mRNA_M-pyrifera_M_contig87598.20347.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87598.20347.1
Unique NamemRNA_M-pyrifera_M_contig87598.20347.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87598.20347.1 vs. uniprot
Match: A0A6I6A7S1_9PLAN (DUF1592 domain-containing protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A6I6A7S1_9PLAN)

HSP 1 Score: 289 bits (740), Expect = 5.030e-90
Identity = 147/164 (89.63%), Postives = 151/164 (92.07%), Query Frame = 1
Query:    1 MRSTLKAVVVVFCLYELSGGGSLQAAEGSRVARDLQVLYTFEAGQGDLIQDRSEVGEPLDLNIKNPSEIKWQEGALTVKGSTRIQSAEPASKLIKALRRANACTMEVWLKPAHDRQKGPARIVSLSRDPNLRNVTLGQEGRRYDVRLRTTSTSGNGMPSMTSPD 492
            MRSTL  VVV+ CL  LS    LQAAEGSRV RDLQVLYTFEAGQG+LIQDRSEVGEPL+LNIKNPSEIKWQ GA+TVKGS RIQS EPASKLIKALRRANACTMEVWLKPAHDRQKGPARIVSLSRDPNLRNVTLGQEGRRYDVRLRTTSTSGNGMPSMTSPD
Sbjct:    4 MRSTLNTVVVLLCLALLSVESRLQAAEGSRVTRDLQVLYTFEAGQGNLIQDRSEVGEPLNLNIKNPSEIKWQNGAVTVKGSARIQSTEPASKLIKALRRANACTMEVWLKPAHDRQKGPARIVSLSRDPNLRNVTLGQEGRRYDVRLRTTSTSGNGMPSMTSPD 167          
BLAST of mRNA_M-pyrifera_M_contig87598.20347.1 vs. uniprot
Match: A0A812QXD2_SYMMI (NolG protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812QXD2_SYMMI)

HSP 1 Score: 260 bits (665), Expect = 1.790e-77
Identity = 129/140 (92.14%), Postives = 133/140 (95.00%), Query Frame = 1
Query:   73 AAEGSRVARDLQVLYTFEAGQGDLIQDRSEVGEPLDLNIKNPSEIKWQEGALTVKGSTRIQSAEPASKLIKALRRANACTMEVWLKPAHDRQKGPARIVSLSRDPNLRNVTLGQEGRRYDVRLRTTSTSGNGMPSMTSPD 492
            AAEGSRV RDLQVLYTFEAGQGDLIQDRSEVGEPL+L IKNPSEIKWQ GA+T+KGS  IQSAEPASKLIKALRRANACTME WLKPAHDRQKGPARIVSLSRDPN RN+TLGQEGRRYDVRLRTTSTSGNGMPSMTSPD
Sbjct: 1087 AAEGSRVTRDLQVLYTFEAGQGDLIQDRSEVGEPLNLKIKNPSEIKWQNGAVTIKGSAWIQSAEPASKLIKALRRANACTMEAWLKPAHDRQKGPARIVSLSRDPNQRNLTLGQEGRRYDVRLRTTSTSGNGMPSMTSPD 1226          
BLAST of mRNA_M-pyrifera_M_contig87598.20347.1 vs. uniprot
Match: A0A517ZZI5_9PLAN (Planctomycete cytochrome C n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517ZZI5_9PLAN)

HSP 1 Score: 226 bits (577), Expect = 1.600e-66
Identity = 112/164 (68.29%), Postives = 132/164 (80.49%), Query Frame = 1
Query:    1 MRSTLKAVVVVFCLYELSGGGSLQAAEGSRVARDLQVLYTFEAGQGDLIQDRSEVGEPLDLNIKNPSEIKWQEGALTVKGSTRIQSAEPASKLIKALRRANACTMEVWLKPAHDRQKGPARIVSLSRDPNLRNVTLGQEGRRYDVRLRTTSTSGNGMPSMTSPD 492
            M S  K    V     L   GSL AAEG+RV RDLQVLYTF AG+GDLI+DRS VG+PL+L IKN S +KWQ G L+V+GS RIQS EPA+K+IK+L+R NACT+E WLKPA+DRQ GPARI+SLS +P+ RN TLGQ+GRRYDVRLRTTSTSGNG+PS+TSPD
Sbjct:    1 MHSIRKEAFFVCWSLTLLSTGSLHAAEGARVTRDLQVLYTFAAGKGDLIRDRSNVGQPLNLKIKNKSSVKWQNGTLSVQGSARIQSLEPATKIIKSLKRTNACTLEAWLKPANDRQTGPARILSLSDNPSRRNFTLGQDGRRYDVRLRTTSTSGNGIPSLTSPD 164          
BLAST of mRNA_M-pyrifera_M_contig87598.20347.1 vs. uniprot
Match: A0A518A422_9PLAN (Planctomycete cytochrome C n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A422_9PLAN)

