mRNA_M-pyrifera_M_contig87494.20323.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87494.20323.1
Unique NamemRNA_M-pyrifera_M_contig87494.20323.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87494.20323.1 vs. uniprot
Match: A0A058Z640_FONAL (Uncharacterized protein n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058Z640_FONAL)

HSP 1 Score: 102 bits (255), Expect = 9.460e-23
Identity = 61/151 (40.40%), Postives = 89/151 (58.94%), Query Frame = 1
Query:    1 ENPLVLDALGEVYMETGRAADAEEVLQSSVRIAPEVGGQKYLWLGQLYGGEEGGRLLRKGISVLESMVHRGGGEGVEVMVRQLSSAWCSVAELYMTDLCDNEEAEGEAAAAAEKACECDPTNPEAFLCLANVRLCQCQTEPATAALQQALS 453
            +N   L+      +E G    A +VL+  V I+P  G  K+L LGQL+ G E     R+G+ VL+S +     E    ++RQLSSA+C++AE+Y+TD CD+++AE +     E+A + DPTNPEAFL   ++R+ Q     A AAL Q LS
Sbjct:   57 DNIHALELQAAALLELGEVDQAFQVLKKCVDISPTTGHDKFLTLGQLHAGHEALGFFRRGVEVLQSDLQIAPAEYHPGLIRQLSSAFCTMAEIYLTDCCDDDDAEQQCVTLVEQAIQADPTNPEAFLMQCSLRISQEDPSGAGAALDQCLS 207          
BLAST of mRNA_M-pyrifera_M_contig87494.20323.1 vs. uniprot
Match: A0A7S4UJA5_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UJA5_GUITH)

HSP 1 Score: 96.3 bits (238), Expect = 1.830e-20
Identity = 62/150 (41.33%), Postives = 88/150 (58.67%), Query Frame = 1
Query:   13 VLDALGEVYMETGRAADAEEVLQSSVRIAPEVGGQKYLWLGQLYGGEEGGRLLRKGISVLESM---VHRGGGEGVEVMVRQLSSAWCSVAELYMTDLCDNEEAEGEAAAAAEKACECDPTNPEAFLCLANVRLCQCQTEPATAALQQALS 453
            +LDA GE+ +E GR+ DA ++ + S+ + PE    KY+ LGQL  G E   L  KG++++      V    GE  + +  +L SA CSVAELYMTDLCD E AE        +A E +  +PE ++  AN+RLCQC+ + A  A  +ALS
Sbjct:   48 LLDAAGELCVEVGRSDDAVKLFRRSIELRPEENSCKYMNLGQLMAGAESLELFLKGLALMRQELGNVAEEKGEEAKKLRGRLCSAHCSVAELYMTDLCDEENAEASCEENLSRAQEYNAESPELWVQWANLRLCQCRGDDAKKAAYKALS 197          
BLAST of mRNA_M-pyrifera_M_contig87494.20323.1 vs. uniprot
Match: A0A6M2CPZ4_RHIMP (Putative rna polymerase iii transcription factor tfiiic n=7 Tax=Rhipicephalus TaxID=34630 RepID=A0A6M2CPZ4_RHIMP)

HSP 1 Score: 95.1 bits (235), Expect = 7.520e-20
Identity = 61/157 (38.85%), Postives = 91/157 (57.96%), Query Frame = 1
Query:    4 NPLVLDALGEVYMETGRAADAEEVLQSSVRIAPEVGGQKYLWLGQLYGGEEGGRLLRKGISVL-------ESMVHRGGGEGVEVMVRQLSSAWCSVAELYMTDLCDNEEAEGEAAAAAEKACECDPTNPEAFLCLANVRLCQCQTEPATAALQQALS 453
            N  VLDAL  + +E    + A E+L   V++ P+ G +KYL LGQL GG+E      KG+ +L       + +     G     + R LSSA+C++AE+YMTD CD E+AE + +   +K+ + DP+NPEAF   AN  L + + E A  A+Q++LS
Sbjct:   65 NLKVLDALSSLLLEMADPSSALELLHRMVQLDPDGGYRKYLSLGQLTGGKESLAHYAKGVQILCNLLQEQQGLAAASEGNSEADLNRALSSAYCAMAEIYMTDCCDEEDAEQQCSELVQKSIQADPSNPEAFQVQANFLLVKQEHEAAKEAMQRSLS 221          
BLAST of mRNA_M-pyrifera_M_contig87494.20323.1 vs. uniprot
Match: A0A6P7UX12_IXOSC (probable assembly chaperone of rpl4 n=6 Tax=Ixodes TaxID=6944 RepID=A0A6P7UX12_IXOSC)

