mRNA_M-pyrifera_M_contig87565.20335.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87565.20335.1
Unique NamemRNA_M-pyrifera_M_contig87565.20335.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87565.20335.1 vs. uniprot
Match: A0A3D1GK40_9GAMM (Histidine kinase n=2 Tax=Halieaceae TaxID=1706372 RepID=A0A3D1GK40_9GAMM)

HSP 1 Score: 378 bits (970), Expect = 1.050e-117
Identity = 205/284 (72.18%), Postives = 234/284 (82.39%), Query Frame = 1
Query:    1 QSLGASAVISKPTTMESVSQAVLSWVQGATRTDSNVSV----QQRKRVERELKILVAEDIPTNQKIACEVIRMCGYNADIAENGEQAVQMQCQNRYDLIFMDCQMPFMDGFEATRSIRKDEAASKCVRCTIIALTAGTTSSDRKAFFEAGMDGFLGKPFKVEDIRSVLSTHFGPDGLPESMER----RSITERDDQGIETDGIDESAVNNILHIQSQTGKSILKEVYEGFCLQMDEKISELNDDQKAVEPKYLQSVAHAVKSMSANLGAKGVKTIAGKIESDLK 828
            QSL ASA+ISKPTTMESVSQAV++W QGA     N+++    QQ+K V + LKILVAEDIPTNQ+IA EVIRMCGYNADIAENGEQAV+MQCQNRYDLIFMDCQMP MDGF ATRSIR +EA +    CTIIALTAGTTSSDRKAF+EAGMDGFLGKPF+VEDIR+VL+THFG  G  E  ER    RS + + +   +T  IDE AV+NILHIQ QTGK+ILKEVYEGFCLQMD+KISELN+D   +  K LQS+AHAVKSMSANLGAK +K+IAGKIESD+K
Sbjct: 1184 QSLDASALISKPTTMESVSQAVINWAQGA-----NIAIAREAQQQKEVRKPLKILVAEDIPTNQRIASEVIRMCGYNADIAENGEQAVRMQCQNRYDLIFMDCQMPRMDGFAATRSIRNNEAGNGNTPCTIIALTAGTTSSDRKAFYEAGMDGFLGKPFRVEDIRNVLTTHFGEHGFVEGEERHSTSRSSSGKSEASNDTGIIDEPAVSNILHIQEQTGKAILKEVYEGFCLQMDQKISELNNDNNTLGSKNLQSLAHAVKSMSANLGAKEIKSIAGKIESDIK 1462          
BLAST of mRNA_M-pyrifera_M_contig87565.20335.1 vs. uniprot
Match: A0A2D4TAH1_9GAMM (Histidine kinase n=2 Tax=Haliea TaxID=475794 RepID=A0A2D4TAH1_9GAMM)

HSP 1 Score: 368 bits (944), Expect = 4.900e-114
Identity = 203/284 (71.48%), Postives = 228/284 (80.28%), Query Frame = 1
Query:    1 QSLGASAVISKPTTMESVSQAVLSWVQGATRTDSNVSV----QQRKRVERELKILVAEDIPTNQKIACEVIRMCGYNADIAENGEQAVQMQCQNRYDLIFMDCQMPFMDGFEATRSIRKDEAASKCVRCTIIALTAGTTSSDRKAFFEAGMDGFLGKPFKVEDIRSVLSTHFGPDGLPESMER----RSITERDDQGIETDGIDESAVNNILHIQSQTGKSILKEVYEGFCLQMDEKISELNDDQKAVEPKYLQSVAHAVKSMSANLGAKGVKTIAGKIESDLK 828
            QSLGASA+ISKPTTMESVSQAV++W QGA     NV +    QQ+K V + LKILVAEDIPTNQ+IA EVIRMCGYN DIAENGEQAV+MQ QNRYDLIFMDCQMP MDGF ATRSIR  EA S    CTIIALTAGTTSSDRKAFFEAGMDGFLGKPF+VEDIR++L+THFG  G  E  E     RS ++  +   +T  IDE AV+NILHIQ QTGK+ILKEVYEGFCLQMD+KISELN  +  +  + LQS+AHAVKSMSANLGAK +K IAGKIESD+K
