mRNA_M-pyrifera_M_contig87670.20369.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87670.20369.1
Unique NamemRNA_M-pyrifera_M_contig87670.20369.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87670.20369.1 vs. uniprot
Match: A0A7S3LLT2_9STRA (Coatomer subunit gamma n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LLT2_9STRA)

HSP 1 Score: 303 bits (777), Expect = 3.130e-93
Identity = 160/276 (57.97%), Postives = 205/276 (74.28%), Query Frame = 1
Query:    1 AISPQTAFGFLERHLHYRSAMVSYEAARAVASLPGASERDVEPAVRALYELLAHARPAVRFGAVRTLSEIAETYPSLVSTTNADLELLISDPNRTIATYAITTLLRVGDERSVDKLLKRIGAFLTDLGDDFKVVVVRAVHALALRMQRKAPALMVFLSNGLREEGGLEFKRSIVEALIDLAERLPRTRVDALLHLCEFIEDCEFTALSVRVLHYLGDAGPSTRFPSSFIRFIYNRIILENAAVRAAAVASLTKFGAKVPSLRNSIVILLERCQGDE 828
            A + Q A+GFLE  L +++ MV YEAARA+  LP  + RD+ P++  L   L+  +P +RF AVRTL+E+A  +P +V+  N D+E LI D NR+IAT AITTLL+ G E SVD+L+K+I  F++D+ D+FK+VVV+AV AL L+   KA  L+ FLSN LREEGG EFK+ IV+ +++L ER+P T+  AL HLCEFIEDCEFT LS R+LH LG+ GPST  P+ FIRFIYNRIILENA VRAAAV++L KFGAKV SLR SI+ LL R Q DE
Sbjct:  283 ATNAQAAYGFLESCLRHKNEMVIYEAARAMCRLPEVAARDILPSITVLQLFLSSPKPTLRFAAVRTLNEVAIKHPGVVAKCNEDMEGLIGDSNRSIATLAITTLLKTGSESSVDRLMKQIQGFISDIADEFKIVVVQAVRALCLKFNSKARVLLNFLSNILREEGGFEFKKVIVDTMLELIERIPETKRAALFHLCEFIEDCEFTQLSARILHLLGEEGPSTEHPAKFIRFIYNRIILENAHVRAAAVSALGKFGAKVESLRPSIITLLTRSQLDE 558          
BLAST of mRNA_M-pyrifera_M_contig87670.20369.1 vs. uniprot
Match: A0A7S1DYS7_HEMAN (Hypothetical protein (Fragment) n=3 Tax=Hemiselmis TaxID=77924 RepID=A0A7S1DYS7_HEMAN)

HSP 1 Score: 288 bits (737), Expect = 8.130e-90
Identity = 150/271 (55.35%), Postives = 196/271 (72.32%), Query Frame = 1
Query:   13 QTAFGFLERHLHYRSAMVSYEAARAVASLPGASERDVEPAVRALYELLAHARPAVRFGAVRTLSEIAETYPSLVSTTNADLELLISDPNRTIATYAITTLLRVGDERSVDKLLKRIGAFLTDLGDDFKVVVVRAVHALALRMQRKAPALMVFLSNGLREEGGLEFKRSIVEALIDLAERLPRTRVDALLHLCEFIEDCEFTALSVRVLHYLGDAGPSTRFPSSFIRFIYNRIILENAAVRAAAVASLTKFGAKVPSLRNSIVILLERCQGD 825
            +T + FLE  L +RS MV +EAARA+  +PG ++R++ PA+  L   L+  +P +RF AVR L+ +A  +P  V+T N DLE +I+D NR+IAT AITTLL+ G E SVD+L+K+IG+F++D+ D+FKV+VV A+ AL L+  +K   LM FLSN LREEGG EFKRSIV+ ++ L   +P      L HLCEFIEDCEFT LS ++LH +G+ GP T  P  +IR IYNRIILENA VRAAAV+SL KFGA VPSLR+S+V LL RC  D
