prot_M-pyrifera_M_contig87569.20338.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig87569.20338.1
Unique Nameprot_M-pyrifera_M_contig87569.20338.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length49
Homology
BLAST of mRNA_M-pyrifera_M_contig87569.20338.1 vs. uniprot
Match: A0A3D5DHL5_9GAMM (Mismatch-specific DNA-glycosylase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DHL5_9GAMM)

HSP 1 Score: 55.5 bits (132), Expect = 4.890e-8
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 0
Query:    9 SLEWGAQAQLCAGAAVFVTPNPSAANAAYSFDDIVRWMDRL 49
            S++WG Q   CAGA +F++PNPS ANAAYS  +I  W D+L
Sbjct:  131 SIDWGEQKSSCAGAVIFISPNPSTANAAYSLAEITAWYDKL 171          
BLAST of mRNA_M-pyrifera_M_contig87569.20338.1 vs. uniprot
Match: A0A1T2L345_9GAMM (UDG domain-containing protein n=2 Tax=Gammaproteobacteria incertae sedis TaxID=118884 RepID=A0A1T2L345_9GAMM)

HSP 1 Score: 52.8 bits (125), Expect = 5.510e-7
Identity = 25/49 (51.02%), Postives = 31/49 (63.27%), Query Frame = 0
Query:    1 YAQGVRFESLEWGAQAQLCAGAAVFVTPNPSAANAAYSFDDIVRWMDRL 49
            Y Q VR  S+EWG Q++    + VFVTPNPS ANAA+S   +  W  RL
Sbjct:  136 YTQNVRVPSIEWGEQSERIGNSMVFVTPNPSPANAAFSLQVLTEWDQRL 184          
BLAST of mRNA_M-pyrifera_M_contig87569.20338.1 vs. uniprot
Match: A0A7V5UAW6_9GAMM (Mismatch-specific DNA-glycosylase n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7V5UAW6_9GAMM)

HSP 1 Score: 52.0 bits (123), Expect = 1.230e-6
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 0
Query:    2 AQGVRFESLEWGAQAQLCAGAAVFVTPNPSAANAAYSFDDIVRWMDRL 49
            A G+ F +  WG Q +  AG  VFV+PNPS ANAA+S DD+VR  D L
Sbjct:  140 AVGLSFSNDHWGLQQETVAGLPVFVSPNPSPANAAFSLDDLVRCYDEL 187          
BLAST of mRNA_M-pyrifera_M_contig87569.20338.1 vs. uniprot
Match: A0A1G0JT32_9GAMM (UDG domain-containing protein n=1 Tax=Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_52_10 TaxID=1798297 RepID=A0A1G0JT32_9GAMM)

HSP 1 Score: 47.8 bits (112), Expect = 3.940e-5
Identity = 21/41 (51.22%), Postives = 29/41 (70.73%), Query Frame = 0
Query:    9 SLEWGAQAQLCAGAAVFVTPNPSAANAAYSFDDIVRWMDRL 49
            ++ WGAQ  L   + VFVTPNPS ANA YS DD++++ D +
Sbjct:  130 TIPWGAQKYLIGKSRVFVTPNPSPANAQYSLDDLIKYYDAM 170          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87569.20338.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A3D5DHL5_9GAMM4.890e-856.10Mismatch-specific DNA-glycosylase n=1 Tax=Gammapro... [more]
A0A1T2L345_9GAMM5.510e-751.02UDG domain-containing protein n=2 Tax=Gammaproteob... [more]
A0A7V5UAW6_9GAMM1.230e-654.17Mismatch-specific DNA-glycosylase n=1 Tax=Chromati... [more]
A0A1G0JT32_9GAMM3.940e-551.22UDG domain-containing protein n=1 Tax=Gammaproteob... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036895Uracil-DNA glycosylase-like domain superfamilyGENE3D3.40.470.10coord: 1..49
e-value: 1.3E-6
score: 29.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87569contigM-pyrifera_M_contig87569:683..829 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87569.20338.1mRNA_M-pyrifera_M_contig87569.20338.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig87569 683..829 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig87569.20338.1 ID=prot_M-pyrifera_M_contig87569.20338.1|Name=mRNA_M-pyrifera_M_contig87569.20338.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
YAQGVRFESLEWGAQAQLCAGAAVFVTPNPSAANAAYSFDDIVRWMDRL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036895Uracil-DNA_glycosylase-like_sf