mRNA_M-pyrifera_M_contig109761.2032.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109761.2032.1
Unique NamemRNA_M-pyrifera_M_contig109761.2032.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109761.2032.1 vs. uniprot
Match: A0A3D5DHE5_9GAMM (CoA ester lyase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DHE5_9GAMM)

HSP 1 Score: 201 bits (512), Expect = 2.560e-62
Identity = 104/127 (81.89%), Postives = 113/127 (88.98%), Query Frame = 1
Query:    1 DMAAELRVEPSWEALLYARSRLVHAAASAQIDLIDVPYLDLEDMAGLEREAALCAKLGMTGKGAIHPKQLAIIERHFSPGDAQIAHARHLTTAFEQADGGLLVVDGKLIEKPVLRSQYRILAIAERL 381
            DMAAELRVEP+W ALLYAR+RLVHAAA AQIDLIDVPYLDL DM GLE+EA   A +GMTGKGAIHPKQL IIERHFSP D QIAHA+ +T AFE+A+ GLLVVDGKLIEKPVLRSQYRILAIA+RL
Sbjct:  163 DMAAELRVEPTWTALLYARTRLVHAAAMAQIDLIDVPYLDLSDMDGLEQEAEASAGIGMTGKGAIHPKQLPIIERHFSPSDNQIAHAKRVTEAFEKANTGLLVVDGKLIEKPVLRSQYRILAIAKRL 289          
BLAST of mRNA_M-pyrifera_M_contig109761.2032.1 vs. uniprot
Match: A0A7C7HPS4_9GAMM (CoA ester lyase (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C7HPS4_9GAMM)

HSP 1 Score: 191 bits (486), Expect = 2.450e-60
Identity = 99/127 (77.95%), Postives = 108/127 (85.04%), Query Frame = 1
Query:    1 DMAAELRVEPSWEALLYARSRLVHAAASAQIDLIDVPYLDLEDMAGLEREAALCAKLGMTGKGAIHPKQLAIIERHFSPGDAQIAHARHLTTAFEQADGGLLVVDGKLIEKPVLRSQYRILAIAERL 381
            DM+AELRVEP+WE LLYARSRLVHAAASAQIDLIDVPYLDL DM GLE EAALCA+LGMTGKGAIHPKQL  I RHF+P    I  AR +T+ FE A  GL+VV+GKLIEKPVLRS YRILAIA+RL
Sbjct:   24 DMSAELRVEPTWEGLLYARSRLVHAAASAQIDLIDVPYLDLNDMPGLEIEAALCAQLGMTGKGAIHPKQLEPISRHFTPNIEAITRARKITSTFEAAGTGLVVVEGKLIEKPVLRSMYRILAIADRL 150          
BLAST of mRNA_M-pyrifera_M_contig109761.2032.1 vs. uniprot
Match: A0A7C8D686_9GAMM (CoA ester lyase n=3 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A7C8D686_9GAMM)

HSP 1 Score: 190 bits (482), Expect = 6.570e-58
Identity = 98/127 (77.17%), Postives = 108/127 (85.04%), Query Frame = 1
Query:    1 DMAAELRVEPSWEALLYARSRLVHAAASAQIDLIDVPYLDLEDMAGLEREAALCAKLGMTGKGAIHPKQLAIIERHFSPGDAQIAHARHLTTAFEQADGGLLVVDGKLIEKPVLRSQYRILAIAERL 381
            DM+AELRVEP+WEALLYARSRLVHAAASAQIDLIDVPYLDL DM GLE EA+LCA+LGMTGKGAIHP QL  I RHF+P    I  AR +T+ FE A  GL+VV+GKLIEKPVLRS YRILAIA+RL
Sbjct:  160 DMSAELRVEPTWEALLYARSRLVHAAASAQIDLIDVPYLDLNDMPGLEIEASLCAQLGMTGKGAIHPNQLEPINRHFTPNIEAITRARKITSTFEAAGTGLVVVEGKLIEKPVLRSMYRILAIADRL 286          
BLAST of mRNA_M-pyrifera_M_contig109761.2032.1 vs. uniprot
Match: A0A437QQY0_9PROT (CoA ester lyase n=2 Tax=Hwanghaeella grinnelliae TaxID=2500179 RepID=A0A437QQY0_9PROT)