Sbjct: 1184 QSLGASALISKPTTMESVSQAVVNWTQGA-----NVGIAGKTQQQKAVRKPLKILVAEDIPTNQRIASEVIRMCGYNTDIAENGEQAVKMQYQNRYDLIFMDCQMPLMDGFAATRSIRNGEAGSDHTPCTIIALTAGTTSSDRKAFFEAGMDGFLGKPFRVEDIRNILTTHFGELGFFEDEESHSTSRSASDTSEASNDTGIIDEPAVSNILHIQEQTGKAILKEVYEGFCLQMDQKISELNSGKNNLGSRNLQSLAHAVKSMSANLGAKEIKAIAGKIESDVK 1462          
BLAST of mRNA_M-pyrifera_M_contig87565.20335.1 vs. uniprot
Match: A0A6C0U2A8_9GAMM (Histidine kinase n=1 Tax=Kineobactrum salinum TaxID=2708301 RepID=A0A6C0U2A8_9GAMM)

HSP 1 Score: 198 bits (504), Expect = 4.690e-54
Identity = 111/234 (47.44%), Postives = 152/234 (64.96%), Query Frame = 1
Query:  145 KILVAEDIPTNQKIACEVIRMCGYNADIAENGEQAVQMQCQNRYDLIFMDCQMPFMDGFEATRSIRKDEAASKCVRCTIIALTAGTTSSDRKAFFEAGMDGFLGKPFKVEDIRSVLSTHFGP----DGLPESMERRSITERDDQGIETDGIDESAVNNILHIQSQTGKSILKEVYEGFCLQMDEKISELNDD--QKAVEPKYLQSVAHAVKSMSANLGAKGVKTIAGKIESDLK 828
            ++L+AEDIPTNQ+IA E+I M GY  +IA +G +AV+MQ +N YDLIFMDCQMP MDG+ A R IR +E      R  IIALTAG +  ++   FE+GM  +LGKPFK++D++ VL+ H       D   +     S  E        D ID  AVNNIL I+  TG++IL +V+ GF  QMDEK+ E++    QK +   Y   +AHA+KSMSAN+GA+ VK+IAG++E+  +
Sbjct: 1209 RVLIAEDIPTNQRIAQEMIEMLGYKVEIASDGSEAVRMQSRNEYDLIFMDCQMPIMDGYTAARQIRTNEEDLGRERVPIIALTAGISRDEKSLCFESGMTDYLGKPFKLDDLKGVLAKHLSQTLQTDRSIDFPVNDSEFEASKNDPNHDVIDYQAVNNILEIEKATGRAILLQVFSGFTKQMDEKLLEIDTALAQKCIADIY--KIAHAIKSMSANIGAEQVKSIAGRLEAQAR 1440          
BLAST of mRNA_M-pyrifera_M_contig87565.20335.1 vs. uniprot
Match: A0A661H6Q2_9GAMM (Histidine kinase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661H6Q2_9GAMM)

HSP 1 Score: 182 bits (461), Expect = 2.430e-48
Identity = 112/274 (40.88%), Postives = 155/274 (56.57%), Query Frame = 1
Query:   25 ISKPTTMESVSQAVLSWVQGATRTDSNVSVQQRKRVER-ELKILVAEDIPTNQKIACEVIRMCGYNADIAENGEQAVQMQCQNRYDLIFMDCQMPFMDGFEATRSIRKDEAASKCVRCTIIALTAGTTSSDRKAFFEAGMDGFLGKPFKVEDIRSVLSTHFGPD-----GLPESMERRSITERDDQGIETDGIDESAVNNILHIQSQTGKSILKEVYEGFCLQMDEKISELNDDQKAVEPKYLQSVAHAVKSMSANLGAKGVKTIAGKIESDLK 828
            ++KP T  ++  A LS +   T+T    ++   K  ++    +LVAED+ TNQ+IA E++ M G   DIA NG  A       +YDLIFMDCQMP MDGF +TR IR  E A+      IIALTAG +  D+    EAGMD +L KPF + ++   L  H   +       P   E R   +        D ++ SAVNNI  ++ QTGKSIL  + +GF  QM+ K++E+ND  K  E   L   AHA+KSMSAN+GA+ V++I+ +IE   K
