M-pyrifera_M_contig87725.20380.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig87725.20380.1 vs. uniprot
Match: A0A7S4MKM0_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MKM0_9EUKA)

HSP 1 Score: 117 bits (294), Expect = 1.250e-29
Identity = 68/146 (46.58%), Postives = 92/146 (63.01%), Query Frame = 1 
Query:   31 KQRQIAGLMERLYLVRHDPARDMQEALEEVKRLLAELNRRNEELAQLTEQGLQKFSASLALDELGIARRVRTRSFRKPSRVDFAEGSQG-----------------GLARTGSTRSLEDKPAEEKWHGLFRMFREWKFQKQVQEAQ 417
            K+ +I  + ERLY+VR+D + +  E L + K LLAELNR NEELAQ+ E+GLQKF  SL LDE+GI+RR++T SFR PS+V F   S                   G  RT ST + E +P  EKW  L++M++EWK+QK + +AQ
Sbjct:   84 KEDEIESITERLYVVRYDKSLNGDEVLMQCKNLLAELNRLNEELAQIREKGLQKFVKSLELDEIGISRRMKTSSFRTPSKVIFEGSSDAAPEEKFSLSQYASTGAYGFMRTKSTGTFEQQPPNEKWKSLYKMYKEWKYQKGLADAQ 229
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87725.20380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4MKM0_9EUKA1.250e-2946.58Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87725contigM-pyrifera_M_contig87725:3..419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size417
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816786.7340546-CDS-M-pyrifera_M_contig87725:2..4191622816786.7340546-CDS-M-pyrifera_M_contig87725:2..419Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87725 3..419 -
1692278178.1402304-CDS-M-pyrifera_M_contig87725:2..4191692278178.1402304-CDS-M-pyrifera_M_contig87725:2..419Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87725 3..419 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87725.20380.1prot_M-pyrifera_M_contig87725.20380.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87725 3..419 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87725.20380.1

>prot_M-pyrifera_M_contig87725.20380.1 ID=prot_M-pyrifera_M_contig87725.20380.1|Name=mRNA_M-pyrifera_M_contig87725.20380.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
RQKLYARQQQKQRQIAGLMERLYLVRHDPARDMQEALEEVKRLLAELNRR
NEELAQLTEQGLQKFSASLALDELGIARRVRTRSFRKPSRVDFAEGSQGG
LARTGSTRSLEDKPAEEKWHGLFRMFREWKFQKQVQEAQ
back to top

mRNA from alignment at M-pyrifera_M_contig87725:3..419-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87725.20380.1 ID=mRNA_M-pyrifera_M_contig87725.20380.1|Name=mRNA_M-pyrifera_M_contig87725.20380.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig87725:3..419- (Macrocystis pyrifera P11B4 male)
CGGCAGAAGCTCTACGCGCGGCAGCAGCAGAAGCAGCGGCAGATCGCGGG
CCTGATGGAGCGGCTCTACCTGGTGCGGCACGACCCCGCGCGCGACATGC
AGGAGGCGCTCGAGGAGGTGAAGCGGCTGCTGGCAGAGCTCAACCGCCGC
AACGAGGAGCTGGCGCAGCTCACCGAGCAGGGCCTGCAGAAGTTCTCTGC
CTCGCTGGCCCTCGACGAGCTGGGCATCGCGCGCCGCGTCCGCACGCGCT
CCTTCCGCAAGCCCAGCAGGGTCGACTTTGCAGAGGGCAGCCAGGGCGGC
CTCGCCCGCACCGGCAGCACCCGCAGCCTCGAGGACAAGCCCGCCGAGGA
GAAGTGGCACGGCCTCTTCCGCATGTTCCGCGAGTGGAAGTTCCAGAAGC
AGGTCCAGGAGGCCCAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig87725:3..419-

>mRNA_M-pyrifera_M_contig87725.20380.1 ID=mRNA_M-pyrifera_M_contig87725.20380.1|Name=mRNA_M-pyrifera_M_contig87725.20380.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig87725:3..419- (Macrocystis pyrifera P11B4 male)
CGGCAGAAGCTCTACGCGCGGCAGCAGCAGAAGCAGCGGCAGATCGCGGG
CCTGATGGAGCGGCTCTACCTGGTGCGGCACGACCCCGCGCGCGACATGC
AGGAGGCGCTCGAGGAGGTGAAGCGGCTGCTGGCAGAGCTCAACCGCCGC
AACGAGGAGCTGGCGCAGCTCACCGAGCAGGGCCTGCAGAAGTTCTCTGC
CTCGCTGGCCCTCGACGAGCTGGGCATCGCGCGCCGCGTCCGCACGCGCT
CCTTCCGCAAGCCCAGCAGGGTCGACTTTGCAGAGGGCAGCCAGGGCGGC
CTCGCCCGCACCGGCAGCACCCGCAGCCTCGAGGACAAGCCCGCCGAGGA
GAAGTGGCACGGCCTCTTCCGCATGTTCCGCGAGTGGAAGTTCCAGAAGC
AGGTCCAGGAGGCCCAGCGGCAGAAGCTCTACGCGCGGCAGCAGCAGAAG
CAGCGGCAGATCGCGGGCCTGATGGAGCGGCTCTACCTGGTGCGGCACGA
CCCCGCGCGCGACATGCAGGAGGCGCTCGAGGAGGTGAAGCGGCTGCTGG
CAGAGCTCAACCGCCGCAACGAGGAGCTGGCGCAGCTCACCGAGCAGGGC
CTGCAGAAGTTCTCTGCCTCGCTGGCCCTCGACGAGCTGGGCATCGCGCG
CCGCGTCCGCACGCGCTCCTTCCGCAAGCCCAGCAGGGTCGACTTTGCAG
AGGGCAGCCAGGGCGGCCTCGCCCGCACCGGCAGCACCCGCAGCCTCGAG
GACAAGCCCGCCGAGGAGAAGTGGCACGGCCTCTTCCGCATGTTCCGCGA
GTGGAAGTTCCAGAAGCAGGTCCAGGAGGCCCAG
back to top