HSP 1 Score: 185 bits (469), Expect = 5.870e-56
Identity = 96/131 (73.28%), Postives = 106/131 (80.92%), Query Frame = 1
Query:    1 DMAAELRVEPSWEALLYARSRLVHAAASAQIDLIDVPYLDLEDMAGLEREAALCAKLGMTGKGAIHPKQLAIIERHFSPGDAQIAHARHLTTAFEQADGGLLVVDGKLIEKPVLRSQYRILAIAERLRQRH 393
            DMAA+LRVEPSWEALLYAR R VHAAA A +DLIDVPYLDL DM GL  EA   A +GMTGKGAIHPKQL IIE+ FSP + QIA+AR  T AFEQAD GL+VVD KL+EKPVLRS YR+LAIAE L  R+
Sbjct:  157 DMAADLRVEPSWEALLYARLRCVHAAAGAGVDLIDVPYLDLNDMDGLAEEAKRAAAIGMTGKGAIHPKQLPIIEKTFSPSEDQIAYARRATAAFEQADTGLVVVDNKLLEKPVLRSMYRVLAIAEVLEDRY 287          
BLAST of mRNA_M-pyrifera_M_contig109761.2032.1 vs. uniprot
Match: A0A2E8YEK0_9GAMM (CoA ester lyase n=1 Tax=Thiotrichales bacterium TaxID=2026796 RepID=A0A2E8YEK0_9GAMM)

HSP 1 Score: 180 bits (457), Expect = 3.500e-54
Identity = 91/128 (71.09%), Postives = 104/128 (81.25%), Query Frame = 1
Query:    1 DMAAELRVEPSWEALLYARSRLVHAAASAQIDLIDVPYLDLEDMAGLEREAALCAKLGMTGKGAIHPKQLAIIERHFSPGDAQIAHARHLTTAFEQADGGLLVVDGKLIEKPVLRSQYRILAIAERLR 384
            DMAAELRVEP W+ALLYARSR+VHAAA A +D IDVP+LDL DM GLEREA+ C KLG+TGK AIHPKQ+ +I + F+P    I  AR +TT FEQ D GL+V+D KLIEKPVLRS YRILAIAERLR
Sbjct:  157 DMAAELRVEPIWDALLYARSRVVHAAAGAGLDFIDVPFLDLSDMDGLEREASACRKLGITGKAAIHPKQIPVINKIFTPTSEDIDLARRITTEFEQGDSGLVVIDNKLIEKPVLRSMYRILAIAERLR 284          
BLAST of mRNA_M-pyrifera_M_contig109761.2032.1 vs. uniprot
Match: A0A352VRD3_9BACT (CoA ester lyase n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A352VRD3_9BACT)

HSP 1 Score: 171 bits (434), Expect = 1.220e-50
Identity = 85/127 (66.93%), Postives = 102/127 (80.31%), Query Frame = 1
Query:    1 DMAAELRVEPSWEALLYARSRLVHAAASAQIDLIDVPYLDLEDMAGLEREAALCAKLGMTGKGAIHPKQLAIIERHFSPGDAQIAHARHLTTAFEQADGGLLVVDGKLIEKPVLRSQYRILAIAERL 381
            DMAAELR + +WE LLYARSR+VHAAASA ID IDVPYLDL D+ G+ REA L A LG  GKGAIHPKQ+A++   FSPG+A +AHAR +  AF +AD GL+VVDGKLIE+PVLR   R+LA+AER+
Sbjct:  160 DMAAELRCKNAWEPLLYARSRVVHAAASAGIDAIDVPYLDLNDLEGMRREAELAADLGFCGKGAIHPKQIAVLNEVFSPGEAAVAHARRILNAFAEADTGLVVVDGKLIERPVLREMTRLLAVAERV 286          
BLAST of mRNA_M-pyrifera_M_contig109761.2032.1 vs. uniprot
Match: A0A2E4SKF5_9GAMM (CoA ester lyase (Fragment) n=1 Tax=Acidiferrobacteraceae bacterium TaxID=2024893 RepID=A0A2E4SKF5_9GAMM)

HSP 1 Score: 166 bits (420), Expect = 1.310e-50
Identity = 84/127 (66.14%), Postives = 101/127 (79.53%), Query Frame = 1
Query:    1 DMAAELRVEPSWEALLYARSRLVHAAASAQIDLIDVPYLDLEDMAGLEREAALCAKLGMTGKGAIHPKQLAIIERHFSPGDAQIAHARHLTTAFEQADGGLLVVDGKLIEKPVLRSQYRILAIAERL 381
            DMAAELR   +WE LLYARSR+VHAAASA ID IDVPYLDLED+ G+ REA L  +LG +GKG+IHPKQ+ I+   F+P +++IAHAR +  AF +AD GL+VVDGKLIEKPVLR   RIL+I ERL
Sbjct:    2 DMAAELRCSNAWEPLLYARSRVVHAAASAGIDAIDVPYLDLEDLDGMAREATLARELGFSGKGSIHPKQIPILNDVFTPSESEIAHARRILDAFAKADTGLVVVDGKLIEKPVLRDMQRILSIVERL 128          
BLAST of mRNA_M-pyrifera_M_contig109761.2032.1 vs. uniprot
Match: A0A383AH38_9ZZZZ (HpcH_HpaI domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A383AH38_9ZZZZ)