Sbjct:  785 VTKPVTSSTLESA-LSKIHENTKTYKKSNIPNEKLTKKYTASVLVAEDVETNQRIAQEMLHMLGCKVDIASNGAHAFDKFKSGKYDLIFMDCQMPIMDGFSSTRKIRSFEKANGLTPIPIIALTAGISKDDKLRCKEAGMDDYLTKPFTISELTGALKYHIRSEFRRQTSAPNLEETRHELDLVHPASNHDIVNISAVNNIREVEKQTGKSILPSILKGFEQQMNTKLTEINDSLKNREIDTLYRTAHAIKSMSANIGAEKVRSISAQIEGQAK 1057          
BLAST of mRNA_M-pyrifera_M_contig87565.20335.1 vs. uniprot
Match: A0A2D5FGE6_9GAMM (Histidine kinase n=1 Tax=Haliea sp. TaxID=1932666 RepID=A0A2D5FGE6_9GAMM)

HSP 1 Score: 180 bits (457), Expect = 9.090e-48
Identity = 102/236 (43.22%), Postives = 145/236 (61.44%), Query Frame = 1
Query:  127 RVERELKILVAEDIPTNQKIACEVIRMCGYNADIAENGEQAVQMQCQNRYDLIFMDCQMPFMDGFEATRSIRKDEAASKCVRCTIIALTAGTTSSDRKAFFEAGMDGFLGKPFKVEDIRSVLSTHFGPD----GLPESMERRSITERDDQGIETDGIDESAVNNILHIQSQTGKSILKEVYEGFCLQMDEKISELND--DQKAVEPKYLQSVAHAVKSMSANLGAKGVKTIAGKIE 816
            RV+R++++LVAED+  NQ+I  E++ + G +  + E+GE+A+  Q ++ +D+IFMDCQMP  DG EATR IR  E A+   R  ++ALTAG TS +R    E+GMD FL KPF  EDIR VL+++FG D        S E R     DD+ I    +D  AV NI  ++ QTG+ I  +V E F  Q  +K+ +LN   D      + + S+ HA+KSMSAN+GA  V+ +A  IE
Sbjct: 1222 RVQRKIRVLVAEDLEVNQRIISEILSLVGCDVTVVEDGEKALAAQLEHSFDIIFMDCQMPVRDGIEATRLIRAAEEANGFNRVPVVALTAGNTSEERSKAIESGMDRFLSKPFTFEDIRGVLASYFGADLGGSSCEVSGESRPCEGSDDESI----VDSDAVRNIRSLEEQTGRLIFDKVLEKFNEQFSDKLRDLNAVLDVGPYNYEQVASLGHAIKSMSANVGAASVRAVASDIE 1453          
BLAST of mRNA_M-pyrifera_M_contig87565.20335.1 vs. uniprot
Match: A0A4R5LUR8_9GAMM (Histidine kinase n=1 Tax=Seongchinamella unica TaxID=2547392 RepID=A0A4R5LUR8_9GAMM)

HSP 1 Score: 179 bits (455), Expect = 1.680e-47
Identity = 110/272 (40.44%), Postives = 161/272 (59.19%), Query Frame = 1
Query:   25 ISKPTTMESVSQAVLSWVQGATRTDSNVSVQQRKRVERE-LKILVAEDIPTNQKIACEVIRMCGYNADIAENGEQAVQMQCQNRYDLIFMDCQMPFMDGFEATRSIRKDEAASKCVRCTIIALTAGTTSSDRKAFFEAGMDGFLGKPFKVEDIRSVLSTHFGPDG---LPESMERRSITERDDQGI----ETDGIDESAVNNILHIQSQTGKSILKEVYEGFCLQMDEKISELNDDQKAVEPKYLQSVAHAVKSMSANLGAKGVKTIAGKIE 816
            ++KP T+ S+ +A+ +     +R   N   Q  K    + LK+LVAED+ TNQKI  E+I M G++ ++  NG  AV       +DLIFMDCQMP MDGFEAT+ IR+ E     +   IIALTAG    DR    +AGMD ++GKPF V DIR  +S+    +    + ++  ++S     D G      T  I++ AVN I+ I++QTGK IL E+++G+  QM++K  E+ ++    E + L   AHA+KSMSAN+GA+ V+ I+  IE
