mRNA_M-pyrifera_M_contig87580.20340.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87580.20340.1
Unique NamemRNA_M-pyrifera_M_contig87580.20340.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87580.20340.1 vs. uniprot
Match: A0A7S3ZPP2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZPP2_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.020e-20
Identity = 53/108 (49.07%), Postives = 61/108 (56.48%), Query Frame = 1
Query:    1 LLRSDFSQGLPFRDSVFSHAVSVSAIQWL--------TTERARESFFASLWRVLASGGRAALQFYPSGPRDAEKMLQTALKGESHCFAGGLVMDMPHSAPQRKWYLCL 300
            LL  D   GLPFRD  F  AVSVSA+QWL        +  R    FFASL+R L +GGRAALQFYP     A  +   A +     FAGG+V+D P S   RK YLCL
Sbjct:   23 LLEHDMGLGLPFRDGAFDGAVSVSALQWLCYDNDAASSAPRRLNRFFASLYRCLRAGGRAALQFYPENDAQAALIAAAAQRAG---FAGGVVVDFPRSTKARKHYLCL 127          
BLAST of mRNA_M-pyrifera_M_contig87580.20340.1 vs. uniprot
Match: A0A8J2X3T6_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X3T6_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 8.940e-20
Identity = 53/108 (49.07%), Postives = 61/108 (56.48%), Query Frame = 1
Query:    1 LLRSDFSQGLPFRDSVFSHAVSVSAIQWL--------TTERARESFFASLWRVLASGGRAALQFYPSGPRDAEKMLQTALKGESHCFAGGLVMDMPHSAPQRKWYLCL 300
            LL  D   GLPFRD  F  AVSVSA+QWL        +  R    FFASL+R L +GGRAALQFYP     A  +   A +     FAGG+V+D P S   RK YLCL
Sbjct:  142 LLEHDMGLGLPFRDGAFDGAVSVSALQWLCYDNDAASSAPRRLNRFFASLYRCLRAGGRAALQFYPENDAQAALIAAAAQRAG---FAGGVVVDFPRSTKARKHYLCL 246          
BLAST of mRNA_M-pyrifera_M_contig87580.20340.1 vs. uniprot
Match: F0YM09_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YM09_AURAN)

HSP 1 Score: 90.1 bits (222), Expect = 3.510e-19
Identity = 52/108 (48.15%), Postives = 65/108 (60.19%), Query Frame = 1
Query:    1 LLRSDFSQGLPFRDSVFSHAVSVSAIQWLTTER-ARES-------FFASLWRVLASGGRAALQFYPSGPRDAEKMLQTALKGESHCFAGGLVMDMPHSAPQRKWYLCL 300
            L++ D   GLPFRD  F  A+SVSA+QWL  +  +R+S       FFASL+R L SG RAALQFYP     A  +   A +     FAGG+V+D P+S   RK YLCL
Sbjct:  106 LVQHDMGLGLPFRDGTFDGAISVSALQWLCYDNDSRQSATKRLGRFFASLYRCLKSGSRAALQFYPESDAQATLIASAAARAG---FAGGVVVDYPNSTKARKHYLCL 210          
BLAST of mRNA_M-pyrifera_M_contig87580.20340.1 vs. uniprot
Match: A0A1Y1IC86_KLENI (Methyltransferase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IC86_KLENI)

HSP 1 Score: 89.4 bits (220), Expect = 7.580e-19
Identity = 49/108 (45.37%), Postives = 66/108 (61.11%), Query Frame = 1
Query:    1 LLRSDFSQGLPFRDSVFSHAVSVSAIQWL-----TTERARE---SFFASLWRVLASGGRAALQFYPSGPRDAEKMLQTALKGESHCFAGGLVMDMPHSAPQRKWYLCL 300
            ++ SD  QGLP R  VF  A+S+SAIQWL     T    R+   +FF +L+R LA G RA LQFYP GP+  E +   A++     F+GGLV+D PHS   +K++L L
Sbjct:   98 VMLSDIGQGLPLRTGVFDGAISISAIQWLCNADKTANDPRQRLKAFFQTLYRSLARGARAVLQFYPDGPKQVEMISSAAMRVG---FSGGLVVDFPHSTRAKKYFLVL 202          
BLAST of mRNA_M-pyrifera_M_contig87580.20340.1 vs. uniprot
Match: A0A5A8D612_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D612_CAFRO)