Sbjct:  284 RTYYDFLESCLRHRSEMVIFEAARAICQMPGVTQRELTPAITVLQLFLSSPKPTLRFAAVRALNRVAMAFPLTVTTCNVDLENMIADSNRSIATLAITTLLKTGSESSVDRLMKQIGSFMSDIADEFKVIVVDAIRALCLKYPQKHRILMNFLSNVLREEGGFEFKRSIVDTILVLIGEIPDAVESGLGHLCEFIEDCEFTFLSTQILHLVGEKGPKTSAPGKYIRHIYNRIILENATVRAAAVSSLAKFGASVPSLRDSMVTLLRRCVHD 554          
BLAST of mRNA_M-pyrifera_M_contig87670.20369.1 vs. uniprot
Match: D7FHC8_ECTSI (Coatomer subunit gamma n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHC8_ECTSI)

HSP 1 Score: 288 bits (736), Expect = 3.860e-88
Identity = 145/276 (52.54%), Postives = 201/276 (72.83%), Query Frame = 1
Query:    1 AISPQTAFGFLERHLHYRSAMVSYEAARAVASLPGASERDVEPAVRALYELLAHARPAVRFGAVRTLSEIAETYPSLVSTTNADLELLISDPNRTIATYAITTLLRVGDERSVDKLLKRIGAFLTDLGDDFKVVVVRAVHALALRMQRKAPALMVFLSNGLREEGGLEFKRSIVEALIDLAERLPRTRVDALLHLCEFIEDCEFTALSVRVLHYLGDAGPSTRFPSSFIRFIYNRIILENAAVRAAAVASLTKFGAKVPSLRNSIVILLERCQGDE 828
            A + + A+ FLE  L +RS MV YEAARA+ +LPG    D+ PA+  L   L   +PA++FG +RTLSE+A  YP  +   N+D+E+LISDPNR+IAT AITTLL+ G E SVD+L+K+I +F+ ++ D+FK+VVV+A+  L L+   K   L+ FL+  LREEGG EFK++I + +++L   +P T+  +L HLC+FIEDCEFTALS ++L  +G+ GPST  P+ +IRFIYNR+ILENAAVRAAAV +L KF A++PSLR SI +L++R   DE
Sbjct:  134 ATNARAAYQFLESSLRHRSDMVMYEAARAICNLPGVEMNDLSPAINVLQMFLTSVKPALKFGTMRTLSEVAAKYPMSILKCNSDMEVLISDPNRSIATLAITTLLKTGSEGSVDRLMKQISSFMNEIADEFKIVVVKAIRQLCLKYPLKHRVLVGFLATFLREEGGFEFKKAITDCIVELMTAIPETKEMSLFHLCDFIEDCEFTALSTQILSLVGELGPSTSAPARYIRFIYNRVILENAAVRAAAVPALAKFAARLPSLRPSIRVLIKRSLLDE 409          
BLAST of mRNA_M-pyrifera_M_contig87670.20369.1 vs. uniprot
Match: A0A7S1GAC4_9STRA (Coatomer subunit gamma n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GAC4_9STRA)

HSP 1 Score: 289 bits (740), Expect = 6.300e-88
Identity = 153/276 (55.43%), Postives = 203/276 (73.55%), Query Frame = 1
Query:    1 AISPQTAFGFLERHLHYRSAMVSYEAARAVASLPGASERDVEPAVRALYELLAHARPAVRFGAVRTLSEIAETYPSLVSTTNADLELLISDPNRTIATYAITTLLRVGDERSVDKLLKRIGAFLTDLGDDFKVVVVRAVHALALRMQRKAPALMVFLSNGLREEGGLEFKRSIVEALIDLAERLPRTRVDALLHLCEFIEDCEFTALSVRVLHYLGDAGPSTRFPSSFIRFIYNRIILENAAVRAAAVASLTKFGAKVPSLRNSIVILLERCQGDE 828
            A + + A+ FLE  L  RS MV YEAARA+ +LP    RD+ PAV  L+  L+  +PA+RF AV+TLS++A TYP+LVS  N DLE LI+D NRTIAT AITTLL+ G E SV+K +K+I +F++++ D+F++ VVRAVH L LR   K   L  +L++ LREEGG +FK++I++++++L +++P  + + L  LCEFIEDCE+T LS RVLH LGDAGP+T  P SFIRFIYNR+ILENAAVR+AAV +L KF A+V  LR SIV LL R   DE