Sbjct: 1179 VTKPITLTSMQEALEAT--SKSRHAPNTQYQHNKPASTKMLKVLVAEDVATNQKIVREMISMLGHSVEVVGNGADAVASHESGDFDLIFMDCQMPVMDGFEATKKIREAEKELGRLHIPIIALTAGLGRDDRAKCRDAGMDHYVGKPFTVSDIRRAISSFTNQESQRTITQNFSQKSSKTPGDDGALRKESTPIINQQAVNAIIEIETQTGKRILPEIFDGYRTQMEQKFHEIAENISTQEIELLAKSAHAIKSMSANIGAQKVREISSLIE 1448          
BLAST of mRNA_M-pyrifera_M_contig87565.20335.1 vs. uniprot
Match: A0A3L7E297_9GAMM (Histidine kinase n=1 Tax=Seongchinamella sediminis TaxID=2283635 RepID=A0A3L7E297_9GAMM)

HSP 1 Score: 176 bits (447), Expect = 1.970e-46
Identity = 111/281 (39.50%), Postives = 167/281 (59.43%), Query Frame = 1
Query:    7 LGASAVISKPTTMESVSQAVLSWVQGATRTDSNVSVQQRKRVERELKILVAEDIPTNQKIACEVIRMCGYNADIAENGEQAVQMQCQNRYDLIFMDCQMPFMDGFEATRSIRKDEAASKCVRCTIIALTAGTTSSDRKAFFEAGMDGFLGKPFKVEDIRSVLSTHF------GPDGLPESMERRSITERDDQGIETDGI-DESAVNNILHIQSQTGKSILKEVYEGFCLQMDEKISELNDDQKAVEPKYLQSVAHAVKSMSANLGAKGVKTIAGKIESDLK 828
            LGA   ++KP T+ S+  A LS VQ    + +      +     +LKILVAED+ TNQKI  E+I M G++ ++ ENG  AV    ++ +DLIFMDCQMP MDGF AT+ IR+ EA     R  IIALTAG    D+     +GMD ++GKPF V DIR+ +S+          +    ++   +  +  DQ  E   I ++ AV  I+ I++QTG  IL ++++G+  QM++K+ E+  +   ++ + L   AHAVKSMSAN+GA+ V++I+ +IE+  K
Sbjct: 1173 LGAWIHVTKPITLNSIQDA-LSDVQNFKASLNAPQKNAKLFSTNKLKILVAEDVATNQKIIREMIAMLGHSVEVVENGLDAVARYNEDNFDLIFMDCQMPIMDGFLATQKIRESEAVRSSSRTPIIALTAGLGKEDKAKCKASGMDLYVGKPFTVSDIRNAISSFSRRYISRAKNANSTAIIEEAFEDTPDQKTEKSQIINQQAVKAIIDIENQTGNQILPDIFDGYKKQMEQKLEEIRMNVNDLDIEQLTKSAHAVKSMSANIGAQKVRSISSQIEASSK 1452          
BLAST of mRNA_M-pyrifera_M_contig87565.20335.1 vs. uniprot
Match: A0A496X420_9GAMM (Histidine kinase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A496X420_9GAMM)

HSP 1 Score: 176 bits (446), Expect = 2.690e-46
Identity = 104/270 (38.52%), Postives = 158/270 (58.52%), Query Frame = 1
Query:   25 ISKPTTMESVSQAVLSWVQGATRTDSNVSVQQRKRVERELKILVAEDIPTNQKIACEVIRMCGYNADIAENGEQAVQMQCQNRYDLIFMDCQMPFMDGFEATRSIRKDEAASKCVRCTIIALTAGTTSSDRKAFFEAGMDGFLGKPFKVEDIRSVLSTHFGPDGLPESMERRSITERDDQGIETDG------IDESAVNNILHIQSQTGKSILKEVYEGFCLQMDEKISELNDDQKAVEPKYLQSVAHAVKSMSANLGAKGVKTIAGKIE 816