HSP 1 Score: 87.8 bits (216), Expect = 4.550e-18
Identity = 50/107 (46.73%), Postives = 63/107 (58.88%), Query Frame = 1
Query:    4 LRSDFSQGLPFRDSVFSHAVSVSAIQWL--TTERARE------SFFASLWRVLASGGRAALQFYPSGPRDAEKMLQTALKGESHCFAGGLVMDMPHSAPQRKWYLCL 300
            L SD  QGLPFR   F  A+SVSA+QWL   T+++ +      +FFASL+R L  G RAALQ YP      E +   A K     F GGLV+D P+S   +K+YLCL
Sbjct:  102 LLSDMGQGLPFRTGSFDGAISVSAVQWLCYATQKSHQPYRRIRAFFASLYRCLKRGARAALQIYPENAAHLEMLSAAAAKAG---FRGGLVVDFPNSTKAKKYYLCL 205          
BLAST of mRNA_M-pyrifera_M_contig87580.20340.1 vs. uniprot
Match: A0A4Y7IS30_PAPSO (Uncharacterized protein n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7IS30_PAPSO)

HSP 1 Score: 83.2 bits (204), Expect = 1.520e-16
Identity = 50/108 (46.30%), Postives = 62/108 (57.41%), Query Frame = 1
Query:    1 LLRSDFSQGLPFRDSVFSHAVSVSAIQWLTTE-------RAR-ESFFASLWRVLASGGRAALQFYPSGPRDAEKMLQTALKGESHCFAGGLVMDMPHSAPQRKWYLCL 300
            LL SD  QGL FRD V   A+S+SA+QWL          R R ++FF SL+R LA G RA  Q YP      E +L  A++     FAGG+V+D PHS+  RK YL L
Sbjct:   97 LLLSDMGQGLGFRDGVIDGAISISAVQWLCNADRSSHNPRLRLKAFFGSLYRCLARGARAVFQVYPESNDQRELILGFAMRAG---FAGGVVVDFPHSSKSRKEYLVL 201          
BLAST of mRNA_M-pyrifera_M_contig87580.20340.1 vs. uniprot
Match: A0A4Y7IP67_PAPSO (Uncharacterized protein n=1 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7IP67_PAPSO)

HSP 1 Score: 83.2 bits (204), Expect = 5.040e-16
Identity = 50/108 (46.30%), Postives = 62/108 (57.41%), Query Frame = 1
Query:    1 LLRSDFSQGLPFRDSVFSHAVSVSAIQWLTTE-------RAR-ESFFASLWRVLASGGRAALQFYPSGPRDAEKMLQTALKGESHCFAGGLVMDMPHSAPQRKWYLCL 300
            LL SD  QGL FRD V   A+S+SA+QWL          R R ++FF SL+R LA G RA  Q YP      E +L  A++     FAGG+V+D PHS+  RK YL L
Sbjct:   97 LLLSDMGQGLGFRDGVIDGAISISAVQWLCNADRSSHNPRLRLKAFFGSLYRCLARGARAVFQVYPESNDQRELILGFAMRAG---FAGGVVVDFPHSSKSRKEYLVL 201          
BLAST of mRNA_M-pyrifera_M_contig87580.20340.1 vs. uniprot
Match: A0A7J7BX17_TRIWF (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein isoform 1 n=2 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7BX17_TRIWF)

HSP 1 Score: 81.6 bits (200), Expect = 5.700e-16
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 1
Query:    1 LLRSDFSQGLPFRDSVFSHAVSVSAIQWLTTE-------RAR-ESFFASLWRVLASGGRAALQFYPSGPRDAEKMLQTALKGESHCFAGGLVMDMPHSAPQRKWYLCL 300
            LL SD  QGLP R  V   A+S+SAIQWL          R R ++FF SL+R LA G +AA Q YP      E +L +A++     FAGG+V+D PHS+  RK ++ L
Sbjct:   98 LLLSDMGQGLPLRTGVIDGAISISAIQWLCNADKSSHEPRLRLKAFFGSLYRCLARGAKAAFQVYPENVAQRELILSSAMRAG---FAGGVVIDYPHSSKMRKEFVVL 202          
BLAST of mRNA_M-pyrifera_M_contig87580.20340.1 vs. uniprot
Match: A0A1U8A7F6_NELNU (probable 18S rRNA (Guanine-N(7))-methyltransferase n=3 Tax=Mesangiospermae TaxID=1437183 RepID=A0A1U8A7F6_NELNU)