Sbjct:  270 ATNARAAYEFLESCLKERSEMVMYEAARAICALPKVVPRDLAPAVTVLHLFLSSPKPALRFAAVKTLSKVAMTYPALVSKCNDDLESLITDSNRTIATLAITTLLKTGSESSVEKHMKQIMSFMSEIADEFRITVVRAVHELCLRYPAKHRLLFGYLADALREEGGYDFKKAILDSMMELIDKIPDAKTEGLFQLCEFIEDCEYTQLSTRVLHLLGDAGPTTSQPGSFIRFIYNRVILENAAVRSAAVTALAKFAARVEWLRPSIVALLARSLHDE 545          
BLAST of mRNA_M-pyrifera_M_contig87670.20369.1 vs. uniprot
Match: A0A448Z3S0_9STRA (Coatomer subunit gamma n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z3S0_9STRA)

HSP 1 Score: 289 bits (740), Expect = 1.080e-87
Identity = 150/272 (55.15%), Postives = 198/272 (72.79%), Query Frame = 1
Query:   13 QTAFGFLERHLHYRSAMVSYEAARAVASLPGASERDVEPAVRALYELLAHARPAVRFGAVRTLSEIAETYPSLVSTTNADLELLISDPNRTIATYAITTLLRVGDERSVDKLLKRIGAFLTDLGDDFKVVVVRAVHALALRMQRKAPALMVFLSNGLREEGGLEFKRSIVEALIDLAERLPRTRVDALLHLCEFIEDCEFTALSVRVLHYLGDAGPSTRFPSSFIRFIYNRIILENAAVRAAAVASLTKFGAKVPSLRNSIVILLERCQGDE 828
            Q  + FLE  L ++S MV YEA RA+ SLPGA  +D+  AV  L   L+ ++PA R+ A+RTL+++A T P +VS  N DLE L+ DPNR+IAT AITTLL+ G E S+D+LLK+I AFLT++ D+FK+ VV+++  L L    K   L+ F+SN LREEGG +FK+SIV ++I L  ++P T   +LLHLCEFIEDCEFT LS  +LH LG+ GP+T  P+ +IRFIYNR+ILENAAVRAAAV++L KF A  PSLR+SI+ LL+R   DE
Sbjct:  281 QQGYQFLEASLRHKSEMVVYEATRAICSLPGAEPQDLSGAVSVLQLFLSSSKPATRYAAMRTLAKLANTQPRVVSKCNEDLESLLGDPNRSIATLAITTLLKTGSENSIDRLLKQISAFLTEIADEFKITVVKSLQKLCLTYPAKHRVLVGFMSNFLREEGGFDFKKSIVSSIISLIRQVPETTESSLLHLCEFIEDCEFTRLSTEILHLLGELGPTTSAPARYIRFIYNRVILENAAVRAAAVSALGKFAANCPSLRSSILTLLKRSLYDE 552          
BLAST of mRNA_M-pyrifera_M_contig87670.20369.1 vs. uniprot
Match: A0A2R5GUB9_9STRA (Coatomer subunit gamma n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GUB9_9STRA)

HSP 1 Score: 288 bits (737), Expect = 1.720e-87
Identity = 147/276 (53.26%), Postives = 203/276 (73.55%), Query Frame = 1
Query:    1 AISPQTAFGFLERHLHYRSAMVSYEAARAVASLPGASERDVEPAVRALYELLAHARPAVRFGAVRTLSEIAETYPSLVSTTNADLELLISDPNRTIATYAITTLLRVGDERSVDKLLKRIGAFLTDLGDDFKVVVVRAVHALALRMQRKAPALMVFLSNGLREEGGLEFKRSIVEALIDLAERLPRTRVDALLHLCEFIEDCEFTALSVRVLHYLGDAGPSTRFPSSFIRFIYNRIILENAAVRAAAVASLTKFGAKVPSLRNSIVILLERCQGDE 828
