mRNA_M-pyrifera_M_contig877.20374.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig877.20374.1
Unique NamemRNA_M-pyrifera_M_contig877.20374.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig877.20374.1 vs. uniprot
Match: D8LRI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRI4_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 1.070e-14
Identity = 45/59 (76.27%), Postives = 49/59 (83.05%), Query Frame = 3 
Query:    9 NTAGAYVREIASNGAEAIEPALPSVGR-LGVSYDEGGEGLGDP---AQERAFEGEQVQE 173
            N  GAY+REIA + +E  EPALPS+GR LGVSYDEGGEGLGDP   AQERAFEGEQVQE
Sbjct: 3986 NFPGAYMREIAPSVSEVSEPALPSLGRQLGVSYDEGGEGLGDPSQVAQERAFEGEQVQE 4044
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig877.20374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRI4_ECTSI1.070e-1476.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig877contigM-pyrifera_M_contig877:30494..31306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size194
Cds size192
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816786.0365703-CDS-M-pyrifera_M_contig877:30493..306331622816786.0365703-CDS-M-pyrifera_M_contig877:30493..30633Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig877 30494..30633 +
1692278177.6328018-CDS-M-pyrifera_M_contig877:30493..306331692278177.6328018-CDS-M-pyrifera_M_contig877:30493..30633Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig877 30494..30633 +
1622816786.0477617-CDS-M-pyrifera_M_contig877:31254..313061622816786.0477617-CDS-M-pyrifera_M_contig877:31254..31306Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig877 31255..31306 +
1692278177.649895-CDS-M-pyrifera_M_contig877:31254..313061692278177.649895-CDS-M-pyrifera_M_contig877:31254..31306Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig877 31255..31306 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig877.20374.1prot_M-pyrifera_M_contig877.20374.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig877 30494..31306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig877.20374.1

>prot_M-pyrifera_M_contig877.20374.1 ID=prot_M-pyrifera_M_contig877.20374.1|Name=mRNA_M-pyrifera_M_contig877.20374.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp
MIKIPQERTSVRSLQTARRRSNPRCHLLDGSGCRMTREGRVSVTPHRNER
LRGSKCRSRNKSKS
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mRNA from alignment at M-pyrifera_M_contig877:30494..31306+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig877.20374.1 ID=mRNA_M-pyrifera_M_contig877.20374.1|Name=mRNA_M-pyrifera_M_contig877.20374.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=813bp|location=Sequence derived from alignment at M-pyrifera_M_contig877:30494..31306+ (Macrocystis pyrifera P11B4 male)
ATGATAAAAATACCGCAGGAGCGTACGTCCGTGAGATCGCTTCAAACGGC
GCGGAGGCGATCGAACCCGCGTTGCCATCTGTTGGACGGCTCGGGGTGTC
GTATGACGAGGGAGGGGAGGGTCTCGGTGACCCCGCACAGGTGGCGCAGG
CAAGTGCATGGCAGACTGGGCTTCTTTCCGTAGCGACTAAAGCGAAATTG
CCAAAGCGGTACTGCTGTGGTACCGTGCTAGACATATGTGGTTGGTTCTA
GCGTAGAACTGAACTGCTTACGTCGCTTAGAGGAGGGCCCCTTGCGAGCC
TGTTTGCTATCGCCGATGAAAACTGCGGGTTTGTACGACTTGCCGCAGGA
ACCGAAAATGGCATTGGGCGTCTGATACTTACGCTCGATACCGTTCTGCT
TAGCAGGACTAAGGAGAAATACAACAGTCTTTTTGTGCGACAATCGGTGT
ATCACAAAGTTCGGCATGGATGTGATTACCTCAGTTCTACCTTAAAGTTG
GACAGCAGCTACGAGTACTGGACAGGCCTTGTTCTCTTGCCATGCTTGTC
GACAGAGGCAAGCCTTAGCTGCAGCCCCAGGAAGCGCCATGCGTCCTGCA
ATTGAAACGGATTGAGCACAAAACGCCCGCAATGGTTGAGTTACAGGGTT
CGGTCTAATCACGATTCGCAATGAGAGCAGCGTGTTCGATCCACAGGGTT
CACCGTCGTTGAAAACTGGCGCTTTGCCTGTTCTGTGCTTGATGTGCCAC
ACCGTCAACAGGAACGAGCGTTTGAGGGGGAGCAAGTGCAGGAGCAGGAA
CAAGAGCAAGAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig877:30494..31306+

>mRNA_M-pyrifera_M_contig877.20374.1 ID=mRNA_M-pyrifera_M_contig877.20374.1|Name=mRNA_M-pyrifera_M_contig877.20374.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig877:30494..31306+ (Macrocystis pyrifera P11B4 male)
ATGATAAAAATACCGCAGGAGCGTACGTCCGTGAGATCGCTTCAAACGGC
GCGGAGGCGATCGAACCCGCGTTGCCATCTGTTGGACGGCTCGGGGTGTC
GTATGACGAGGGAGGGGAGGGTCTCGGTGACCCCGCACAGATGATAAAAA
TACCGCAGGAGCGTACGTCCGTGAGATCGCTTCAAACGGCGCGGAGGCGA
TCGAACCCGCGTTGCCATCTGTTGGACGGCTCGGGGTGTCGTATGACGAG
GGAGGGGAGGGTCTCGGTGACCCCGCACAGGAACGAGCGTTTGAGGGGGA
GCAAGTGCAGGAGCAGGAACAAGAGCAAGAGCGAACGAGCGTTTGAGGGG
GAGCAAGTGCAGGAGCAGGAACAAGAGCAAGAGC
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