            ++KP T  ++  A+L   +     + + S + +   + + +ILVAED+ TNQ+IA E+++M G   DIA NGE A +   + +YDLIFMDCQMP MDGF +T+ IR  E  ++     IIALTAGT   D+    +AGM+ +L KPF + ++   LS H              + E D + +   G      ++ SA+NNI  ++ QTGKSIL  + +GF  QM  K++E+ D+ +  E   L   AHA+KSMSAN+GA+ V++I+ +IE
Sbjct: 1187 VTKPITSSTLESALLKLTEDVEIPNKSTSSKDKLAKKSKNRILVAEDVETNQRIAQEMLQMLGCEVDIASNGEIAFEKFQKEKYDLIFMDCQMPVMDGFSSTKLIRSFEKINELPPIPIIALTAGTGKEDQMRCKDAGMNNYLTKPFSISELTEALSYHI-QSKFKRQASASHVREIDQEPVVMPGTSNYDVVNMSAINNIREVEKQTGKSILPRILDGFEQQMVTKLAEIGDNLRKEEAGALFRNAHAIKSMSANIGAEKVRSISSQIE 1455          
BLAST of mRNA_M-pyrifera_M_contig87565.20335.1 vs. uniprot
Match: A0A165S009_9GAMM (Histidine kinase n=4 Tax=Halioglobus TaxID=1217416 RepID=A0A165S009_9GAMM)

HSP 1 Score: 176 bits (445), Expect = 3.650e-46
Identity = 101/248 (40.73%), Postives = 148/248 (59.68%), Query Frame = 1
Query:   91 RTDSNVSVQQRKRVERELKILVAEDIPTNQKIACEVIRMCGYNADIAENGEQAVQMQCQNRYDLIFMDCQMPFMDGFEATRSIRKDEAASKCVRCTIIALTAGTTSSDRKAFFEAGMDGFLGKPFKVEDIRSVL--STHFGPDGLPESMERRSITERDDQGIETDGIDESAVNNILHIQSQTGKSILKEVYEGFCLQMDEKISELNDDQKAVEPKYLQSVAHAVKSMSANLGAKGVKTIAGKIESDLK 828
            R +SN+  +  K  E ++ ILVAED+ TNQ+I  E++ M G    IAENGE+AV     N +DLI MDCQMP MDGF+AT+ IRK E   K     I+ALTAG   +DR+   +AGMD F+ KPF ++DI+  L  ST  G   +  +    S+   D   +  D  DE A++ IL ++  TGK +L +V++G+  Q  +K+S++    ++ +   +   AHA+KS+SAN+GA  V+ I+  IE   K
Sbjct: 1201 RAESNIDTKSPKNNENQISILVAEDVSTNQEIVIEMLGMMGLTVTIAENGEEAVAKHKSNPFDLILMDCQMPVMDGFDATKKIRKFETELKLKPAKIVALTAGINPTDREKCVDAGMDHFISKPFSIDDIKGALDISTRSGLRDIQFTNNTNSLEAVD---LHQDIFDEKAISTILEVEKFTGKPLLFKVFDGYREQFAQKLSQIEHCIESNDFTEIARTAHAIKSLSANVGAIKVRGISATIEEGAK 1445          
BLAST of mRNA_M-pyrifera_M_contig87565.20335.1 vs. uniprot
Match: A0A4Z0M3U7_9GAMM (Histidine kinase n=1 Tax=Haliea sp. SAOS-164 TaxID=2562682 RepID=A0A4Z0M3U7_9GAMM)

HSP 1 Score: 175 bits (443), Expect = 6.760e-46
Identity = 105/261 (40.23%), Postives = 162/261 (62.07%), Query Frame = 1
Query:   67 LSWVQGATRTDSNVSVQQRKRVERE-LKILVAEDIPTNQKIACEVIRMCGYNADIAENGEQAVQMQCQNRYDLIFMDCQMPFMDGFEATRSIRKDEAASKCVRCTIIALTAGTTSSDRKAFFEAGMDGFLGKPFKVEDIRSVLSTHFG-PDGLPESME---RRSITERDDQGIET--DGIDESAVNNILHIQSQTGKSILKEVYEGFCLQMDEKISELNDDQKAVEPKYLQSVAHAVKSMSANLGAKGVKTIAGKIESDLK 828