            A + + A+ FLE  LH+R  MV YEAARA+  LP A+ +D+ PA+  L   L+  +P++RF AVRTL+E+A  +P+ V+  N D+E LI D N++IAT AITTLL+ G E  +DKL+K+I  F++D+GD+FK+VVVRAV AL L+   K   ++ FLSN LREEGG +FK+ IV++++ L E++P+++  AL HLCEFIEDCEF +LS ++LH LG+ GP+T  P+ FIRFIYNR+ILENA VRAAAV +L KFG++V  L  SI+ILLE    D+
Sbjct:  262 ATNSRAAYEFLENCLHHRHEMVIYEAARAMCRLPEAAPQDIMPAITVLQLFLSSPKPSLRFAAVRTLNEVAMKHPNAVTRCNEDMEGLIGDANKSIATLAITTLLKTGSEGGIDKLMKQIAGFMSDIGDEFKIVVVRAVRALCLKYPNKQRVMLNFLSNILREEGGFDFKKVIVDSILHLIEKIPQSKEAALFHLCEFIEDCEFNSLSAQILHVLGEMGPTTTHPAKFIRFIYNRVILENAHVRAAAVTALGKFGSQVEDLTESIIILLESSLQDD 537          
BLAST of mRNA_M-pyrifera_M_contig87670.20369.1 vs. uniprot
Match: B5Y4T4_PHATC (Coatomer subunit gamma n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y4T4_PHATC)

HSP 1 Score: 287 bits (735), Expect = 3.300e-87
Identity = 149/272 (54.78%), Postives = 195/272 (71.69%), Query Frame = 1
Query:   13 QTAFGFLERHLHYRSAMVSYEAARAVASLPGASERDVEPAVRALYELLAHARPAVRFGAVRTLSEIAETYPSLVSTTNADLELLISDPNRTIATYAITTLLRVGDERSVDKLLKRIGAFLTDLGDDFKVVVVRAVHALALRMQRKAPALMVFLSNGLREEGGLEFKRSIVEALIDLAERLPRTRVDALLHLCEFIEDCEFTALSVRVLHYLGDAGPSTRFPSSFIRFIYNRIILENAAVRAAAVASLTKFGAKVPSLRNSIVILLERCQGDE 828
            Q  + FLE  L ++S +V YEAARA   LP A  +D++PA+  L   L+  +PAVRF ++RTL+++A  +P +VS  N DLE LI D NR+IAT AITTLL+ G E S+D+LLK+I AFLT++ D++K+ VVR++  L L    K   L+ FLSN LREEGG +FKRSIV ++I L   +P +   +LLHLCEFIEDCEFT LS ++LH LG+ GP T  P  +IRFIYNR+ILEN+AVRAAAV++LTKF A  PSLR SI+ LL+R   DE
Sbjct:  276 QAGYQFLEASLRHKSELVVYEAARACCHLPAAEPQDLQPAIGVLQLFLSSPKPAVRFASIRTLAQVANQHPRVVSKCNEDLEALIGDSNRSIATLAITTLLKTGSENSIDRLLKQISAFLTEIADEYKITVVRSLQKLCLTYPSKHRVLVGFLSNFLREEGGFDFKRSIVNSIISLIRAVPESTESSLLHLCEFIEDCEFTMLSTQILHLLGELGPKTSAPPRYIRFIYNRVILENSAVRAAAVSALTKFAASCPSLRTSILTLLQRSLVDE 547          
BLAST of mRNA_M-pyrifera_M_contig87670.20369.1 vs. uniprot
Match: A0A7S1C1K4_9STRA (Coatomer subunit gamma n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C1K4_9STRA)

HSP 1 Score: 285 bits (730), Expect = 2.730e-86
Identity = 142/272 (52.21%), Postives = 196/272 (72.06%), Query Frame = 1
Query:   13 QTAFGFLERHLHYRSAMVSYEAARAVASLPGASERDVEPAVRALYELLAHARPAVRFGAVRTLSEIAETYPSLVSTTNADLELLISDPNRTIATYAITTLLRVGDERSVDKLLKRIGAFLTDLGDDFKVVVVRAVHALALRMQRKAPALMVFLSNGLREEGGLEFKRSIVEALIDLAERLPRTRVDALLHLCEFIEDCEFTALSVRVLHYLGDAGPSTRFPSSFIRFIYNRIILENAAVRAAAVASLTKFGAKVPSLRNSIVILLERCQGDE 828
