mRNA_M-pyrifera_M_contig87634.20352.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87634.20352.1
Unique NamemRNA_M-pyrifera_M_contig87634.20352.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87634.20352.1 vs. uniprot
Match: D8LMU3_ECTSI (Hydrolase_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMU3_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 1.410e-43
Identity = 77/86 (89.53%), Postives = 81/86 (94.19%), Query Frame = 1
Query:    1 QVNVPGFLVNGALRMLRHSVKKQTRCDLKTVAPIARAEQIRCPSLFIAARKDVMVRPSHGADLSEKVGGASLFVTCRGTHNTSRPG 258
            QVNVPGFLVNGAL MLRHSVKK+TRCDLKTVAPIARA  IRCP LFIAARKDVMVRPSHGADLSE VGGASLFVTC+G+HNT+RPG
Sbjct:  423 QVNVPGFLVNGALGMLRHSVKKRTRCDLKTVAPIARARHIRCPCLFIAARKDVMVRPSHGADLSEAVGGASLFVTCKGSHNTARPG 508          
BLAST of mRNA_M-pyrifera_M_contig87634.20352.1 vs. uniprot
Match: A0A6H5JRH5_9PHAE (Hydrolase_4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH5_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 5.170e-41
Identity = 72/85 (84.71%), Postives = 77/85 (90.59%), Query Frame = 1
Query:    4 VNVPGFLVNGALRMLRHSVKKQTRCDLKTVAPIARAEQIRCPSLFIAARKDVMVRPSHGADLSEKVGGASLFVTCRGTHNTSRPG 258
            VNVPGFLVNGAL MLRHSVKK+TRCDLKTVAPI RA  IRCP LFIA RKDVMVRPSHG DLSE VGGASLF+TC+G+HNT+RPG
Sbjct:  474 VNVPGFLVNGALGMLRHSVKKRTRCDLKTVAPITRARHIRCPCLFIAGRKDVMVRPSHGEDLSEAVGGASLFITCKGSHNTARPG 558          
BLAST of mRNA_M-pyrifera_M_contig87634.20352.1 vs. uniprot
Match: A0A7S4ME46_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4ME46_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 9.280e-14
Identity = 33/84 (39.29%), Postives = 51/84 (60.71%), Query Frame = 1
Query:    4 VNVPGFLVNGALRMLRHSVKKQTRCDLKTVAPIARAEQIRCPSLFIAARKDVMVRPSHGADLSEKVGGASLFVTCRGTHNTSRP 255
            +NVP F+ N A+RM+R SVKKQ   D++T++PI+ A +   P+LF+A   D  +  SHG ++ +   G    +   G HN+ RP
Sbjct:  192 INVPNFVTNVAIRMIRGSVKKQADFDIRTISPISHAPRCFIPALFVAGEHDDFIDKSHGQNIHDAYAGDKNMIVVEGDHNSPRP 275          
BLAST of mRNA_M-pyrifera_M_contig87634.20352.1 vs. uniprot
Match: A0A077ZQS0_STYLE (Hydrolase_4 domain-containing protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A077ZQS0_STYLE)

HSP 1 Score: 63.5 bits (153), Expect = 8.440e-10
Identity = 29/82 (35.37%), Postives = 46/82 (56.10%), Query Frame = 1
Query:   10 VPGFLVNGALRMLRHSVKKQTRCDLKTVAPIARAEQIRCPSLFIAARKDVMVRPSHGADLSEKVGGASLFVTCRGTHNTSRP 255
            +P FLV+GAL++++ +VK + + DL  ++PI    +   P++F  A  D  ++P H  DL  K  G    V   G HN+ RP
Sbjct:  190 IPSFLVSGALKIVKSTVKSKAKFDLDDLSPIDHVSECFIPAMFACANGDDFIQPHHTQDLFNKYAGDKNIVKFEGDHNSMRP 271          
BLAST of mRNA_M-pyrifera_M_contig87634.20352.1 vs. uniprot
Match: F0VJ54_NEOCL (Alpha/beta hydrolase, related n=2 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=F0VJ54_NEOCL)

HSP 1 Score: 59.7 bits (143), Expect = 1.890e-8
Identity = 29/82 (35.37%), Postives = 43/82 (52.44%), Query Frame = 1
Query:   10 VPGFLVNGALRMLRHSVKKQTRCDLKTVAPIARAEQIRCPSLFIAARKDVMVRPSHGADLSEKVGGASLFVTCRGTHNTSRP 255
            +P  ++N  L M+R ++  +   D+  +API   E    P+LFI A+ D  + PSHG DL  K  G    +   G HN+ RP
Sbjct:  198 LPRLVLNSLLAMVRTTIINKASFDINNLAPIDHVEHTFIPALFIVAKDDTFILPSHGEDLYAKYAGDRNILHVDGDHNSVRP 279          
BLAST of mRNA_M-pyrifera_M_contig87634.20352.1 vs. uniprot
Match: A0A2C6KZH5_9APIC (Protein c14orf29 n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6KZH5_9APIC)

HSP 1 Score: 58.2 bits (139), Expect = 6.610e-8
Identity = 28/82 (34.15%), Postives = 44/82 (53.66%), Query Frame = 1
Query:   10 VPGFLVNGALRMLRHSVKKQTRCDLKTVAPIARAEQIRCPSLFIAARKDVMVRPSHGADLSEKVGGASLFVTCRGTHNTSRP 255
            +P F++N  L M+R ++  +   D+  +API        P+LF+ A++D  + PSHG +L  K  G    V   G HN+ RP
Sbjct:  198 LPRFVLNSLLGMVRTTIINKAAFDINNLAPIDHVGHTFIPALFVVAKEDNFILPSHGEELFAKYAGDRNIVHVAGDHNSVRP 279          
BLAST of mRNA_M-pyrifera_M_contig87634.20352.1 vs. uniprot
Match: A0A1R2BB57_9CILI (Hydrolase_4 domain-containing protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BB57_9CILI)

