mRNA_M-pyrifera_M_contig87583.20341.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87583.20341.1
Unique NamemRNA_M-pyrifera_M_contig87583.20341.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87583.20341.1 vs. uniprot
Match: A0A7C3ABE1_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C3ABE1_9BACT)

HSP 1 Score: 72.8 bits (177), Expect = 9.220e-15
Identity = 31/54 (57.41%), Postives = 44/54 (81.48%), Query Frame = 1
Query:    1 MSLSAHEMRQLYRSTVIVRKPTYGIVRGSHDLPYICLGPSITDGHETSKVIGKV 162
            MS+S  EMR++++ T IVR+PTYGIVRG H+LPYICLG S+  G+ +++V G+V
Sbjct:    1 MSISPEEMREIFQHTTIVRRPTYGIVRGYHELPYICLGASLESGYASTRVRGRV 54          
BLAST of mRNA_M-pyrifera_M_contig87583.20341.1 vs. uniprot
Match: A0A7C8ALZ3_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C8ALZ3_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 2.050e-13
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 1
Query:    1 MSLSAHEMRQLYRSTVIVRKPTYGIVRGSHDLPYICLGPSITDGHETSKVIGKVH 165
            M+LS+ EMR+++  T I+R+PTYGI+ G H+LPY+CLG S     +T++V GKVH
Sbjct:    1 MALSSDEMREIFERTEILRRPTYGIISGYHELPYVCLGASFEPDRQTTEVRGKVH 55          
BLAST of mRNA_M-pyrifera_M_contig87583.20341.1 vs. uniprot
Match: A0A7Y5F7H8_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5F7H8_9BACT)

HSP 1 Score: 65.1 bits (157), Expect = 8.860e-12
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    7 LSAHEMRQLYRSTVIVRKPTYGIVRGSHDLPYICLGPSITDGHETSKVIGKVH 165
            LS+ E+R+++R T IVRKPTYGI+ G H LPY+CLG S      T++V GKVH
Sbjct:    2 LSSDELREIFRRTQIVRKPTYGIISGYHTLPYVCLGVSEDKPFGTTQVKGKVH 54          
BLAST of mRNA_M-pyrifera_M_contig87583.20341.1 vs. uniprot
Match: A0A1V5YZV4_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium ADurb.Bin170 TaxID=1852848 RepID=A0A1V5YZV4_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 1.760e-11
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    1 MSLSAHEMRQLYRSTVIVRKPTYGIVRGSHDLPYICLGPSITDGHETSKVIGKVH 165
            MSLS  EMR +Y  T I+R+PTYGIV+G H+LPYICLG  +     +  V G++H
Sbjct:    1 MSLSFDEMRDIYNRTRIIRRPTYGIVKGYHELPYICLGAGLDGTRGSLYVRGRIH 55          
BLAST of mRNA_M-pyrifera_M_contig87583.20341.1 vs. uniprot
Match: A0A1V5Z8D2_9BACT (Uncharacterized protein n=2 Tax=unclassified Candidatus Hydrogenedentes TaxID=1046981 RepID=A0A1V5Z8D2_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 1.760e-11
Identity = 26/55 (47.27%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    1 MSLSAHEMRQLYRSTVIVRKPTYGIVRGSHDLPYICLGPSITDGHETSKVIGKVH 165
            M LS  EM+ ++  T+IVR+PT+GI++G H+LPYIC+G ++     T +V GK+H
Sbjct:    1 MELSRREMKDIFDRTIIVRRPTHGIIKGYHELPYICVGNALDQQEGTMRVRGKIH 55          
BLAST of mRNA_M-pyrifera_M_contig87583.20341.1 vs. uniprot
Match: A0A7V2Y4E9_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V2Y4E9_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 1.790e-11
Identity = 26/55 (47.27%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    1 MSLSAHEMRQLYRSTVIVRKPTYGIVRGSHDLPYICLGPSITDGHETSKVIGKVH 165
            M  S HEM +++  T I+R+PTYGI+ G H+LPY+CLG +   G  T++V G+V+
Sbjct:    1 MPFSGHEMHEIFSRTEIIRRPTYGIISGYHELPYVCLGDACERGFATTEVRGRVY 55          
BLAST of mRNA_M-pyrifera_M_contig87583.20341.1 vs. uniprot
Match: A0A7C1CL18_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C1CL18_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 4.930e-11
Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    1 MSLSAHEMRQLYRSTVIVRKPTYGIVRGSHDLPYICLGPSITDGHETSKVIGKVH 165
            M+L    MR +Y  T+I+R PTYGI++G H+LPYICLG ++     + +V G++H
Sbjct:    1 MALDKRAMRDIYERTIILRTPTYGIIKGYHELPYICLGEALESASGSMRVRGRIH 55          
BLAST of mRNA_M-pyrifera_M_contig87583.20341.1 vs. uniprot
Match: A0A7C3WZX8_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C3WZX8_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 1.790e-10
Identity = 25/55 (45.45%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    1 MSLSAHEMRQLYRSTVIVRKPTYGIVRGSHDLPYICLGPSITDGHETSKVIGKVH 165
            M+L+  EM +++  TVI++KP YGI++G H+LPYICLG ++   + +  V GK+H
Sbjct:    1 MTLNREEMYRIFAETVIIKKPRYGIIKGYHELPYICLGEALESHYGSLCVRGKIH 55          
BLAST of mRNA_M-pyrifera_M_contig87583.20341.1 vs. uniprot
Match: A0A7C4Z0G1_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C4Z0G1_9BACT)

