mRNA_M-pyrifera_M_contig8767.20368.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8767.20368.1
Unique NamemRNA_M-pyrifera_M_contig8767.20368.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8767.20368.1 vs. uniprot
Match: A0A6H5KUD6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KUD6_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.650e-29
Identity = 55/81 (67.90%), Postives = 70/81 (86.42%), Query Frame = 1 
Query:   46 AVEVESIEQAQSIILSAAESRDQDPDTVIEAIRMIERKGGSRKPADGNGEGLEPKFDLLTDNGNWKLIFTTGDMKTQKKIG 288
            A  +E+IE AQ++I+ AAE+RD DPDTVIEAIR+IE+ GGS+KP +G  +  +PKFDLLTDNGNW+LIFTTGD+KTQKK+G
Sbjct:   86 AAALETIEDAQTVIVRAAETRDVDPDTVIEAIRLIEKSGGSKKPLEGR-DSSQPKFDLLTDNGNWRLIFTTGDVKTQKKLG 165
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BLAST of mRNA_M-pyrifera_M_contig8767.20368.1 vs. uniprot
Match: A0A1E7EYI4_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EYI4_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 3.250e-7
Identity = 31/80 (38.75%), Postives = 48/80 (60.00%), Query Frame = 1 
Query:   55 VESIEQAQSIILSAAESRDQDPDTVIEAIRMIERKGGSRKPADGNGEGLEPKFDLLTDNG--NWKLIFTTGDMKTQKKIG 288
            ++ I+ A+ I+  AAE++ +DPD V+ A+  +E+   SRK    +    E     L+  G  NW+LIFTTG + TQKK+G
Sbjct:   59 LQQIDDAKKILYRAAETKKEDPDIVVAALLTLEKL--SRKANQADPSRAEQTLSALSGEGGVNWRLIFTTGTIDTQKKLG 136
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BLAST of mRNA_M-pyrifera_M_contig8767.20368.1 vs. uniprot
Match: A0A448ZK81_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZK81_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 4.140e-7
Identity = 30/79 (37.97%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:   55 VESIEQAQSIILSAAESRDQDPDTVIEAIRMIERKGGSRKPADGNGEGLEPKFDLLTDNG-NWKLIFTTGDMKTQKKIG 288
            ++ +E  + I+  AAE++ +DPDTV++A+  +E+   SRK    +    E     L++ G NW+LIFTTG + TQ+K+G
Sbjct:   51 LDQMEAXKQILYRAAETKQEDPDTVVDALLDLEKL--SRKANKADPSQSENTLKALSEGGVNWRLIFTTGTVDTQRKLG 127
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BLAST of mRNA_M-pyrifera_M_contig8767.20368.1 vs. uniprot
Match: A0A7S4AWT0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AWT0_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 7.960e-6
Identity = 29/76 (38.16%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:   64 IEQAQSIILSAAESRDQDPDTVIEAIRMIERKGGSRKPADGNGEGLEPKFDLLTDNG-NWKLIFTTGDMKTQKKIG 288
            +E A+ I+  AAE++ +D DTV++A+  +E+   SRK    +    E   + L++ G +W+LIFTTG + TQ+K+G
Sbjct:   70 MEAAKQILYRAAETKQEDADTVVDALLDLEKL--SRKANKVDPSQSEKTLNALSEGGVDWRLIFTTGTVDTQRKLG 143
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BLAST of mRNA_M-pyrifera_M_contig8767.20368.1 vs. uniprot
Match: A0A7S2TG87_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TG87_9EUKA)

HSP 1 Score: 51.2 bits (121), Expect = 1.730e-5
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:   94 AAESRDQDPDTVIEAIRMIERKGGSRKPADGNGEGLEPKFDLLTDNGNWKLIFTTGDMKTQKKIG 288
            AA  RD DP +V+EAI  +E+     KPA       +    +   +G+W+L+FTTGD+KTQKK+G
Sbjct:   61 AAAKRDIDPSSVLEAIYYLEKS----KPA------AQRAIPVSKLSGSWRLVFTTGDVKTQKKMG 115
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BLAST of mRNA_M-pyrifera_M_contig8767.20368.1 vs. uniprot
Match: A0A7S2MZ76_9STRA (Hypothetical protein n=2 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MZ76_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 2.990e-5
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:   58 ESIEQAQSIILSAAESRDQDPDTVIEAIRMIERKGGSRKPADGNGEGLEPKFDLLTDNGNWKLIFTTGDMKTQKKI 285