HSP 1 Score: 80.9 bits (198), Expect = 1.090e-15
Identity = 49/108 (45.37%), Postives = 62/108 (57.41%), Query Frame = 1
Query:    1 LLRSDFSQGLPFRDSVFSHAVSVSAIQWLTTE-------RAR-ESFFASLWRVLASGGRAALQFYPSGPRDAEKMLQTALKGESHCFAGGLVMDMPHSAPQRKWYLCL 300
            L+ SD  QGL FR  V   A+S+SA+QWL          R R ++FF SL+R LA G RA LQ YP      E +L  A++     FAGG+V+D PHS+  RK YL L
Sbjct:   98 LMLSDMGQGLGFRPGVIDGAISISAVQWLCNADKSSHNPRLRLKAFFGSLYRCLARGARAVLQVYPENLAQRELILGFAMRAG---FAGGVVVDYPHSSKSRKEYLVL 202          
BLAST of mRNA_M-pyrifera_M_contig87580.20340.1 vs. uniprot
Match: A0A6N2K8T8_SALVM (Methyltransf_11 domain-containing protein n=3 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2K8T8_SALVM)

HSP 1 Score: 78.6 bits (192), Expect = 1.250e-15
Identity = 47/108 (43.52%), Postives = 59/108 (54.63%), Query Frame = 1
Query:    1 LLRSDFSQGLPFRDSVFSHAVSVSAIQWLTTE-------RAR-ESFFASLWRVLASGGRAALQFYPSGPRDAEKMLQTALKGESHCFAGGLVMDMPHSAPQRKWYLCL 300
            LL  D  QGL  R  +   A+S+SA+QWL          R R ++FF SL+R LA G RA  Q YP      E +L++A+      FAGG+VMD PHS   RK YL L
Sbjct:   50 LLLGDMGQGLALRPGIIDGAISISAVQWLCNADKSSHEPRLRLKAFFGSLYRCLARGARAVFQVYPENIAQRELILRSAMHAG---FAGGVVMDYPHSTKSRKEYLVL 154          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87580.20340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3ZPP2_9STRA1.020e-2049.07Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A8J2X3T6_9STRA8.940e-2049.07Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
F0YM09_AURAN3.510e-1948.15Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A1Y1IC86_KLENI7.580e-1945.37Methyltransferase n=1 Tax=Klebsormidium nitens Tax... [more]
A0A5A8D612_CAFRO4.550e-1846.73Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A4Y7IS30_PAPSO1.520e-1646.30Uncharacterized protein n=2 Tax=Papaver somniferum... [more]
A0A4Y7IP67_PAPSO5.040e-1646.30Uncharacterized protein n=1 Tax=Papaver somniferum... [more]
A0A7J7BX17_TRIWF5.700e-1644.44S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A1U8A7F6_NELNU1.090e-1545.37probable 18S rRNA (Guanine-N(7))-methyltransferase... [more]
A0A6N2K8T8_SALVM1.250e-1543.52Methyltransf_11 domain-containing protein n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87580contigM-pyrifera_M_contig87580:13..453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue7.5e-17
Seed eggNOG ortholog3075.A0A087SKV3
KEGG koko:K19306
Hectar predicted targeting categoryother localisation
EggNOG free text desc.rRNA (guanine-N7)-methylation
EggNOG OGsCOG0500@1,KOG1541@2759
EC2.1.1.309
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons2
Model size396
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816784.4436946-CDS-M-pyrifera_M_contig87580:12..3491622816784.4436946-CDS-M-pyrifera_M_contig87580:12..349Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87580 13..349 +
1692278176.5985494-CDS-M-pyrifera_M_contig87580:12..3491692278176.5985494-CDS-M-pyrifera_M_contig87580:12..349Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87580 13..349 +
1622816784.4582245-CDS-M-pyrifera_M_contig87580:394..4531622816784.4582245-CDS-M-pyrifera_M_contig87580:394..453Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87580 395..453 +
1692278176.6128888-CDS-M-pyrifera_M_contig87580:394..4531692278176.6128888-CDS-M-pyrifera_M_contig87580:394..453Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87580 395..453 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87580.20340.1prot_M-pyrifera_M_contig87580.20340.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87580 13..453 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87580.20340.1