HSP 1 Score: 216 bits (551), Expect = 7.820e-63
Identity = 104/157 (66.24%), Postives = 132/157 (84.08%), Query Frame = 1
Query:   22 VVVVFCLYELSGGGSLQAAEGSRVARDLQVLYTFEAGQGDLIQDRSEVGEPLDLNIKNPSEIKWQEGALTVKGSTRIQSAEPASKLIKALRRANACTMEVWLKPAHDRQKGPARIVSLSRDPNLRNVTLGQEGRRYDVRLRTTSTSGNGMPSMTSPD 492
            VV++FC+  +   G L+A +GSRV RDLQVLYTFEAG+GDLI+DRS VG+PL+L I++ S I+WQ G L+V+GS RIQSAEPA+K+ K+L+R NACT+E WLKPA+DRQ+GPARI+SLS +P+ RN TLGQ+GRRYDVRLRTTSTS NG PS+ + D
Sbjct:    7 VVLLFCVSSMLWTGGLRAGDGSRVTRDLQVLYTFEAGKGDLIRDRSGVGQPLNLKIQSKSGIQWQSGVLSVQGSARIQSAEPATKIFKSLKRTNACTLEAWLKPANDRQQGPARILSLSDNPSRRNFTLGQDGRRYDVRLRTTSTSANGTPSVPTRD 163          
BLAST of mRNA_M-pyrifera_M_contig87598.20347.1 vs. uniprot
Match: A0A2E8D811_9PLAN (Cytochrome c domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8D811_9PLAN)

HSP 1 Score: 195 bits (495), Expect = 1.230e-54
Identity = 93/156 (59.62%), Postives = 119/156 (76.28%), Query Frame = 1
Query:   22 VVVVFCLYELSGGGSLQAAEGSRVARDLQVLYTFEAGQGDLIQDRSEVGEPLDLNIKNPSEIKWQEGALTVKGSTRIQSAEPASKLIKALRRANACTMEVWLKPAHDRQKGPARIVSLSRDPNLRNVTLGQEGRRYDVRLRTTSTSGNGMPSMTSP 489
            V+V  C + L      QAA+  RV RDLQ LYTFEAG+GD++QDRS  G  LDL I+  S ++W++GAL V+ STRI SA PA K++ A++R+NA T+E W+KP  DRQ GPARIVSLS DPNLRN TLGQ+G+RY+VRLRTTSTS NG+P++ +P
Sbjct:   56 VLVAACTFSLLSTAQSQAADSPRVTRDLQALYTFEAGRGDIVQDRSGAGPQLDLKIEKVSGVQWRDGALVVRSSTRISSAGPAKKIMDAVQRSNAVTIEAWIKPISDRQNGPARIVSLSADPNLRNFTLGQDGKRYEVRLRTTSTSANGIPAIPAP 211          
BLAST of mRNA_M-pyrifera_M_contig87598.20347.1 vs. uniprot
Match: A0A518IAA3_9PLAN (Planctomycete cytochrome C n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518IAA3_9PLAN)

HSP 1 Score: 192 bits (489), Expect = 5.040e-54
Identity = 93/156 (59.62%), Postives = 124/156 (79.49%), Query Frame = 1
Query:   25 VVVFCLYELSGGGSLQAAEGSRVARDLQVLYTFEAGQGDLIQDRSEVGEPLDLNIKNPSEIKWQEGALTVKGSTRIQSAEPASKLIKALRRANACTMEVWLKPAHDRQKGPARIVSLSRDPNLRNVTLGQEGRRYDVRLRTTSTSGNGMPSMTSPD 492
            ++VF L+     GSL AA   RV+RDLQVLYTF+AG+GD+++DRS VG+PLDL I+ P+ + W+ GAL V+ ST+I S  PA K+I +++RAN  T+E W+KPA+DRQKGPARI+SLS +P+ RN+TLGQEG++Y+VRLRTTSTS NG PS  +PD
Sbjct:   55 ILVFLLFLCVSPGSLDAAT-PRVSRDLQVLYTFDAGKGDVVRDRSSVGQPLDLKIEKPAAVHWKNGALVVRKSTKISSMGPARKIINSIKRANGLTVEAWIKPANDRQKGPARIISLSGNPSKRNLTLGQEGKQYNVRLRTTSTSVNGNPSTATPD 209          
BLAST of mRNA_M-pyrifera_M_contig87598.20347.1 vs. uniprot
Match: A0A517VZM0_9PLAN (Planctomycete cytochrome C n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VZM0_9PLAN)