            E IE+A +I+  AAE++ QDP+TV+ A+  +E+    RK A    E       L   NG+W+LIFTTG   TQ +I
Sbjct:   97 EPIEEALTILNEAAETKSQDPETVVTALEDLEKL--MRKKA--KAEPTAAANVLKNLNGSWRLIFTTGTKTTQDRI 168
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BLAST of mRNA_M-pyrifera_M_contig8767.20368.1 vs. uniprot
Match: A0A7S0EPI4_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EPI4_9EUKA)

HSP 1 Score: 49.7 bits (117), Expect = 7.040e-5
Identity = 29/76 (38.16%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:   61 SIEQAQSIILSAAESRDQDPDTVIEAIRMIERKGGSRKPADGNGEGLEPKFDLLTDNGNWKLIFTTGDMKTQKKIG 288
            S++ A ++   AA SR+ DPDTV E +  +E+  G R  A  +G  L  +  L + +G W+L+FTTG ++ Q K+G
Sbjct:   55 SVDSALALCRVAATSREADPDTVCEEMLTVEK--GMRDTAKDDGGELS-RSTLQSLDGAWRLVFTTGTVEMQSKLG 127
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BLAST of mRNA_M-pyrifera_M_contig8767.20368.1 vs. uniprot
Match: A0A7S2JZY1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JZY1_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 7.950e-5
Identity = 26/77 (33.77%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:   58 ESIEQAQSIILSAAESRDQDPDTVIEAIRMIERKGGSRKPADGNGEGLEPKFDLLTDNGNWKLIFTTGDMKTQKKIG 288
            E I+ A  ++  AAE++++DPD+V++A+  +E     +  A+ +         L    G W+LIFTTG   +QKK+G
Sbjct:   13 EPIQNALEVLYKAAETKNEDPDSVVDALESLENLMRKKCLAEDDAAANV----LANLEGEWRLIFTTGTQDSQKKLG 85
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8767.20368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KUD6_9PHAE1.650e-2967.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1E7EYI4_9STRA3.250e-738.75Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A448ZK81_9STRA4.140e-737.97Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4AWT0_9STRA7.960e-638.16Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S2TG87_9EUKA1.730e-543.08Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S2MZ76_9STRA2.990e-542.11Hypothetical protein n=2 Tax=Helicotheca tamesis T... [more]
A0A7S0EPI4_9EUKA7.040e-538.16Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S2JZY1_9STRA7.950e-533.77Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8767contigM-pyrifera_M_contig8767:8286..9920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.2
Seed ortholog evalue2.1e-24
Seed eggNOG ortholog2880.D7FN82
Hectar predicted targeting categoryother localisation
EggNOG OGs28KDC@1,2QSU6@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-15_003310.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size290
Cds size288
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816785.8407285-CDS-M-pyrifera_M_contig8767:8285..84301622816785.8407285-CDS-M-pyrifera_M_contig8767:8285..8430Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8767 8286..8430 -
1692278177.5263705-CDS-M-pyrifera_M_contig8767:8285..84301692278177.5263705-CDS-M-pyrifera_M_contig8767:8285..8430Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8767 8286..8430 -
1622816785.8530724-CDS-M-pyrifera_M_contig8767:9777..99201622816785.8530724-CDS-M-pyrifera_M_contig8767:9777..9920Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8767 9778..9920 -
1692278177.5398176-CDS-M-pyrifera_M_contig8767:9777..99201692278177.5398176-CDS-M-pyrifera_M_contig8767:9777..9920Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8767 9778..9920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8767.20368.1prot_M-pyrifera_M_contig8767.20368.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8767 8286..9920 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8767.20368.1