            +S +  ++ T  ++  +Q +   +E ++ILVAED+ TNQKI  E++ + GY   IA +G++A+ M   + + LIFMDCQMP MDGF+AT +IRK EA +   R  I+ALTAG    ++  +FEAGMD FL KPF + +I+S +S   G PD  P+  E   R S   +D    +T  D ++ +A+  IL ++ ++ K +LK+V+EG+  QM EK+  +  + +  +   L   +HA+KSMSANLGA  V +I+ +IES  K
Sbjct: 1198 ISRLNKSSSTPLDIDAEQAQTKPKENVRILVAEDVETNQKIILEILSILGYEYAIAGDGKEAISMFRAHPFSLIFMDCQMPVMDGFDATLAIRKIEAENGQKRTPIVALTAGLNRDEKSKYFEAGMDFFLSKPFTLAEIQSCISEFVGNPDTTPKDREAEKRESWNPKDIDSRDTPNDIVNLNAIQTILEVEKRSSKPLLKQVFEGYVEQMAEKLLSMEVEVEQGDTYALAKTSHAIKSMSANLGATKVLSISAQIESKCK 1458          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87565.20335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D1GK40_9GAMM1.050e-11772.18Histidine kinase n=2 Tax=Halieaceae TaxID=1706372 ... [more]
A0A2D4TAH1_9GAMM4.900e-11471.48Histidine kinase n=2 Tax=Haliea TaxID=475794 RepID... [more]
A0A6C0U2A8_9GAMM4.690e-5447.44Histidine kinase n=1 Tax=Kineobactrum salinum TaxI... [more]
A0A661H6Q2_9GAMM2.430e-4840.88Histidine kinase n=1 Tax=Gammaproteobacteria bacte... [more]
A0A2D5FGE6_9GAMM9.090e-4843.22Histidine kinase n=1 Tax=Haliea sp. TaxID=1932666 ... [more]
A0A4R5LUR8_9GAMM1.680e-4740.44Histidine kinase n=1 Tax=Seongchinamella unica Tax... [more]
A0A3L7E297_9GAMM1.970e-4639.50Histidine kinase n=1 Tax=Seongchinamella sediminis... [more]
A0A496X420_9GAMM2.690e-4638.52Histidine kinase n=1 Tax=Gammaproteobacteria bacte... [more]
A0A165S009_9GAMM3.650e-4640.73Histidine kinase n=4 Tax=Halioglobus TaxID=1217416... [more]
A0A4Z0M3U7_9GAMM6.760e-4640.23Histidine kinase n=1 Tax=Haliea sp. SAOS-164 TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87565contigM-pyrifera_M_contig87565:2..829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score172.9
Seed ortholog evalue2e-40
Seed eggNOG ortholog247634.GPB2148_2796
Preferred namesasS
KEGG koko:K07709
KEGG Pathwayko02020,map02020
KEGG ModuleM00499
Hectar predicted targeting categoryother localisation
EggNOG free text desc.T COG0642 Signal transduction histidine kinase
EggNOG OGs1J7SY@118884,1RCM9@1224,1T3JR@1236,COG3292@1,COG3292@2,COG4191@1,COG4191@2
EC2.7.13.3
COG Functional cat.T
Best tax levelunclassified Gammaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02022
Exons1
Model size828