HSP 1 Score: 166 bits (419), Expect = 2.570e-49
Identity = 81/127 (63.78%), Postives = 104/127 (81.89%), Query Frame = 1
Query:    1 DMAAELRVEPSWEALLYARSRLVHAAASAQIDLIDVPYLDLEDMAGLEREAALCAKLGMTGKGAIHPKQLAIIERHFSPGDAQIAHARHLTTAFEQADGGLLVVDGKLIEKPVLRSQYRILAIAERL 381
            DMAAELR   +WE LLYARSR+VHAAA+A ID+IDVPYLDL D+ G+EREA L  +LG +GKGAIHPKQ+ I+ + F+P +++IAHA+ +  AFE AD GL+VVDGKLIE+PV+R   RIL+IA+R+
Sbjct:   87 DMAAELRCRNAWEPLLYARSRVVHAAAAAGIDVIDVPYLDLNDLTGMEREACLARELGFSGKGAIHPKQIPILNQVFTPSESEIAHAQKILRAFEAADTGLVVVDGKLIEQPVIREMRRILSIADRI 213          
BLAST of mRNA_M-pyrifera_M_contig109761.2032.1 vs. uniprot
Match: A0A2S6R3V3_9PROT (L-malyl-CoA/beta-methylmalyl-CoA lyase n=1 Tax=Alphaproteobacteria bacterium MarineAlpha10_Bin2 TaxID=2013104 RepID=A0A2S6R3V3_9PROT)

HSP 1 Score: 164 bits (415), Expect = 1.100e-48
Identity = 84/130 (64.62%), Postives = 100/130 (76.92%), Query Frame = 1
Query:    1 DMAAELRVEPSWEALLYARSRLVHAAASAQIDLIDVPYLDLEDMAGLEREAALCAKLGMTGKGAIHPKQLAIIERHFSPGDAQIAHARHLTTAFEQADGGLLVVDGKLIEKPVLRSQYRILAIAERLRQR 390
            DMAAELRV P WE L  ARS+LVHAAA A +DLIDVP+LDLED+ GL  EA   A LG TGKGAIHPKQ+A +   FSP +A+I +AR +  AFE+ D GL+++D KLIEKPVLRS YRILAIAE  ++R
Sbjct:   87 DMAAELRVAPVWEPLFRARSQLVHAAAGAGVDLIDVPFLDLEDIDGLREEAERSAALGFTGKGAIHPKQIATLNEAFSPSEAEIDYARRVIQAFEEGDSGLVLIDNKLIEKPVLRSMYRILAIAEAAQKR 216          
BLAST of mRNA_M-pyrifera_M_contig109761.2032.1 vs. uniprot
Match: A0A8G2BM76_9PROT ((S)-citramalyl-CoA lyase n=2 Tax=Thalassobaculum TaxID=526215 RepID=A0A8G2BM76_9PROT)