HSP 1 Score: 173 bits (438), Expect = 4.610e-47
Identity = 90/160 (56.25%), Postives = 121/160 (75.62%), Query Frame = 1
Query:    4 RSTLKAVVVVFCLYE--LSGGGSLQAAEGSRVARDLQVLYTFEAGQGDLIQDRSEVGEPLDLNIKNPSEIKWQEGALTVKGSTRIQSAEPASKLIKALRRANACTMEVWLKPAHDRQKGPARIVSLSRDPNLRNVTLGQEGRRYDVRLRTTSTSGNGMPS 477
            R++L + V+ F L     S  GSL+AA   RVAR LQVLYTF+A QGD+IQDRS VG+ L+L I+ PS I+W+ G L V+  T I+   PA K+I A++R+N+ T+E W+KPA+D+QKGPARIVS+S + + RN+TLGQE +++DVRLRTTSTS NG+PS
Sbjct:   12 RASLLSQVIFFSLLLTLFSSFGSLEAAV-PRVARGLQVLYTFDAAQGDIIQDRSGVGQALNLKIEKPSAIQWRNGVLVVRSPTIIKPFVPAKKIINAVKRSNSLTVEAWVKPANDQQKGPARIVSISSNSSQRNMTLGQEAKKFDVRLRTTSTSTNGLPS 170          
BLAST of mRNA_M-pyrifera_M_contig87598.20347.1 vs. uniprot
Match: A0A517ZHN7_9PLAN (Planctomycete cytochrome C n=3 Tax=Symmachiella TaxID=2795780 RepID=A0A517ZHN7_9PLAN)

HSP 1 Score: 158 bits (400), Expect = 6.850e-42
Identity = 76/138 (55.07%), Postives = 100/138 (72.46%), Query Frame = 1
Query:   64 SLQAAEGSRVARDLQVLYTFEAGQGDLIQDRSEVGEPLDLNIKNPSEIKWQEGALTVKGSTRIQSAEPASKLIKALRRANACTMEVWLKPAHDRQKGPARIVSLSRDPNLRNVTLGQEGRRYDVRLRTTSTSGNGMPS 477
            S  A +  RV RDL+ LYTF AG+GD++ D+S V   LDL I+    +KW+   L ++ +T+I+S  PA KLI  ++R    T+E W+ PA+DRQ GPARIVSLS +P+ RNVTLGQ+G+RYDVRLRTT+TSGNG PS
Sbjct:   33 SSAAEQRERVKRDLRALYTFSAGKGDVVHDQSGVRPQLDLRIEKLPAVKWKSDGLLIRSATKIRSIAPAKKLIATVKRTGEVTVEAWIVPANDRQSGPARIVSLSANPSGRNVTLGQDGKRYDVRLRTTATSGNGQPS 170          
BLAST of mRNA_M-pyrifera_M_contig87598.20347.1 vs. uniprot
Match: A0A1P8WEV3_9PLAN (Planctomycete cytochrome C n=1 Tax=Fuerstiella marisgermanici TaxID=1891926 RepID=A0A1P8WEV3_9PLAN)

HSP 1 Score: 158 bits (399), Expect = 1.040e-41
Identity = 77/158 (48.73%), Postives = 108/158 (68.35%), Query Frame = 1
Query:   16 KAVVVVFCLYELSGGGSLQAAEGSRVARDLQVLYTFEAGQGDLIQDRSEVGEPLDLNIKNPSEIKWQEGALTVKGSTRIQSAEPASKLIKALRRANACTMEVWLKPAHDRQKGPARIVSLSRDPNLRNVTLGQEGRRYDVRLRTTSTSGNGMPSMTSP 489
            +A+ +V     L  G +   A   R+ RDLQVLYTFEAG+GD+++DRS VG+ LDL I + S ++W +G L +K +T I S  PA K+I A++R+NA ++E W+KP   +Q GPAR+V+LS + N RN T+GQ+   YD RLRT+STS NG+PS   P
Sbjct:   15 RAISMVLTALFLVAGLATAGAASPRIHRDLQVLYTFEAGEGDVVRDRSGVGQALDLKIGDSSAVQWSDGTLNIKAATIIASDGPAKKVIDAVKRSNAISVEAWVKPHDAKQNGPARLVTLSENSNHRNFTVGQDANTYDFRLRTSSTSSNGLPSAALP 172          
BLAST of mRNA_M-pyrifera_M_contig87598.20347.1 vs. uniprot
Match: A0A517VF79_9PLAN (Planctomycete cytochrome C n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VF79_9PLAN)