Cds size828
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816784.1802654-CDS-M-pyrifera_M_contig87565:1..8291622816784.1802654-CDS-M-pyrifera_M_contig87565:1..829Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87565 2..829 +
1692278176.4117525-CDS-M-pyrifera_M_contig87565:1..8291692278176.4117525-CDS-M-pyrifera_M_contig87565:1..829Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87565 2..829 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87565.20335.1prot_M-pyrifera_M_contig87565.20335.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87565 2..829 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87565.20335.1

>prot_M-pyrifera_M_contig87565.20335.1 ID=prot_M-pyrifera_M_contig87565.20335.1|Name=mRNA_M-pyrifera_M_contig87565.20335.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=276bp
QSLGASAVISKPTTMESVSQAVLSWVQGATRTDSNVSVQQRKRVERELKI
LVAEDIPTNQKIACEVIRMCGYNADIAENGEQAVQMQCQNRYDLIFMDCQ
MPFMDGFEATRSIRKDEAASKCVRCTIIALTAGTTSSDRKAFFEAGMDGF
LGKPFKVEDIRSVLSTHFGPDGLPESMERRSITERDDQGIETDGIDESAV
NNILHIQSQTGKSILKEVYEGFCLQMDEKISELNDDQKAVEPKYLQSVAH
AVKSMSANLGAKGVKTIAGKIESDLK
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mRNA from alignment at M-pyrifera_M_contig87565:2..829+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87565.20335.1 ID=mRNA_M-pyrifera_M_contig87565.20335.1|Name=mRNA_M-pyrifera_M_contig87565.20335.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig87565:2..829+ (Macrocystis pyrifera P11B4 male)
CAAAGCCTAGGTGCAAGTGCTGTCATCAGCAAACCTACCACGATGGAGAG CGTAAGCCAGGCAGTCCTAAGTTGGGTGCAAGGCGCTACTAGAACGGACT CGAACGTGTCGGTGCAGCAGCGAAAAAGAGTCGAGAGAGAACTCAAGATA TTAGTCGCCGAAGATATCCCAACTAACCAGAAAATTGCTTGTGAAGTTAT TAGAATGTGCGGTTACAACGCCGATATCGCTGAGAATGGCGAGCAAGCAG TGCAGATGCAATGCCAAAATCGCTACGACTTAATATTCATGGATTGCCAG ATGCCATTTATGGATGGATTTGAGGCGACACGTTCCATTCGGAAAGACGA AGCAGCGAGTAAATGCGTACGATGCACAATTATCGCCCTTACTGCGGGAA CAACTTCAAGTGATCGTAAGGCATTTTTCGAAGCCGGAATGGACGGCTTC CTCGGCAAGCCGTTCAAGGTTGAAGATATCCGAAGTGTTTTATCGACTCA TTTCGGCCCGGATGGCCTTCCCGAAAGCATGGAAAGACGGAGCATTACGG AAAGAGATGACCAGGGCATTGAGACTGACGGCATTGACGAATCTGCCGTT AATAATATATTGCACATTCAGAGTCAGACAGGGAAATCGATCCTCAAGGA AGTGTACGAAGGTTTTTGCCTCCAGATGGACGAGAAGATTTCAGAACTCA ACGATGACCAAAAAGCAGTTGAGCCGAAGTATCTGCAGTCTGTCGCTCAC GCGGTCAAGTCGATGAGTGCCAACTTAGGCGCTAAAGGGGTAAAAACGAT AGCTGGAAAAATTGAGTCTGACCTTAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87565:2..829+

