mRNA_M-pyrifera_M_contig87655.20360.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87655.20360.1
Unique NamemRNA_M-pyrifera_M_contig87655.20360.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig87655.20360.1 vs. uniprot
Match: A0A2D6PU97_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D6PU97_9BACT)

HSP 1 Score: 150 bits (380), Expect = 1.260e-41
Identity = 86/187 (45.99%), Postives = 116/187 (62.03%), Query Frame = 1 
Query:    1 FEPGDLYLYTPAFQGGSSSAGAIVRVDPGGGSPELFVDLATASNSKDQIAYDPFRDRLIFYGGFVPNQIALHLVDANGNLTNIGFDSAAGASTSAFAPRGDGNIYMRTPAAPLEITRLDAANQPHPLLDSTGTVPFSPSGWFASMIQHMEYHAPTNSLVIGTGSNQGICPGGSNQDFNIRRLDLSAD 561
            F  GDLYL+T A+ G SS+ GAI+R+DP  G+  L+ DLAT+  ++  +AYDP+RDRL+F+GGFVPNQI L   DA GN+ ++G  +A+G S     PRGDG +Y+R P     I+ LDAA+Q   L ++ GT P+   G     IQ++ Y   TNSL+    S    CPG  +    I RLDLS D
Sbjct:   29 FRSGDLYLHTVAWTGISSADGAIIRIDPLSGAKTLYKDLATSGPTRQAMAYDPWRDRLLFFGGFVPNQIELFSGDAFGNVQSLGMVTASGGSRGLLTPRGDGIVYLRNPLNLNVISYLDAADQIQVLQNAAGTGPWQ-FGLPGVQIQNLLYVPKTNSLLATRWSFSDPCPGIPSNVTAIHRLDLSPD 214
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BLAST of mRNA_M-pyrifera_M_contig87655.20360.1 vs. uniprot
Match: A0A518BF07_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Pla133 TaxID=2528011 RepID=A0A518BF07_9BACT)

HSP 1 Score: 103 bits (257), Expect = 1.480e-22
Identity = 70/186 (37.63%), Postives = 96/186 (51.61%), Query Frame = 1 
Query:   10 GDLYLYTPAFQGGSSSAGAIVRVDPGGGSPELFVDLATASNSKDQIAYDPFRDRLIFYGGFVPNQ-IALHLVDANGNLTNIGFDSAAGASTSAFAPRGDGNIYMR-TPAAPLEITRLDAANQPHPLLDSTGTVPFSPSGWFASMIQHMEYHAPTNSLVIGTGSNQGICPGGSNQDFNIRRLDLSAD 561
            G+L LY+PA  G SSS+G I  +DP  G+            S D +AYDP+RDRLIF   F     + L   DA GN+ ++GF    G +    A  GDG I++  T   P  I  +DA  Q H L D+TG      S W+     HMEY A  N+L++ +   +G+       D +++RLDLSAD
Sbjct:   28 GELVLYSPALNGVSSSSGGIALIDPLSGAISKPYAFHATLQSDDCLAYDPYRDRLIFGAAFNNGDPMELWAGDALGNVQSLGF---VGTTVRTIAAAGDGRIFLHSTQLPPNSIQWIDAVGQVHLLQDATGQPWQGQSSWWG----HMEYDAEHNALLLAS---RGLTSACGAPDVSVQRLDLSAD 203
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87655.20360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2D6PU97_9BACT1.260e-4145.99Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A518BF07_9BACT1.480e-2237.63Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87655contigM-pyrifera_M_contig87655:269..829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size561
Cds size561
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816785.5530949-CDS-M-pyrifera_M_contig87655:268..8291622816785.5530949-CDS-M-pyrifera_M_contig87655:268..829Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87655 269..829 +
1692278177.3558857-CDS-M-pyrifera_M_contig87655:268..8291692278177.3558857-CDS-M-pyrifera_M_contig87655:268..829Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87655 269..829 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87655.20360.1prot_M-pyrifera_M_contig87655.20360.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87655 269..829 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87655.20360.1