            +T + FLE  L ++S +V YEAARA+ S+PG    D+ PA+  L  LLA  +PAVRFG+++ LS +++ +P +VS  N DLE LI DPNR+IAT AITTLL+ G E +VD+L+K+I +F+ ++ D++K+ VV ++  L L+   K   L+ FLSN LREEGG EFK++I +A++ L +  P T   +L HLCEFIEDCEFT LS R+LH +G+ GP+T  P  ++RF+YNR+ILEN AVRAA+V++L KF AKVPSLR SIV LL +   DE
Sbjct:  280 KTGYQFLEMSLRHKSELVVYEAARAICSMPGIEPSDLTPAISCLQLLLASPKPAVRFGSMKILSAVSQVHPRIVSKCNDDLEALIGDPNRSIATLAITTLLKTGSENAVDRLMKQISSFMAEINDEYKITVVNSIQQLCLQYPAKHRVLVGFLSNFLREEGGFEFKKAITDAIVHLMDAAPETTESSLFHLCEFIEDCEFTMLSTRILHLIGNIGPTTSAPGRYVRFVYNRVILENPAVRAASVSALAKFAAKVPSLRLSIVTLLNKSLSDE 551          
BLAST of mRNA_M-pyrifera_M_contig87670.20369.1 vs. uniprot
Match: I2CP15_NANGC (Adaptin_N domain-containing protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CP15_NANGC)

HSP 1 Score: 280 bits (715), Expect = 3.200e-86
Identity = 140/267 (52.43%), Postives = 195/267 (73.03%), Query Frame = 1
Query:   28 FLERHLHYRSAMVSYEAARAVASLPGASERDVEPAVRALYELLAHARPAVRFGAVRTLSEIAETYPSLVSTTNADLELLISDPNRTIATYAITTLLRVGDERSVDKLLKRIGAFLTDLGDDFKVVVVRAVHALALRMQRKAPALMVFLSNGLREEGGLEFKRSIVEALIDLAERLPRTRVDALLHLCEFIEDCEFTALSVRVLHYLGDAGPSTRFPSSFIRFIYNRIILENAAVRAAAVASLTKFGAKVPSLRNSIVILLERCQGDE 828
            F+E  L +++ +V YEAA+A+  LPG   RD+ PA+  L   LA  RPA RF A+RTLSE+A TYP +V+  N D+E L+SD NR+I T AITTLL+ G+E SVD+L+K+I  ++ D+ D+FK+++V+++  L L+   K   L+ FL+N LREEGG E+K++I EA++ L + +P T+  +L HLCEFIEDCEFT LS ++LH +GD GP+   P+ +IRF+YNR+ILENA VRAAAV++L KF  KVPSLR SI +LL+R   DE
Sbjct:  297 FVEGCLRHKNEIVMYEAAKAICRLPGVEARDLGPAITVLQLFLASPRPAFRFCAMRTLSEVALTYPVVVTKCNDDMEALLSDANRSIGTLAITTLLKTGEEGSVDRLMKQISTYMNDIADEFKILIVQSIKQLCLKYPHKHALLLGFLANFLREEGGYEYKKAITEAIVSLMDAIPLTKDASLFHLCEFIEDCEFTDLSTQILHLIGDLGPTAASPARYIRFVYNRVILENAVVRAAAVSTLAKFAVKVPSLRPSICVLLQRSLQDE 563          
BLAST of mRNA_M-pyrifera_M_contig87670.20369.1 vs. uniprot
Match: A0A1Z5JGT2_FISSO (Coatomer subunit gamma n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JGT2_FISSO)

HSP 1 Score: 285 bits (728), Expect = 5.800e-86
Identity = 150/278 (53.96%), Postives = 201/278 (72.30%), Query Frame = 1
Query:    1 AISP--QTAFGFLERHLHYRSAMVSYEAARAVASLPGASERDVEPAVRALYELLAHARPAVRFGAVRTLSEIAETYPSLVSTTNADLELLISDPNRTIATYAITTLLRVGDERSVDKLLKRIGAFLTDLGDDFKVVVVRAVHALALRMQRKAPALMVFLSNGLREEGGLEFKRSIVEALIDLAERLPRTRVDALLHLCEFIEDCEFTALSVRVLHYLGDAGPSTRFPSSFIRFIYNRIILENAAVRAAAVASLTKFGAKVPSLRNSIVILLERCQGDE 828