>prot_M-pyrifera_M_contig8767.20368.1 ID=prot_M-pyrifera_M_contig8767.20368.1|Name=mRNA_M-pyrifera_M_contig8767.20368.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
MCRASRAGSSLRMQSAVEVESIEQAQSIILSAAESRDQDPDTVIEAIRMI
ERKGGSRKPADGNGEGLEPKFDLLTDNGNWKLIFTTGDMKTQKKIG
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mRNA from alignment at M-pyrifera_M_contig8767:8286..9920-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8767.20368.1 ID=mRNA_M-pyrifera_M_contig8767.20368.1|Name=mRNA_M-pyrifera_M_contig8767.20368.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1635bp|location=Sequence derived from alignment at M-pyrifera_M_contig8767:8286..9920- (Macrocystis pyrifera P11B4 male)
ATGTGCAGGGCTTCTCGGGCGGGATCATCACTACGAATGCAGAGCGCCGT
GGAGGTTGAATCGATCGAACAGGCGCAGTCGATCATCCTTAGCGCTGCTG
AGAGCAGGGACCAGGACCCGGACACAGTGATCGAGGCCATCAGGTAGGCC
ATCAGGTCCGTGCGTTTTCCCTACATATACATATTGTCTTCCCTACCAAG
GTCGTTAACAGCAGTATAAGTAGCGCGTTTCACGTACGCTCCCGTTCGCA
TATCTACGCGCGGTTCGCAATTTTTTTGTCGTTTACGGATTTGTAATAGT
AGTCCCTGGGAAATTCTCCTAATGTACGAGTACTCGAAACCTCTATTTTT
GCCTGCAAGATGATAGTATTCCTTTCCCTGTATTGACGCCGTTCAAGATT
TAAGTTTGCCCTCCACGGGCGCCGTTCGCACTTTTTTTAGGCGTAGCATG
CATCCCTGCTTGAGAACGACAGGAAAGAGAGGGGTATTATAAGCATTTTT
TTTATTGCACTGGACGTACAAACCGCGCCCAGGCTACAGCAGTAGTTCTG
CACGCCGGTCCAACATGGCGACTCTCACCCTACTGTAGTGTCGCTTTGGA
GCTGTGAACTGCTGCAGCTGCGATGACCTTGAGTATTCCACATTCTACAT
CATGCTTCCACTTGCGCTGTATCCGTACGTCTTCCGTGTAACATGCATCG
CTATTTTCAAGTACTATTTCTAAAATCGGGTTTTGAAGCCTGCCCCCCGC
CTGAGCACCGTGTCGTATACCTTTAGACTATAATAGGACTACTTGAAACT
ATTATAGGACTATTAGAGGAAAGTTTAGGATTTATTGCAAAATCCCAGTC
TTTCTACTTTTTACGTGCTGTCTGAGCTGTCTGTAATTCCCTTCGCGAAA
TCCGAATCCACGTACTCGTACAACTTTTGGTACTTGTCGATTCGCCGGAT
GGAACCCTACTCTATCTACCCTCTCCCCTTGTAACTCTCAAAATCTTGAA
TCTTCGCCTTTCACACATCTGACAGACGAGATGACCAGATCCCCAAGCCC
CAAGTCATTTACAGCAGTAACACGGTATCTCCATTGTCACGAGTACATAG
GTACAGCAGCAGTATACTTCAGGTCATGTATACGAATCCCTGAATCAGAT
ATACCCGTGACGGGTAATACCTGGTACGTGCACGACCTACAGCGGTAGAT
CATGTTTGTCTCTGGTGGGGTCTTTATGACATGGGTCGTTTTGGCGGGTG
AGATCTGCATGATATCTCTGGAACAGGAACATGTCATAACGGCAAAATTA
TCAATGGATCCAATCGATCTATCGAGTACCTTGTCTGGTACTGACGAAAT
ATTTCGGAGTATATGATTTAATGTAGATCTACTTGTAGATTGCACAACAT
CTCACAACGGCAAATATAGGATCTGTTTATAGGTGAGATTTGACTTAGAT
CGCGATCTGATCCATGTTTTTATTTCAATTTATTTGTCAGAATGATCGAG
AGAAAAGGAGGGAGCAGGAAGCCTGCTGACGGAAACGGCGAGGGTTTAGA
GCCGAAGTTCGACCTGCTCACTGACAATGGCAACTGGAAGCTCATCTTCA
CCACAGGGGACATGAAGACGCAAAAAAAAATCGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8767:8286..9920-

>mRNA_M-pyrifera_M_contig8767.20368.1 ID=mRNA_M-pyrifera_M_contig8767.20368.1|Name=mRNA_M-pyrifera_M_contig8767.20368.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig8767:8286..9920- (Macrocystis pyrifera P11B4 male)
ATGTGCAGGGCTTCTCGGGCGGGATCATCACTACGAATGCAGAGCGCCGT
GGAGGTTGAATCGATCGAACAGGCGCAGTCGATCATCCTTAGCGCTGCTG
AGAGCAGGGACCAGGACCCGGACACAGTGATCGAGGCCATCAGATGTGCA
GGGCTTCTCGGGCGGGATCATCACTACGAATGCAGAGCGCCGTGGAGGTT
GAATCGATCGAACAGGCGCAGTCGATCATCCTTAGCGCTGCTGAGAGCAG
GGACCAGGACCCGGACACAGTGATCGAGGCCATCAGAATGATCGAGAGAA
AAGGAGGGAGCAGGAAGCCTGCTGACGGAAACGGCGAGGGTTTAGAGCCG
AAGTTCGACCTGCTCACTGACAATGGCAACTGGAAGCTCATCTTCACCAC
AGGGGACATGAAGACGCAAAAAAAAATCGGCAATGATCGAGAGAAAAGGA
GGGAGCAGGAAGCCTGCTGACGGAAACGGCGAGGGTTTAGAGCCGAAGTT
CGACCTGCTCACTGACAATGGCAACTGGAAGCTCATCTTCACCACAGGGG
ACATGAAGACGCAAAAAAAAATCGGC
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