HSP 1 Score: 57.8 bits (138), Expect = 8.280e-8
Identity = 27/84 (32.14%), Postives = 43/84 (51.19%), Query Frame = 1
Query:    4 VNVPGFLVNGALRMLRHSVKKQTRCDLKTVAPIARAEQIRCPSLFIAARKDVMVRPSHGADLSEKVGGASLFVTCRGTHNTSRP 255
            V +PGFL+ GAL+++R S++K+   D+  + PI   ++   P+ F     D  + PSH   + EK  G  +       HN  RP
Sbjct:  190 VKLPGFLLTGALKLIRKSIRKKANFDINELNPIDFVDKCFIPATFTLGVNDTFILPSHSEIMYEKYAGEKILKRVDCDHNEPRP 273          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87634.20352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LMU3_ECTSI1.410e-4389.53Hydrolase_4 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JRH5_9PHAE5.170e-4184.71Hydrolase_4 domain-containing protein n=1 Tax=Ecto... [more]
A0A7S4ME46_9STRA9.280e-1439.29Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A077ZQS0_STYLE8.440e-1035.37Hydrolase_4 domain-containing protein n=1 Tax=Styl... [more]
F0VJ54_NEOCL1.890e-835.37Alpha/beta hydrolase, related n=2 Tax=Neospora can... [more]
A0A2C6KZH5_9APIC6.610e-834.15Protein c14orf29 n=1 Tax=Cystoisospora suis TaxID=... [more]
A0A1R2BB57_9CILI8.280e-832.14Hydrolase_4 domain-containing protein n=2 Tax=Sten... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87634contigM-pyrifera_M_contig87634:530..790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.4
Seed ortholog evalue1.9e-37
Seed eggNOG ortholog2880.D8LMU3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.palmitoyl-(protein) hydrolase activity
EggNOG OGsCOG1073@1,KOG1552@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816785.0977101-CDS-M-pyrifera_M_contig87634:529..7901622816785.0977101-CDS-M-pyrifera_M_contig87634:529..790Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87634 530..790 +
1692278177.0201333-CDS-M-pyrifera_M_contig87634:529..7901692278177.0201333-CDS-M-pyrifera_M_contig87634:529..790Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87634 530..790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87634.20352.1prot_M-pyrifera_M_contig87634.20352.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87634 530..790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87634.20352.1

>prot_M-pyrifera_M_contig87634.20352.1 ID=prot_M-pyrifera_M_contig87634.20352.1|Name=mRNA_M-pyrifera_M_contig87634.20352.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
QVNVPGFLVNGALRMLRHSVKKQTRCDLKTVAPIARAEQIRCPSLFIAAR
KDVMVRPSHGADLSEKVGGASLFVTCRGTHNTSRPG*
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mRNA from alignment at M-pyrifera_M_contig87634:530..790+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87634.20352.1 ID=mRNA_M-pyrifera_M_contig87634.20352.1|Name=mRNA_M-pyrifera_M_contig87634.20352.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=261bp|location=Sequence derived from alignment at M-pyrifera_M_contig87634:530..790+ (Macrocystis pyrifera P11B4 male)
CAGGTCAACGTTCCTGGGTTCCTGGTGAACGGGGCTTTGAGGATGCTCCG ACACAGCGTGAAGAAGCAGACGCGGTGTGACCTGAAGACCGTCGCTCCGA TCGCCAGGGCGGAACAGATACGATGCCCCTCCCTGTTCATCGCGGCTCGG AAGGACGTGATGGTGAGACCCAGCCATGGGGCGGACCTGTCAGAGAAAGT GGGAGGGGCGAGCCTGTTCGTGACGTGCAGGGGGACGCACAACACTTCGC GGCCTGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87634:530..790+

>mRNA_M-pyrifera_M_contig87634.20352.1 ID=mRNA_M-pyrifera_M_contig87634.20352.1|Name=mRNA_M-pyrifera_M_contig87634.20352.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig87634:530..790+ (Macrocystis pyrifera P11B4 male)
CAGGTCAACGTTCCTGGGTTCCTGGTGAACGGGGCTTTGAGGATGCTCCG
ACACAGCGTGAAGAAGCAGACGCGGTGTGACCTGAAGACCGTCGCTCCGA
TCGCCAGGGCGGAACAGATACGATGCCCCTCCCTGTTCATCGCGGCTCGG
AAGGACGTGATGGTGAGACCCAGCCATGGGGCGGACCTGTCAGAGAAAGT
GGGAGGGGCGAGCCTGTTCGTGACGTGCAGGGGGACGCACAACACTTCGC
GGCCTGGGTGACAGGTCAACGTTCCTGGGTTCCTGGTGAACGGGGCTTTG
AGGATGCTCCGACACAGCGTGAAGAAGCAGACGCGGTGTGACCTGAAGAC
CGTCGCTCCGATCGCCAGGGCGGAACAGATACGATGCCCCTCCCTGTTCA
TCGCGGCTCGGAAGGACGTGATGGTGAGACCCAGCCATGGGGCGGACCTG
TCAGAGAAAGTGGGAGGGGCGAGCCTGTTCGTGACGTGCAGGGGGACGCA
CAACACTTCGCGGCCTGGGTGA
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