            A SP  ++ + FLE  L ++S +V YEAARA+ +LP A  +D+ PA+  L   L+  +PAVRF ++RTL+ +A T+P +VS  N DLE LI D NR+IAT AITTLL+ G E S+D+LLK+I AFLT++ D++K+ VVR++  L L    K   L+ FLSN LREEGG +FKRSIV ++I L   +P +   +LLHLCEFIEDCEFT LS R+L+ LG+ GP+T  P+ +IRFIYNR+ILEN+AVRAAAV++L +F A  PSLR SI+ LL+R   DE
Sbjct:  281 ATSPVIKSGYAFLEASLRHKSELVVYEAARALCNLPAAEPQDLNPAISVLQLFLSSPKPAVRFASIRTLAAVANTHPRVVSKCNEDLEGLIGDSNRSIATLAITTLLKTGSENSIDRLLKQISAFLTEIADEYKITVVRSLQKLCLTYPAKHRVLVGFLSNFLREEGGFDFKRSIVNSIISLIRAVPESTESSLLHLCEFIEDCEFTMLSTRILNLLGELGPTTSAPARYIRFIYNRVILENSAVRAAAVSALARFAAACPSLRTSIMTLLKRSLVDE 558          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87670.20369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3LLT2_9STRA3.130e-9357.97Coatomer subunit gamma n=1 Tax=Aplanochytrium stoc... [more]
A0A7S1DYS7_HEMAN8.130e-9055.35Hypothetical protein (Fragment) n=3 Tax=Hemiselmis... [more]
D7FHC8_ECTSI3.860e-8852.54Coatomer subunit gamma n=2 Tax=Ectocarpus TaxID=28... [more]
A0A7S1GAC4_9STRA6.300e-8855.43Coatomer subunit gamma n=1 Tax=Bicosoecida sp. CB-... [more]
A0A448Z3S0_9STRA1.080e-8755.15Coatomer subunit gamma n=1 Tax=Pseudo-nitzschia mu... [more]
A0A2R5GUB9_9STRA1.720e-8753.26Coatomer subunit gamma n=1 Tax=Hondaea fermentalgi... [more]
B5Y4T4_PHATC3.300e-8754.78Coatomer subunit gamma n=3 Tax=Phaeodactylum trico... [more]
A0A7S1C1K4_9STRA2.730e-8652.21Coatomer subunit gamma n=2 Tax=Corethron hystrix T... [more]
I2CP15_NANGC3.200e-8652.43Adaptin_N domain-containing protein n=2 Tax=Nannoc... [more]
A0A1Z5JGT2_FISSO5.800e-8653.96Coatomer subunit gamma n=2 Tax=Fistulifera solaris... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87670contigM-pyrifera_M_contig87670:3..830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score287.7
Seed ortholog evalue5.6e-75
Seed eggNOG ortholog2880.D7FHC8
Preferred nameCOPG
KEGG koko:K17267
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0005829,GO:0005886,GO:0005911,GO:0009506,GO:0009507,GO:0009536,GO:0012505,GO:0012506,GO:0016020,GO:0030054,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0048475,GO:0055044,GO:0071944,GO:0097708,GO:0098588,GO:0098796,GO:0098805
