mRNA_M-pyrifera_M_contig87674.20371.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87674.20371.1
Unique NamemRNA_M-pyrifera_M_contig87674.20371.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87674.20371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87674contigM-pyrifera_M_contig87674:94..465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816785.952001-CDS-M-pyrifera_M_contig87674:93..2681622816785.952001-CDS-M-pyrifera_M_contig87674:93..268Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87674 94..268 +
1692278177.5855381-CDS-M-pyrifera_M_contig87674:93..2681692278177.5855381-CDS-M-pyrifera_M_contig87674:93..268Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87674 94..268 +
1622816785.9666703-CDS-M-pyrifera_M_contig87674:346..4651622816785.9666703-CDS-M-pyrifera_M_contig87674:346..465Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87674 347..465 +
1692278177.6030002-CDS-M-pyrifera_M_contig87674:346..4651692278177.6030002-CDS-M-pyrifera_M_contig87674:346..465Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87674 347..465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87674.20371.1prot_M-pyrifera_M_contig87674.20371.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87674 94..465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87674.20371.1

>prot_M-pyrifera_M_contig87674.20371.1 ID=prot_M-pyrifera_M_contig87674.20371.1|Name=mRNA_M-pyrifera_M_contig87674.20371.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
FWLTTGCFPQTLVFQLAGTSERPVEIKRLGLRATGVAEASISVSTSASMM
AWDDIGKIAFDDADGIIESSVGFAPCEARYVRVTITHGHEDFASIHSI
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mRNA from alignment at M-pyrifera_M_contig87674:94..465+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87674.20371.1 ID=mRNA_M-pyrifera_M_contig87674.20371.1|Name=mRNA_M-pyrifera_M_contig87674.20371.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig87674:94..465+ (Macrocystis pyrifera P11B4 male)
TTCTGGCTTACTACTGGATGCTTCCCACAAACACTAGTCTTCCAGCTTGC
TGGAACCTCGGAACGGCCAGTTGAGATAAAACGGCTGGGATTGCGGGCGA
CTGGTGTAGCAGAAGCTTCCATTTCTGTGAGTACCTCCGCCTCCATGATG
GCCTGGGACGATATTGGGAAGATTGGTACGTGATGGATTACATGAAAGGG
AGAAAAAGAGGTTGGGAAGGGTGGATTGGTGGGCTTTGTGTGTTTTCCTG
CAGCTTTTGATGACGCAGATGGCATTATTGAGTCTTCTGTAGGATTCGCT
CCATGTGAAGCGAGATATGTGCGTGTGACCATTACGCATGGCCACGAAGA
CTTTGCGTCCATCCATTCCATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87674:94..465+

>mRNA_M-pyrifera_M_contig87674.20371.1 ID=mRNA_M-pyrifera_M_contig87674.20371.1|Name=mRNA_M-pyrifera_M_contig87674.20371.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig87674:94..465+ (Macrocystis pyrifera P11B4 male)
TTCTGGCTTACTACTGGATGCTTCCCACAAACACTAGTCTTCCAGCTTGC
TGGAACCTCGGAACGGCCAGTTGAGATAAAACGGCTGGGATTGCGGGCGA
CTGGTGTAGCAGAAGCTTCCATTTCTGTGAGTACCTCCGCCTCCATGATG
GCCTGGGACGATATTGGGAAGATTGTTCTGGCTTACTACTGGATGCTTCC
CACAAACACTAGTCTTCCAGCTTGCTGGAACCTCGGAACGGCCAGTTGAG
ATAAAACGGCTGGGATTGCGGGCGACTGGTGTAGCAGAAGCTTCCATTTC
TGTGAGTACCTCCGCCTCCATGATGGCCTGGGACGATATTGGGAAGATTG
CTTTTGATGACGCAGATGGCATTATTGAGTCTTCTGTAGGATTCGCTCCA
TGTGAAGCGAGATATGTGCGTGTGACCATTACGCATGGCCACGAAGACTT
TGCGTCCATCCATTCCATTCTTTTGATGACGCAGATGGCATTATTGAGTC
TTCTGTAGGATTCGCTCCATGTGAAGCGAGATATGTGCGTGTGACCATTA
CGCATGGCCACGAAGACTTTGCGTCCATCCATTCCATT
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