HSP 1 Score: 157 bits (398), Expect = 1.280e-41
Identity = 74/148 (50.00%), Postives = 111/148 (75.00%), Query Frame = 1
Query:   49 LSGGGSLQAAEGSRVARDLQVLYTFEAGQGDLIQDRSEVGEPLDLNIKNPSEIKWQEGALTVKGSTRIQSAEPASKLIKALRRANACTMEVWLKPAHDRQKGPARIVSLSRDPNLRNVTLGQEGRRYDVRLRTTSTSGNGMPSMTSPD 492
            L+G   + +A   RV+RDLQV YTF+  QG  I+DRS +G+PLDL I +PS ++W+   L V+   +I S+ PA+K I A++R+N+ T+E W+ PA+ RQ+GPARI+SLS++ +LRN TLGQ+ ++Y++RLR+TSTS NG+PS ++ D
Sbjct:   21 LTGISEVFSAAAPRVSRDLQVFYTFDQTQGTSIKDRSGIGQPLDLKIDHPSAVEWKNDGLLVRNPAKIISSTPATKFISAIQRSNSLTVEAWITPANLRQQGPARIISLSKNSSLRNFTLGQDQQKYEMRLRSTSTSSNGIPSTSTAD 168          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87598.20347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6I6A7S1_9PLAN5.030e-9089.63DUF1592 domain-containing protein n=6 Tax=Gimesia ... [more]
A0A812QXD2_SYMMI1.790e-7792.14NolG protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A517ZZI5_9PLAN1.600e-6668.29Planctomycete cytochrome C n=1 Tax=Gimesia panaree... [more]
A0A518A422_9PLAN7.820e-6366.24Planctomycete cytochrome C n=3 Tax=Gimesia panaree... [more]
A0A2E8D811_9PLAN1.230e-5459.62Cytochrome c domain-containing protein n=1 Tax=Pla... [more]
A0A518IAA3_9PLAN5.040e-5459.62Planctomycete cytochrome C n=2 Tax=Gimesia TaxID=1... [more]
A0A517VZM0_9PLAN4.610e-4756.25Planctomycete cytochrome C n=2 Tax=Gimesia aquarii... [more]
A0A517ZHN7_9PLAN6.850e-4255.07Planctomycete cytochrome C n=3 Tax=Symmachiella Ta... [more]
A0A1P8WEV3_9PLAN1.040e-4148.73Planctomycete cytochrome C n=1 Tax=Fuerstiella mar... [more]
A0A517VF79_9PLAN1.280e-4150.00Planctomycete cytochrome C n=1 Tax=Gimesia algae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87598contigM-pyrifera_M_contig87598:340..831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score147.9
Seed ortholog evalue4.1e-33
Seed eggNOG ortholog243090.RB6432
KEGG koko:K10804
KEGG Pathwayko01040,map01040
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Belongs to the glycosyl hydrolase family 6
EggNOG OGsCOG2010@1,COG2010@2,COG2755@1,COG2755@2,COG5297@1,COG5297@2
EC3.1.1.5
COG Functional cat.G
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004
Exons1
Model size492
Cds size492
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816784.7555645-CDS-M-pyrifera_M_contig87598:339..8311622816784.7555645-CDS-M-pyrifera_M_contig87598:339..831Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87598 340..831 +
1692278176.8009133-CDS-M-pyrifera_M_contig87598:339..8311692278176.8009133-CDS-M-pyrifera_M_contig87598:339..831Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87598 340..831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87598.20347.1prot_M-pyrifera_M_contig87598.20347.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87598 340..831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87598.20347.1