HSP 1 Score: 95.1 bits (235), Expect = 7.840e-20
Identity = 59/157 (37.58%), Postives = 89/157 (56.69%), Query Frame = 1
Query:    1 ENPLVLDALGEVYMETGRAADAEEVLQSSVRIAPEVGGQKYLWLGQLYGGEEGGRLLRKGISVLESMVHRGGGEGVEV-------MVRQLSSAWCSVAELYMTDLCDNEEAEGEAAAAAEKACECDPTNPEAFLCLANVRLCQCQTEPATAALQQAL 450
            +N   LD L  + +E G  A A ++LQ  + + P+ G +KYL +GQL  G+E  R   KG+ +L+ ++    G   E        + R+LSSA+C++AE+YMTD C  E+AE + A   EK    DP NPEA  C A+  L +  TE A  A++++L
Sbjct:   63 DNLKTLDVLSGLLLEMGDVAGASQLLQRMIELEPDDGFRKYLSMGQLCDGKESLRHYSKGVEILQRLLGERQGASAEADPEGSGHLSRELSSAYCAMAEIYMTDCCFEEDAETQCAELIEKGLAADPKNPEALQCQASYLLVKQDTEGAQQAMRRSL 219          
BLAST of mRNA_M-pyrifera_M_contig87494.20323.1 vs. uniprot
Match: UPI00189A7732 (probable assembly chaperone of rpl4 n=1 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI00189A7732)

HSP 1 Score: 94.4 bits (233), Expect = 1.140e-19
Identity = 62/158 (39.24%), Postives = 95/158 (60.13%), Query Frame = 1
Query:    1 ENPLVLDALGEVYMETGRAADAEEVLQSSVRIAPEVGGQKYLWLGQLYGGEEGGRLLRKGISVLESMVHRGGG--------EGVEVMVRQLSSAWCSVAELYMTDLCDNEEAEGEAAAAAEKACECDPTNPEAFLCLANVRLCQCQTEPATAALQQAL 450
            +N  VLD L  + +E G +A A E+LQ  V++ P+ G +KYL LGQL  G+E      KG+ +L +++    G         G ++  R LSSA+C++AE+YMTD CD EEAE + +   +K+ + DP+NPEAF   A+  L + + E A  A+Q++L
Sbjct:   64 DNLKVLDVLSSLLLEMGDSAKAFELLQRMVQLDPDGGFRKYLSLGQLTDGKESLAHYAKGVQILCNLLQEQHGLAAPSEESSGADLN-RALSSAYCAMAEIYMTDCCDEEEAEQQCSELVQKSVQADPSNPEAFQVQASFLLVKQEHEAAKEAMQRSL 220          
BLAST of mRNA_M-pyrifera_M_contig87494.20323.1 vs. uniprot
Match: A0A087SXE7_STEMI (UPF0661 TPR repeat-containing protein (Fragment) n=2 Tax=Stegodyphus TaxID=175340 RepID=A0A087SXE7_STEMI)

HSP 1 Score: 93.6 bits (231), Expect = 2.900e-19
Identity = 58/154 (37.66%), Postives = 91/154 (59.09%), Query Frame = 1
Query:   16 LDALGEVYMETGRAADAEEVLQSSVRIAPEVGGQKYLWLGQLYGGEEGGRLLRKGISVLESMVHRGGGEGVEV--------MVRQLSSAWCSVAELYMTDLCDNEEAEGEAAAAAEKACECDPTNPEAFLCLANVRLCQCQTEPATAALQQALS 453
            L+ L  +Y E  + ++A+ +L+  + ++P+ G  KY  +GQL  GEE     +KGI ++E  +     E V+         M+R LS A+CS+AEL+MTD C  E AEG+   + E A + DP+NPEA+ CLAN  L + Q + A  A++++LS
Sbjct:   71 LEMLAGIYTEQLKWSEAQNLLKKCIELSPDNGYTKYFSMGQLCEGEESVLYYKKGIQIIEKELENA--ENVDPSKKVTRSSMLRSLSDAYCSIAELFMTDCCFAENAEGKCYESIEAAIKADPSNPEAYQCLANFHLVKEQIKEAKDAIEKSLS 222          
BLAST of mRNA_M-pyrifera_M_contig87494.20323.1 vs. uniprot
Match: V9L0S3_CALMI (Uncharacterized protein n=4 Tax=Callorhinchus milii TaxID=7868 RepID=V9L0S3_CALMI)