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG5240@1,KOG1078@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Exons1
Model size828
Cds size828
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816785.88522-CDS-M-pyrifera_M_contig87670:2..8301622816785.88522-CDS-M-pyrifera_M_contig87670:2..830Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87670 3..830 -
1692278177.5516477-CDS-M-pyrifera_M_contig87670:2..8301692278177.5516477-CDS-M-pyrifera_M_contig87670:2..830Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87670 3..830 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87670.20369.1prot_M-pyrifera_M_contig87670.20369.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87670 3..830 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87670.20369.1

>prot_M-pyrifera_M_contig87670.20369.1 ID=prot_M-pyrifera_M_contig87670.20369.1|Name=mRNA_M-pyrifera_M_contig87670.20369.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=276bp
AISPQTAFGFLERHLHYRSAMVSYEAARAVASLPGASERDVEPAVRALYE
LLAHARPAVRFGAVRTLSEIAETYPSLVSTTNADLELLISDPNRTIATYA
ITTLLRVGDERSVDKLLKRIGAFLTDLGDDFKVVVVRAVHALALRMQRKA
PALMVFLSNGLREEGGLEFKRSIVEALIDLAERLPRTRVDALLHLCEFIE
DCEFTALSVRVLHYLGDAGPSTRFPSSFIRFIYNRIILENAAVRAAAVAS
LTKFGAKVPSLRNSIVILLERCQGDE
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mRNA from alignment at M-pyrifera_M_contig87670:3..830-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87670.20369.1 ID=mRNA_M-pyrifera_M_contig87670.20369.1|Name=mRNA_M-pyrifera_M_contig87670.20369.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig87670:3..830- (Macrocystis pyrifera P11B4 male)
GCCATTTCGCCGCAAACCGCCTTTGGCTTCCTGGAGCGACACCTGCACTA CCGCTCGGCCATGGTCAGCTACGAGGCCGCCAGAGCAGTGGCTTCGCTGC CCGGAGCTTCGGAGAGGGACGTGGAGCCCGCGGTTCGGGCTCTGTACGAG TTGCTGGCACACGCGAGGCCGGCAGTCCGCTTTGGCGCTGTTCGCACGCT TTCCGAAATTGCAGAAACCTACCCTTCTCTCGTGTCCACCACCAACGCGG ACCTGGAGCTCCTCATTTCCGACCCCAACCGCACCATCGCCACCTACGCC ATCACCACGCTGCTGCGTGTGGGAGACGAGAGGTCGGTGGACAAACTCCT CAAGCGCATCGGGGCATTCCTCACCGACCTCGGCGACGATTTCAAAGTTG TCGTGGTGCGCGCAGTGCATGCTCTCGCCCTCCGTATGCAGCGCAAAGCG CCTGCGCTCATGGTCTTCCTCTCCAACGGGCTGCGCGAAGAGGGCGGGCT CGAATTCAAGCGCTCCATCGTCGAAGCTCTCATCGACCTCGCAGAGCGAC TGCCACGAACGCGGGTGGACGCCCTCTTGCACCTCTGCGAGTTTATCGAA GATTGCGAATTCACGGCGCTCTCCGTCAGAGTGCTCCACTACCTCGGAGA CGCCGGCCCTTCCACGCGCTTCCCTTCCTCCTTCATCCGGTTCATCTACA ACCGAATCATCCTCGAAAACGCAGCGGTCAGAGCGGCGGCAGTCGCCTCG CTCACAAAGTTTGGAGCAAAAGTCCCTTCCCTCCGAAACTCCATCGTCAT CCTCCTCGAACGCTGCCAAGGAGACGAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87670:3..830-