>prot_M-pyrifera_M_contig87598.20347.1 ID=prot_M-pyrifera_M_contig87598.20347.1|Name=mRNA_M-pyrifera_M_contig87598.20347.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=164bp
MRSTLKAVVVVFCLYELSGGGSLQAAEGSRVARDLQVLYTFEAGQGDLIQ
DRSEVGEPLDLNIKNPSEIKWQEGALTVKGSTRIQSAEPASKLIKALRRA
NACTMEVWLKPAHDRQKGPARIVSLSRDPNLRNVTLGQEGRRYDVRLRTT
STSGNGMPSMTSPD
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mRNA from alignment at M-pyrifera_M_contig87598:340..831+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87598.20347.1 ID=mRNA_M-pyrifera_M_contig87598.20347.1|Name=mRNA_M-pyrifera_M_contig87598.20347.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig87598:340..831+ (Macrocystis pyrifera P11B4 male)
ATGCGCTCTACTCTGAAAGCGGTTGTAGTGGTGTTCTGTCTGTATGAGCT GTCTGGCGGTGGCTCTCTGCAGGCTGCGGAGGGCTCGCGGGTGGCCCGTG ATCTGCAGGTTTTGTACACGTTTGAAGCAGGCCAGGGGGATCTGATTCAG GATCGCTCGGAGGTCGGGGAACCTCTGGATCTGAACATTAAGAATCCGTC AGAGATCAAGTGGCAGGAGGGGGCTTTGACCGTCAAGGGGTCGACCCGGA TTCAGTCAGCAGAGCCGGCCAGTAAACTCATTAAAGCACTTCGGCGGGCG AATGCATGTACCATGGAAGTCTGGTTGAAACCGGCCCATGATCGGCAGAA GGGACCCGCGCGGATTGTTTCGTTGTCGCGTGATCCGAATCTGCGTAATG TGACGCTGGGGCAGGAGGGCAGGCGCTATGATGTGCGTTTGCGGACGACG TCCACCAGCGGGAACGGTATGCCTTCCATGACGTCTCCGGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87598:340..831+

>mRNA_M-pyrifera_M_contig87598.20347.1 ID=mRNA_M-pyrifera_M_contig87598.20347.1|Name=mRNA_M-pyrifera_M_contig87598.20347.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=984bp|location=Sequence derived from alignment at M-pyrifera_M_contig87598:340..831+ (Macrocystis pyrifera P11B4 male)
ATGCGCTCTACTCTGAAAGCGGTTGTAGTGGTGTTCTGTCTGTATGAGCT
GTCTGGCGGTGGCTCTCTGCAGGCTGCGGAGGGCTCGCGGGTGGCCCGTG
ATCTGCAGGTTTTGTACACGTTTGAAGCAGGCCAGGGGGATCTGATTCAG
GATCGCTCGGAGGTCGGGGAACCTCTGGATCTGAACATTAAGAATCCGTC
AGAGATCAAGTGGCAGGAGGGGGCTTTGACCGTCAAGGGGTCGACCCGGA
TTCAGTCAGCAGAGCCGGCCAGTAAACTCATTAAAGCACTTCGGCGGGCG
AATGCATGTACCATGGAAGTCTGGTTGAAACCGGCCCATGATCGGCAGAA
GGGACCCGCGCGGATTGTTTCGTTGTCGCGTGATCCGAATCTGCGTAATG
TGACGCTGGGGCAGGAGGGCAGGCGCTATGATGTGCGTTTGCGGACGACG
TCCACCAGCGGGAACGGTATGCCTTCCATGACGTCTCCGGATATGCGCTC
TACTCTGAAAGCGGTTGTAGTGGTGTTCTGTCTGTATGAGCTGTCTGGCG
GTGGCTCTCTGCAGGCTGCGGAGGGCTCGCGGGTGGCCCGTGATCTGCAG
GTTTTGTACACGTTTGAAGCAGGCCAGGGGGATCTGATTCAGGATCGCTC
GGAGGTCGGGGAACCTCTGGATCTGAACATTAAGAATCCGTCAGAGATCA
AGTGGCAGGAGGGGGCTTTGACCGTCAAGGGGTCGACCCGGATTCAGTCA
GCAGAGCCGGCCAGTAAACTCATTAAAGCACTTCGGCGGGCGAATGCATG
TACCATGGAAGTCTGGTTGAAACCGGCCCATGATCGGCAGAAGGGACCCG
CGCGGATTGTTTCGTTGTCGCGTGATCCGAATCTGCGTAATGTGACGCTG
GGGCAGGAGGGCAGGCGCTATGATGTGCGTTTGCGGACGACGTCCACCAG
CGGGAACGGTATGCCTTCCATGACGTCTCCGGAT
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