HSP 1 Score: 93.6 bits (231), Expect = 3.600e-19
Identity = 55/141 (39.01%), Postives = 85/141 (60.28%), Query Frame = 1
Query:    1 ENPLVLDALGEVYMETGRAADAEEVLQSSVRIAPEVGGQKYLWLGQLYGGEEGGRLLRKGISVL-------ESMVHRGGG---EGVEVMVRQLSSAWCSVAELYMTDLCDNEEAEGEAAAAAEKACECDPTNPEAFLCLAN 393
            +N  VL+ +G ++ E G +  A+EV Q SV + PE G  KY++LGQ++GGEE  +  RKG  ++       + +V +      + +EV  + +S+A+CSVAE+++TDLC  E A      A EKA E DP+NPEA   +A+
Sbjct:   76 DNITVLEMMGNIFAELGNSEKAKEVFQRSVELRPEEGHAKYMYLGQIHGGEEAVQYFRKGTELMIREYQKQKELVTQAAACDPDNLEVTSQNISTAFCSVAEIFLTDLCLEEGAADNCKEALEKALEYDPSNPEALQLMAS 216          
BLAST of mRNA_M-pyrifera_M_contig87494.20323.1 vs. uniprot
Match: UPI001C3FB01D (uncharacterized protein si:dkey-12j5.1 isoform X1 n=1 Tax=Callorhinchus milii TaxID=7868 RepID=UPI001C3FB01D)

HSP 1 Score: 93.6 bits (231), Expect = 4.500e-19
Identity = 55/141 (39.01%), Postives = 85/141 (60.28%), Query Frame = 1
Query:    1 ENPLVLDALGEVYMETGRAADAEEVLQSSVRIAPEVGGQKYLWLGQLYGGEEGGRLLRKGISVL-------ESMVHRGGG---EGVEVMVRQLSSAWCSVAELYMTDLCDNEEAEGEAAAAAEKACECDPTNPEAFLCLAN 393
            +N  VL+ +G ++ E G +  A+EV Q SV + PE G  KY++LGQ++GGEE  +  RKG  ++       + +V +      + +EV  + +S+A+CSVAE+++TDLC  E A      A EKA E DP+NPEA   +A+
Sbjct:   76 DNITVLEMMGNIFAELGNSEKAKEVFQRSVELRPEEGHAKYMYLGQIHGGEEAVQYFRKGTELMIREYQKQKELVTQAAACDPDNLEVTSQNISTAFCSVAEIFLTDLCLEEGAADNCKEALEKALEYDPSNPEALQLMAS 216          
BLAST of mRNA_M-pyrifera_M_contig87494.20323.1 vs. uniprot
Match: A0A6P8IE58_ACTTE (probable assembly chaperone of rpl4 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IE58_ACTTE)

HSP 1 Score: 92.4 bits (228), Expect = 7.970e-19
Identity = 52/150 (34.67%), Postives = 90/150 (60.00%), Query Frame = 1
Query:   10 LVLDALGEVYMETGRAADAEEVLQSSVRIAPEVGGQKYLWLGQLYGGEEGGRLLRKGISVLESMVH---RGGGEGVEVMVRQLSSAWCSVAELYMTDLCDNEEAEGEAAAAAEKACECDPTNPEAFLCLANVRLCQCQTEPATAALQQAL 450
            L+L+  G V++ETG A  A++  Q ++ + P+ G  KY+++GQ+  G+E      KGI ++ S ++   +G  +   V    +S+A+CS+AE+YMTD C + EAE +     +KA E DP+NP+A+  +AN  + Q + + A   L++ L
Sbjct:   99 LLLETAGAVFLETGEAEKAKKCFQHAIELCPDEGHAKYMYIGQILQGQEAVEAFTKGIELMISTMNSSSKGAAKSDTVSPNDVSTAYCSLAEIYMTDECFDTEAENKCFECCQKAVEYDPSNPDAYQTMANCLMSQEKIQDAQTMLKKGL 248          
BLAST of mRNA_M-pyrifera_M_contig87494.20323.1 vs. uniprot
Match: A0A023G744_AMBTT (Uncharacterized protein (Fragment) n=2 Tax=Amblyomma TaxID=6942 RepID=A0A023G744_AMBTT)