>mRNA_M-pyrifera_M_contig87565.20335.1 ID=mRNA_M-pyrifera_M_contig87565.20335.1|Name=mRNA_M-pyrifera_M_contig87565.20335.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1656bp|location=Sequence derived from alignment at M-pyrifera_M_contig87565:2..829+ (Macrocystis pyrifera P11B4 male)
CAAAGCCTAGGTGCAAGTGCTGTCATCAGCAAACCTACCACGATGGAGAG
CGTAAGCCAGGCAGTCCTAAGTTGGGTGCAAGGCGCTACTAGAACGGACT
CGAACGTGTCGGTGCAGCAGCGAAAAAGAGTCGAGAGAGAACTCAAGATA
TTAGTCGCCGAAGATATCCCAACTAACCAGAAAATTGCTTGTGAAGTTAT
TAGAATGTGCGGTTACAACGCCGATATCGCTGAGAATGGCGAGCAAGCAG
TGCAGATGCAATGCCAAAATCGCTACGACTTAATATTCATGGATTGCCAG
ATGCCATTTATGGATGGATTTGAGGCGACACGTTCCATTCGGAAAGACGA
AGCAGCGAGTAAATGCGTACGATGCACAATTATCGCCCTTACTGCGGGAA
CAACTTCAAGTGATCGTAAGGCATTTTTCGAAGCCGGAATGGACGGCTTC
CTCGGCAAGCCGTTCAAGGTTGAAGATATCCGAAGTGTTTTATCGACTCA
TTTCGGCCCGGATGGCCTTCCCGAAAGCATGGAAAGACGGAGCATTACGG
AAAGAGATGACCAGGGCATTGAGACTGACGGCATTGACGAATCTGCCGTT
AATAATATATTGCACATTCAGAGTCAGACAGGGAAATCGATCCTCAAGGA
AGTGTACGAAGGTTTTTGCCTCCAGATGGACGAGAAGATTTCAGAACTCA
ACGATGACCAAAAAGCAGTTGAGCCGAAGTATCTGCAGTCTGTCGCTCAC
GCGGTCAAGTCGATGAGTGCCAACTTAGGCGCTAAAGGGGTAAAAACGAT
AGCTGGAAAAATTGAGTCTGACCTTAAGCAAAGCCTAGGTGCAAGTGCTG
TCATCAGCAAACCTACCACGATGGAGAGCGTAAGCCAGGCAGTCCTAAGT
TGGGTGCAAGGCGCTACTAGAACGGACTCGAACGTGTCGGTGCAGCAGCG
AAAAAGAGTCGAGAGAGAACTCAAGATATTAGTCGCCGAAGATATCCCAA
CTAACCAGAAAATTGCTTGTGAAGTTATTAGAATGTGCGGTTACAACGCC
GATATCGCTGAGAATGGCGAGCAAGCAGTGCAGATGCAATGCCAAAATCG
CTACGACTTAATATTCATGGATTGCCAGATGCCATTTATGGATGGATTTG
AGGCGACACGTTCCATTCGGAAAGACGAAGCAGCGAGTAAATGCGTACGA
TGCACAATTATCGCCCTTACTGCGGGAACAACTTCAAGTGATCGTAAGGC
ATTTTTCGAAGCCGGAATGGACGGCTTCCTCGGCAAGCCGTTCAAGGTTG
AAGATATCCGAAGTGTTTTATCGACTCATTTCGGCCCGGATGGCCTTCCC
GAAAGCATGGAAAGACGGAGCATTACGGAAAGAGATGACCAGGGCATTGA
GACTGACGGCATTGACGAATCTGCCGTTAATAATATATTGCACATTCAGA
GTCAGACAGGGAAATCGATCCTCAAGGAAGTGTACGAAGGTTTTTGCCTC
CAGATGGACGAGAAGATTTCAGAACTCAACGATGACCAAAAAGCAGTTGA
GCCGAAGTATCTGCAGTCTGTCGCTCACGCGGTCAAGTCGATGAGTGCCA
ACTTAGGCGCTAAAGGGGTAAAAACGATAGCTGGAAAAATTGAGTCTGAC
CTTAAG
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