>prot_M-pyrifera_M_contig87655.20360.1 ID=prot_M-pyrifera_M_contig87655.20360.1|Name=mRNA_M-pyrifera_M_contig87655.20360.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=187bp
FEPGDLYLYTPAFQGGSSSAGAIVRVDPGGGSPELFVDLATASNSKDQIA
YDPFRDRLIFYGGFVPNQIALHLVDANGNLTNIGFDSAAGASTSAFAPRG
DGNIYMRTPAAPLEITRLDAANQPHPLLDSTGTVPFSPSGWFASMIQHME
YHAPTNSLVIGTGSNQGICPGGSNQDFNIRRLDLSAD
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mRNA from alignment at M-pyrifera_M_contig87655:269..829+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87655.20360.1 ID=mRNA_M-pyrifera_M_contig87655.20360.1|Name=mRNA_M-pyrifera_M_contig87655.20360.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=561bp|location=Sequence derived from alignment at M-pyrifera_M_contig87655:269..829+ (Macrocystis pyrifera P11B4 male)
TTCGAGCCCGGCGATCTCTACCTCTACACGCCGGCCTTCCAGGGCGGCAG
CTCCTCGGCCGGGGCGATCGTCCGGGTCGATCCGGGCGGCGGCTCGCCGG
AGCTGTTCGTGGACCTCGCCACTGCGTCGAACAGCAAGGACCAGATCGCC
TACGACCCCTTCCGCGACCGCCTGATCTTCTACGGTGGCTTCGTGCCGAA
CCAGATCGCGCTCCACCTCGTCGACGCGAACGGCAACCTCACGAACATCG
GCTTCGACAGCGCCGCGGGCGCCAGCACCTCGGCCTTCGCGCCGCGCGGC
GACGGCAACATCTACATGCGCACGCCGGCTGCACCGCTGGAGATCACCCG
GCTCGACGCGGCGAACCAGCCGCACCCCCTGCTCGACAGCACCGGCACCG
TGCCCTTCAGCCCGAGCGGTTGGTTCGCGAGCATGATCCAACACATGGAG
TACCACGCTCCGACCAACTCGCTCGTGATCGGGACCGGCTCGAACCAGGG
CATCTGCCCGGGCGGCTCCAACCAGGACTTCAACATTCGCCGCCTGGACC
TGTCGGCCGAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87655:269..829+

>mRNA_M-pyrifera_M_contig87655.20360.1 ID=mRNA_M-pyrifera_M_contig87655.20360.1|Name=mRNA_M-pyrifera_M_contig87655.20360.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1122bp|location=Sequence derived from alignment at M-pyrifera_M_contig87655:269..829+ (Macrocystis pyrifera P11B4 male)
TTCGAGCCCGGCGATCTCTACCTCTACACGCCGGCCTTCCAGGGCGGCAG
CTCCTCGGCCGGGGCGATCGTCCGGGTCGATCCGGGCGGCGGCTCGCCGG
AGCTGTTCGTGGACCTCGCCACTGCGTCGAACAGCAAGGACCAGATCGCC
TACGACCCCTTCCGCGACCGCCTGATCTTCTACGGTGGCTTCGTGCCGAA
CCAGATCGCGCTCCACCTCGTCGACGCGAACGGCAACCTCACGAACATCG
GCTTCGACAGCGCCGCGGGCGCCAGCACCTCGGCCTTCGCGCCGCGCGGC
GACGGCAACATCTACATGCGCACGCCGGCTGCACCGCTGGAGATCACCCG
GCTCGACGCGGCGAACCAGCCGCACCCCCTGCTCGACAGCACCGGCACCG
TGCCCTTCAGCCCGAGCGGTTGGTTCGCGAGCATGATCCAACACATGGAG
TACCACGCTCCGACCAACTCGCTCGTGATCGGGACCGGCTCGAACCAGGG
CATCTGCCCGGGCGGCTCCAACCAGGACTTCAACATTCGCCGCCTGGACC
TGTCGGCCGACTTCGAGCCCGGCGATCTCTACCTCTACACGCCGGCCTTC
CAGGGCGGCAGCTCCTCGGCCGGGGCGATCGTCCGGGTCGATCCGGGCGG
CGGCTCGCCGGAGCTGTTCGTGGACCTCGCCACTGCGTCGAACAGCAAGG
ACCAGATCGCCTACGACCCCTTCCGCGACCGCCTGATCTTCTACGGTGGC
TTCGTGCCGAACCAGATCGCGCTCCACCTCGTCGACGCGAACGGCAACCT
CACGAACATCGGCTTCGACAGCGCCGCGGGCGCCAGCACCTCGGCCTTCG
CGCCGCGCGGCGACGGCAACATCTACATGCGCACGCCGGCTGCACCGCTG
GAGATCACCCGGCTCGACGCGGCGAACCAGCCGCACCCCCTGCTCGACAG
CACCGGCACCGTGCCCTTCAGCCCGAGCGGTTGGTTCGCGAGCATGATCC
AACACATGGAGTACCACGCTCCGACCAACTCGCTCGTGATCGGGACCGGC
TCGAACCAGGGCATCTGCCCGGGCGGCTCCAACCAGGACTTCAACATTCG
CCGCCTGGACCTGTCGGCCGAC
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