HSP 1 Score: 91.7 bits (226), Expect = 1.310e-18
Identity = 62/157 (39.49%), Postives = 93/157 (59.24%), Query Frame = 1
Query:    4 NPLVLDALGEVYMETGRAADAEEVLQSSVRIAPEVGGQKYLWLGQLYGGEEGGRLLRKGISVLESMVHRGGG--------EGVEVMVRQLSSAWCSVAELYMTDLCDNEEAEGEAAAAAEKACECDPTNPEAFLCLANVRLCQCQTEPATAALQQAL 450
            N  VLD+L  + +E G  A A E+LQ  V++ P+ G QKYL LGQL  G+E      KG+ +L  ++ +  G         G E+  R LSSA+C++AE+YMTD CD ++AE + A   +K+ E DP+NPE +   A+  L + + E A  A+Q++L
Sbjct:   60 NLKVLDSLSGLLLEMGDPASAFELLQRMVQLEPDQGFQKYLSLGQLTEGKESLAHYGKGVQLLCDILQKQPGPAATSEECNGTELN-RALSSAYCAMAEIYMTDCCDEDDAETQCADLVQKSIEADPSNPETYQVQASYLLVKQEHEAAKEAMQRSL 215          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87494.20323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A058Z640_FONAL9.460e-2340.40Uncharacterized protein n=1 Tax=Fonticula alba Tax... [more]
A0A7S4UJA5_GUITH1.830e-2041.33Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A6M2CPZ4_RHIMP7.520e-2038.85Putative rna polymerase iii transcription factor t... [more]
A0A6P7UX12_IXOSC7.840e-2037.58probable assembly chaperone of rpl4 n=6 Tax=Ixodes... [more]
UPI00189A77321.140e-1939.24probable assembly chaperone of rpl4 n=1 Tax=Dermac... [more]
A0A087SXE7_STEMI2.900e-1937.66UPF0661 TPR repeat-containing protein (Fragment) n... [more]
V9L0S3_CALMI3.600e-1939.01Uncharacterized protein n=4 Tax=Callorhinchus mili... [more]
UPI001C3FB01D4.500e-1939.01uncharacterized protein si:dkey-12j5.1 isoform X1 ... [more]
A0A6P8IE58_ACTTE7.970e-1934.67probable assembly chaperone of rpl4 n=1 Tax=Actini... [more]
A0A023G744_AMBTT1.310e-1839.49Uncharacterized protein (Fragment) n=2 Tax=Amblyom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87494contigM-pyrifera_M_contig87494:2..562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score107.5
Seed ortholog evalue7.1e-21
Seed eggNOG ortholog691883.XP_009496305.1
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0019538,GO:0019941,GO:0030163,GO:0030433,GO:0033554,GO:0034976,GO:0036503,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051603,GO:0051716,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901698
EggNOG free text desc.ribosome biogenesis
EggNOG OGs28JWA@1,2QSAH@2759,39WKB@33154
COG Functional cat.S
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons1
Model size561
Cds size561
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816783.6326795-CDS-M-pyrifera_M_contig87494:1..5621622816783.6326795-CDS-M-pyrifera_M_contig87494:1..562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87494 2..562 +
1692278176.094169-CDS-M-pyrifera_M_contig87494:1..5621692278176.094169-CDS-M-pyrifera_M_contig87494:1..562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87494 2..562 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87494.20323.1prot_M-pyrifera_M_contig87494.20323.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87494 2..562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87494.20323.1

