mRNA_M-pyrifera_M_contig87624.20351.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87624.20351.1
Unique NamemRNA_M-pyrifera_M_contig87624.20351.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig87624.20351.1 vs. uniprot
Match: D8LEM9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEM9_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.270e-19
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 NAFLPLLFQSPFLNGVPLRYAVSAGWLRGVCFDLSNKTYNLVVRVPPERREDPPEGAGPHPP 186
            +AF     +SPFL+G PLRYAVSAGWL+GVC+DL+NK +NL VRVP  RREDPP+GA   PP
Sbjct:  157 HAFQQRFGKSPFLDGTPLRYAVSAGWLKGVCYDLTNKCFNLTVRVPAGRREDPPDGAPTFPP 218
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87624.20351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEM9_ECTSI1.270e-1966.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87624contigM-pyrifera_M_contig87624:500..685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816785.0662537-CDS-M-pyrifera_M_contig87624:499..6851622816785.0662537-CDS-M-pyrifera_M_contig87624:499..685Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87624 500..685 +
1692278177.0068753-CDS-M-pyrifera_M_contig87624:499..6851692278177.0068753-CDS-M-pyrifera_M_contig87624:499..685Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87624 500..685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87624.20351.1prot_M-pyrifera_M_contig87624.20351.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87624 500..685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87624.20351.1

>prot_M-pyrifera_M_contig87624.20351.1 ID=prot_M-pyrifera_M_contig87624.20351.1|Name=mRNA_M-pyrifera_M_contig87624.20351.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
NAFLPLLFQSPFLNGVPLRYAVSAGWLRGVCFDLSNKTYNLVVRVPPERR
EDPPEGAGPHPP
back to top

mRNA from alignment at M-pyrifera_M_contig87624:500..685+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87624.20351.1 ID=mRNA_M-pyrifera_M_contig87624.20351.1|Name=mRNA_M-pyrifera_M_contig87624.20351.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=186bp|location=Sequence derived from alignment at M-pyrifera_M_contig87624:500..685+ (Macrocystis pyrifera P11B4 male)
AACGCGTTTTTGCCGTTGTTGTTTCAGTCACCATTCTTGAACGGCGTTCC
GCTACGGTACGCCGTTTCCGCCGGGTGGCTCCGGGGTGTCTGTTTCGACC
TTTCGAACAAGACCTACAACCTCGTCGTCAGAGTCCCTCCTGAGAGGAGA
GAGGACCCCCCCGAGGGGGCCGGCCCTCATCCTCCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig87624:500..685+

>mRNA_M-pyrifera_M_contig87624.20351.1 ID=mRNA_M-pyrifera_M_contig87624.20351.1|Name=mRNA_M-pyrifera_M_contig87624.20351.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig87624:500..685+ (Macrocystis pyrifera P11B4 male)
AACGCGTTTTTGCCGTTGTTGTTTCAGTCACCATTCTTGAACGGCGTTCC
GCTACGGTACGCCGTTTCCGCCGGGTGGCTCCGGGGTGTCTGTTTCGACC
TTTCGAACAAGACCTACAACCTCGTCGTCAGAGTCCCTCCTGAGAGGAGA
GAGGACCCCCCCGAGGGGGCCGGCCCTCATCCTCCCAACGCGTTTTTGCC
GTTGTTGTTTCAGTCACCATTCTTGAACGGCGTTCCGCTACGGTACGCCG
TTTCCGCCGGGTGGCTCCGGGGTGTCTGTTTCGACCTTTCGAACAAGACC
TACAACCTCGTCGTCAGAGTCCCTCCTGAGAGGAGAGAGGACCCCCCCGA
GGGGGCCGGCCCTCATCCTCCC
back to top