>mRNA_M-pyrifera_M_contig87670.20369.1 ID=mRNA_M-pyrifera_M_contig87670.20369.1|Name=mRNA_M-pyrifera_M_contig87670.20369.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1656bp|location=Sequence derived from alignment at M-pyrifera_M_contig87670:3..830- (Macrocystis pyrifera P11B4 male)
GCCATTTCGCCGCAAACCGCCTTTGGCTTCCTGGAGCGACACCTGCACTA
CCGCTCGGCCATGGTCAGCTACGAGGCCGCCAGAGCAGTGGCTTCGCTGC
CCGGAGCTTCGGAGAGGGACGTGGAGCCCGCGGTTCGGGCTCTGTACGAG
TTGCTGGCACACGCGAGGCCGGCAGTCCGCTTTGGCGCTGTTCGCACGCT
TTCCGAAATTGCAGAAACCTACCCTTCTCTCGTGTCCACCACCAACGCGG
ACCTGGAGCTCCTCATTTCCGACCCCAACCGCACCATCGCCACCTACGCC
ATCACCACGCTGCTGCGTGTGGGAGACGAGAGGTCGGTGGACAAACTCCT
CAAGCGCATCGGGGCATTCCTCACCGACCTCGGCGACGATTTCAAAGTTG
TCGTGGTGCGCGCAGTGCATGCTCTCGCCCTCCGTATGCAGCGCAAAGCG
CCTGCGCTCATGGTCTTCCTCTCCAACGGGCTGCGCGAAGAGGGCGGGCT
CGAATTCAAGCGCTCCATCGTCGAAGCTCTCATCGACCTCGCAGAGCGAC
TGCCACGAACGCGGGTGGACGCCCTCTTGCACCTCTGCGAGTTTATCGAA
GATTGCGAATTCACGGCGCTCTCCGTCAGAGTGCTCCACTACCTCGGAGA
CGCCGGCCCTTCCACGCGCTTCCCTTCCTCCTTCATCCGGTTCATCTACA
ACCGAATCATCCTCGAAAACGCAGCGGTCAGAGCGGCGGCAGTCGCCTCG
CTCACAAAGTTTGGAGCAAAAGTCCCTTCCCTCCGAAACTCCATCGTCAT
CCTCCTCGAACGCTGCCAAGGAGACGAAGCCATTTCGCCGCAAACCGCCT
TTGGCTTCCTGGAGCGACACCTGCACTACCGCTCGGCCATGGTCAGCTAC
GAGGCCGCCAGAGCAGTGGCTTCGCTGCCCGGAGCTTCGGAGAGGGACGT
GGAGCCCGCGGTTCGGGCTCTGTACGAGTTGCTGGCACACGCGAGGCCGG
CAGTCCGCTTTGGCGCTGTTCGCACGCTTTCCGAAATTGCAGAAACCTAC
CCTTCTCTCGTGTCCACCACCAACGCGGACCTGGAGCTCCTCATTTCCGA
CCCCAACCGCACCATCGCCACCTACGCCATCACCACGCTGCTGCGTGTGG
GAGACGAGAGGTCGGTGGACAAACTCCTCAAGCGCATCGGGGCATTCCTC
ACCGACCTCGGCGACGATTTCAAAGTTGTCGTGGTGCGCGCAGTGCATGC
TCTCGCCCTCCGTATGCAGCGCAAAGCGCCTGCGCTCATGGTCTTCCTCT
CCAACGGGCTGCGCGAAGAGGGCGGGCTCGAATTCAAGCGCTCCATCGTC
GAAGCTCTCATCGACCTCGCAGAGCGACTGCCACGAACGCGGGTGGACGC
CCTCTTGCACCTCTGCGAGTTTATCGAAGATTGCGAATTCACGGCGCTCT
CCGTCAGAGTGCTCCACTACCTCGGAGACGCCGGCCCTTCCACGCGCTTC
CCTTCCTCCTTCATCCGGTTCATCTACAACCGAATCATCCTCGAAAACGC
AGCGGTCAGAGCGGCGGCAGTCGCCTCGCTCACAAAGTTTGGAGCAAAAG
TCCCTTCCCTCCGAAACTCCATCGTCATCCTCCTCGAACGCTGCCAAGGA
GACGAA
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