>prot_M-pyrifera_M_contig87494.20323.1 ID=prot_M-pyrifera_M_contig87494.20323.1|Name=mRNA_M-pyrifera_M_contig87494.20323.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=187bp
ENPLVLDALGEVYMETGRAADAEEVLQSSVRIAPEVGGQKYLWLGQLYGG
EEGGRLLRKGISVLESMVHRGGGEGVEVMVRQLSSAWCSVAELYMTDLCD
NEEAEGEAAAAAEKACECDPTNPEAFLCLANVRLCQCQTEPATAALQQAL
SALKQEDQKGEIKDEAEESGSGGGDGGEGGGEEATSS
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mRNA from alignment at M-pyrifera_M_contig87494:2..562+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87494.20323.1 ID=mRNA_M-pyrifera_M_contig87494.20323.1|Name=mRNA_M-pyrifera_M_contig87494.20323.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=561bp|location=Sequence derived from alignment at M-pyrifera_M_contig87494:2..562+ (Macrocystis pyrifera P11B4 male)
GAGAATCCGCTCGTGTTAGATGCCTTGGGAGAAGTATATATGGAAACTGG TCGAGCTGCTGACGCAGAAGAAGTGTTACAATCGTCTGTGCGCATAGCAC CTGAAGTTGGAGGGCAGAAGTACCTATGGCTGGGCCAATTATACGGGGGC GAGGAAGGTGGTCGATTGCTGCGCAAAGGCATTTCTGTGCTCGAGTCTAT GGTGCATCGAGGTGGAGGAGAAGGGGTGGAGGTGATGGTGCGCCAGCTAT CTTCCGCATGGTGCTCTGTCGCAGAGCTGTACATGACAGATCTCTGTGAC AATGAAGAAGCAGAAGGAGAAGCTGCAGCAGCGGCAGAAAAGGCATGTGA ATGTGACCCCACCAACCCCGAAGCATTCCTTTGTCTCGCAAACGTCAGAC TATGCCAATGCCAAACAGAACCTGCCACAGCAGCCCTCCAACAAGCACTC TCTGCTCTCAAACAAGAAGATCAAAAAGGTGAAATCAAAGACGAAGCTGA AGAAAGTGGAAGTGGAGGAGGAGATGGGGGAGAGGGTGGTGGGGAAGAAG CTACTTCCTCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87494:2..562+

>mRNA_M-pyrifera_M_contig87494.20323.1 ID=mRNA_M-pyrifera_M_contig87494.20323.1|Name=mRNA_M-pyrifera_M_contig87494.20323.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1122bp|location=Sequence derived from alignment at M-pyrifera_M_contig87494:2..562+ (Macrocystis pyrifera P11B4 male)
GAGAATCCGCTCGTGTTAGATGCCTTGGGAGAAGTATATATGGAAACTGG
TCGAGCTGCTGACGCAGAAGAAGTGTTACAATCGTCTGTGCGCATAGCAC
CTGAAGTTGGAGGGCAGAAGTACCTATGGCTGGGCCAATTATACGGGGGC
GAGGAAGGTGGTCGATTGCTGCGCAAAGGCATTTCTGTGCTCGAGTCTAT
GGTGCATCGAGGTGGAGGAGAAGGGGTGGAGGTGATGGTGCGCCAGCTAT
CTTCCGCATGGTGCTCTGTCGCAGAGCTGTACATGACAGATCTCTGTGAC
AATGAAGAAGCAGAAGGAGAAGCTGCAGCAGCGGCAGAAAAGGCATGTGA
ATGTGACCCCACCAACCCCGAAGCATTCCTTTGTCTCGCAAACGTCAGAC
TATGCCAATGCCAAACAGAACCTGCCACAGCAGCCCTCCAACAAGCACTC
TCTGCTCTCAAACAAGAAGATCAAAAAGGTGAAATCAAAGACGAAGCTGA
AGAAAGTGGAAGTGGAGGAGGAGATGGGGGAGAGGGTGGTGGGGAAGAAG
CTACTTCCTCTGAGAATCCGCTCGTGTTAGATGCCTTGGGAGAAGTATAT
ATGGAAACTGGTCGAGCTGCTGACGCAGAAGAAGTGTTACAATCGTCTGT
GCGCATAGCACCTGAAGTTGGAGGGCAGAAGTACCTATGGCTGGGCCAAT
TATACGGGGGCGAGGAAGGTGGTCGATTGCTGCGCAAAGGCATTTCTGTG
CTCGAGTCTATGGTGCATCGAGGTGGAGGAGAAGGGGTGGAGGTGATGGT
GCGCCAGCTATCTTCCGCATGGTGCTCTGTCGCAGAGCTGTACATGACAG
ATCTCTGTGACAATGAAGAAGCAGAAGGAGAAGCTGCAGCAGCGGCAGAA
AAGGCATGTGAATGTGACCCCACCAACCCCGAAGCATTCCTTTGTCTCGC
AAACGTCAGACTATGCCAATGCCAAACAGAACCTGCCACAGCAGCCCTCC
AACAAGCACTCTCTGCTCTCAAACAAGAAGATCAAAAAGGTGAAATCAAA
GACGAAGCTGAAGAAAGTGGAAGTGGAGGAGGAGATGGGGGAGAGGGTGG
TGGGGAAGAAGCTACTTCCTCT
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