HSP 1 Score: 58.9 bits (141), Expect = 2.170e-9
Identity = 24/55 (43.64%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    1 MSLSAHEMRQLYRSTVIVRKPTYGIVRGSHDLPYICLGPSITDGHETSKVIGKVH 165
            M+LS  EM +++  T ++R+P YGIV+G H+LPYIC+G  +   + +  V GK+H
Sbjct:    1 MTLSREEMYRIFVETAVIRRPRYGIVKGYHELPYICIGNPLDSQYRSLCVRGKIH 55          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87583.20341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A7C3ABE1_9BACT9.220e-1557.41Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7C8ALZ3_9BACT2.050e-1352.73Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7Y5F7H8_9BACT8.860e-1256.60Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A1V5YZV4_9BACT1.760e-1152.73Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A1V5Z8D2_9BACT1.760e-1147.27Uncharacterized protein n=2 Tax=unclassified Candi... [more]
A0A7V2Y4E9_9BACT1.790e-1147.27Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7C1CL18_9BACT4.930e-1145.45Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7C3WZX8_9BACT1.790e-1045.45Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
A0A7C4Z0G1_9BACT2.170e-943.64Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87583contigM-pyrifera_M_contig87583:667..831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816784.4961596-CDS-M-pyrifera_M_contig87583:666..8311622816784.4961596-CDS-M-pyrifera_M_contig87583:666..831Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87583 667..831 +
1692278176.625672-CDS-M-pyrifera_M_contig87583:666..8311692278176.625672-CDS-M-pyrifera_M_contig87583:666..831Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87583 667..831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87583.20341.1prot_M-pyrifera_M_contig87583.20341.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87583 667..831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87583.20341.1

>prot_M-pyrifera_M_contig87583.20341.1 ID=prot_M-pyrifera_M_contig87583.20341.1|Name=mRNA_M-pyrifera_M_contig87583.20341.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
MSLSAHEMRQLYRSTVIVRKPTYGIVRGSHDLPYICLGPSITDGHETSKV
IGKVH
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mRNA from alignment at M-pyrifera_M_contig87583:667..831+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87583.20341.1 ID=mRNA_M-pyrifera_M_contig87583.20341.1|Name=mRNA_M-pyrifera_M_contig87583.20341.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=165bp|location=Sequence derived from alignment at M-pyrifera_M_contig87583:667..831+ (Macrocystis pyrifera P11B4 male)
ATGAGCCTCAGTGCCCATGAGATGCGGCAGCTTTATCGCAGCACGGTGAT CGTGCGGAAACCCACGTATGGCATCGTGCGGGGTTCCCACGATCTACCCT ATATTTGCCTTGGCCCATCCATCACCGATGGTCATGAAACCTCCAAAGTG ATTGGCAAGGTGCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87583:667..831+

>mRNA_M-pyrifera_M_contig87583.20341.1 ID=mRNA_M-pyrifera_M_contig87583.20341.1|Name=mRNA_M-pyrifera_M_contig87583.20341.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig87583:667..831+ (Macrocystis pyrifera P11B4 male)
ATGAGCCTCAGTGCCCATGAGATGCGGCAGCTTTATCGCAGCACGGTGAT
CGTGCGGAAACCCACGTATGGCATCGTGCGGGGTTCCCACGATCTACCCT
ATATTTGCCTTGGCCCATCCATCACCGATGGTCATGAAACCTCCAAAGTG
ATTGGCAAGGTGCACATGAGCCTCAGTGCCCATGAGATGCGGCAGCTTTA
TCGCAGCACGGTGATCGTGCGGAAACCCACGTATGGCATCGTGCGGGGTT
CCCACGATCTACCCTATATTTGCCTTGGCCCATCCATCACCGATGGTCAT
GAAACCTCCAAAGTGATTGGCAAGGTGCAC
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