>prot_M-pyrifera_M_contig87580.20340.1 ID=prot_M-pyrifera_M_contig87580.20340.1|Name=mRNA_M-pyrifera_M_contig87580.20340.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
LLRSDFSQGLPFRDSVFSHAVSVSAIQWLTTERARESFFASLWRVLASGG
RAALQFYPSGPRDAEKMLQTALKGESHCFAGGLVMDMPHSAPQRKWYLCL
RKVECVACKEGLSSLPQCELAFPYRASCALSW
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mRNA from alignment at M-pyrifera_M_contig87580:13..453+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87580.20340.1 ID=mRNA_M-pyrifera_M_contig87580.20340.1|Name=mRNA_M-pyrifera_M_contig87580.20340.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=441bp|location=Sequence derived from alignment at M-pyrifera_M_contig87580:13..453+ (Macrocystis pyrifera P11B4 male)
CTCCTCAGGTCCGACTTCTCGCAGGGCCTCCCGTTCCGAGACTCTGTATT CTCACATGCAGTGAGCGTGAGTGCCATTCAATGGCTCACCACAGAGAGGG CGCGAGAATCCTTCTTCGCCAGCCTCTGGAGGGTGCTCGCGAGCGGGGGG AGGGCAGCGCTGCAGTTCTACCCCTCTGGCCCCCGAGATGCAGAGAAGAT GCTCCAGACTGCTCTCAAGGGGGAGAGCCACTGCTTCGCTGGTGGCCTGG TGATGGACATGCCCCACAGTGCGCCGCAGAGAAAGTGGTACCTCTGCCTG AGGAAGGTGGAGTGCGTGGCCTGCAAGGAGGGCCTCTGTGGCAGCAATGG CTGCACCGACCGCACCGCAACACAAGCAGTAGCCAGTCTGCCTCAGTGCG AGCTGGCTTTCCCCTACAGAGCTTCCTGTGCTCTCTCGTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87580:13..453+

>mRNA_M-pyrifera_M_contig87580.20340.1 ID=mRNA_M-pyrifera_M_contig87580.20340.1|Name=mRNA_M-pyrifera_M_contig87580.20340.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig87580:13..453+ (Macrocystis pyrifera P11B4 male)
CTCCTCAGGTCCGACTTCTCGCAGGGCCTCCCGTTCCGAGACTCTGTATT
CTCACATGCAGTGAGCGTGAGTGCCATTCAATGGCTCACCACAGAGAGGG
CGCGAGAATCCTTCTTCGCCAGCCTCTGGAGGGTGCTCGCGAGCGGGGGG
AGGGCAGCGCTGCAGTTCTACCCCTCTGGCCCCCGAGATGCAGAGAAGAT
GCTCCAGACTGCTCTCAAGGGGGAGAGCCACTGCTTCGCTGGTGGCCTGG
TGATGGACATGCCCCACAGTGCGCCGCAGAGAAAGTGGTACCTCTGCCTG
AGGAAGGTGGAGTGCGTGGCCTGCAAGGAGGGCCTCTCTCCTCAGGTCCG
ACTTCTCGCAGGGCCTCCCGTTCCGAGACTCTGTATTCTCACATGCAGTG
AGCGTGAGTGCCATTCAATGGCTCACCACAGAGAGGGCGCGAGAATCCTT
CTTCGCCAGCCTCTGGAGGGTGCTCGCGAGCGGGGGGAGGGCAGCGCTGC
AGTTCTACCCCTCTGGCCCCCGAGATGCAGAGAAGATGCTCCAGACTGCT
CTCAAGGGGGAGAGCCACTGCTTCGCTGGTGGCCTGGTGATGGACATGCC
CCACAGTGCGCCGCAGAGAAAGTGGTACCTCTGCCTGAGGAAGGTGGAGT
GCGTGGCCTGCAAGGAGGGCCTCTCCAGTCTGCCTCAGTGCGAGCTGGCT
TTCCCCTACAGAGCTTCCTGTGCTCTCTCGTGGCCAGTCTGCCTCAGTGC
GAGCTGGCTTTCCCCTACAGAGCTTCCTGTGCTCTCTCGTGG
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