HSP 1 Score: 166 bits (420), Expect = 1.160e-48
Identity = 81/124 (65.32%), Postives = 98/124 (79.03%), Query Frame = 1
Query:    1 DMAAELRVEPSWEALLYARSRLVHAAASAQIDLIDVPYLDLEDMAGLEREAALCAKLGMTGKGAIHPKQLAIIERHFSPGDAQIAHARHLTTAFEQADGGLLVVDGKLIEKPVLRSQYRILAIA 372
            DMAA+LR E +WEALLYARSR+VHAAA A +D+IDVP+LDL DM G+ REA     LG  GKG+IHPKQ+ ++   FSP +A+IAHAR +  AFEQ D GL+V+DGKLIEKPVLRS YR+LA A
Sbjct:  155 DMAADLRCEYTWEALLYARSRVVHAAAGAGVDVIDVPFLDLNDMDGMRREAEAARALGFCGKGSIHPKQVPVLNEIFSPSEAEIAHARRIVDAFEQGDSGLVVIDGKLIEKPVLRSMYRVLARA 278          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109761.2032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DHE5_9GAMM2.560e-6281.89CoA ester lyase n=1 Tax=Gammaproteobacteria bacter... [more]
A0A7C7HPS4_9GAMM2.450e-6077.95CoA ester lyase (Fragment) n=1 Tax=Gammaproteobact... [more]
A0A7C8D686_9GAMM6.570e-5877.17CoA ester lyase n=3 Tax=Gammaproteobacteria TaxID=... [more]
A0A437QQY0_9PROT5.870e-5673.28CoA ester lyase n=2 Tax=Hwanghaeella grinnelliae T... [more]
A0A2E8YEK0_9GAMM3.500e-5471.09CoA ester lyase n=1 Tax=Thiotrichales bacterium Ta... [more]
A0A352VRD3_9BACT1.220e-5066.93CoA ester lyase n=2 Tax=Gemmatimonadetes bacterium... [more]
A0A2E4SKF5_9GAMM1.310e-5066.14CoA ester lyase (Fragment) n=1 Tax=Acidiferrobacte... [more]
A0A383AH38_9ZZZZ2.570e-4963.78HpcH_HpaI domain-containing protein (Fragment) n=1... [more]
A0A2S6R3V3_9PROT1.100e-4864.62L-malyl-CoA/beta-methylmalyl-CoA lyase n=1 Tax=Alp... [more]
A0A8G2BM76_9PROT1.160e-4865.32(S)-citramalyl-CoA lyase n=2 Tax=Thalassobaculum T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109761contigM-pyrifera_M_contig109761:3..407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score155.6
Seed ortholog evalue1.6e-35
Seed eggNOG ortholog331869.BAL199_10280
Preferred namecitE
KEGG rclassRC00067,RC00502,RC01118,RC01205
KEGG koko:K01644,ko:K18292
KEGG ReactionR00237,R00362
KEGG Pathwayko00660,ko01100,ko02020,map00660,map01100,map02020
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the HpcH HpaI aldolase family
EggNOG OGs1MW0A@1224,2TTC0@28211,4BQR7@82117,COG2301@1,COG2301@2
EC4.1.3.25,4.1.3.34
COG Functional cat.G
Best tax levelunclassified Alphaproteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size405
Cds size402
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.6331704-UTR-M-pyrifera_M_contig109761:2..51622815607.6331704-UTR-M-pyrifera_M_contig109761:2..5Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109761 3..5 +
1692277485.0914106-UTR-M-pyrifera_M_contig109761:2..51692277485.0914106-UTR-M-pyrifera_M_contig109761:2..5Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109761 3..5 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.6457024-CDS-M-pyrifera_M_contig109761:5..4071622815607.6457024-CDS-M-pyrifera_M_contig109761:5..407Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109761 6..407 +
1692277485.1054738-CDS-M-pyrifera_M_contig109761:5..4071692277485.1054738-CDS-M-pyrifera_M_contig109761:5..407Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109761 6..407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109761.2032.1prot_M-pyrifera_M_contig109761.2032.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109761 6..407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109761.2032.1

>prot_M-pyrifera_M_contig109761.2032.1 ID=prot_M-pyrifera_M_contig109761.2032.1|Name=mRNA_M-pyrifera_M_contig109761.2032.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
MAAELRVEPSWEALLYARSRLVHAAASAQIDLIDVPYLDLEDMAGLEREA
ALCAKLGMTGKGAIHPKQLAIIERHFSPGDAQIAHARHLTTAFEQADGGL
LVVDGKLIEKPVLRSQYRILAIAERLRQRHRHD*
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mRNA from alignment at M-pyrifera_M_contig109761:3..407+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109761.2032.1 ID=mRNA_M-pyrifera_M_contig109761.2032.1|Name=mRNA_M-pyrifera_M_contig109761.2032.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=405bp|location=Sequence derived from alignment at M-pyrifera_M_contig109761:3..407+ (Macrocystis pyrifera P11B4 male)
GACATGGCCGCGGAATTGCGCGTCGAGCCGAGCTGGGAAGCATTGTTGTA CGCCCGGTCGCGCCTCGTGCACGCGGCCGCGAGCGCGCAAATCGACCTGA TCGACGTCCCTTACCTGGACCTCGAGGACATGGCGGGCCTGGAACGCGAA GCCGCTCTTTGCGCGAAACTCGGTATGACCGGCAAAGGCGCGATCCATCC GAAGCAGCTAGCGATAATCGAACGGCATTTCAGTCCGGGTGACGCGCAGA TCGCGCACGCGCGACACCTTACGACAGCGTTCGAGCAGGCCGACGGCGGC TTGCTCGTCGTCGACGGCAAGCTCATCGAAAAACCGGTATTGCGCTCGCA ATACCGGATCCTCGCTATCGCCGAACGGCTGCGACAACGGCACCGGCACG ATTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109761:3..407+

>mRNA_M-pyrifera_M_contig109761.2032.1 ID=mRNA_M-pyrifera_M_contig109761.2032.1|Name=mRNA_M-pyrifera_M_contig109761.2032.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig109761:3..407+ (Macrocystis pyrifera P11B4 male)
ATGGCCGCGGAATTGCGCGTCGAGCCGAGCTGGGAAGCATTGTTGTACGC
CCGGTCGCGCCTCGTGCACGCGGCCGCGAGCGCGCAAATCGACCTGATCG
ACGTCCCTTACCTGGACCTCGAGGACATGGCGGGCCTGGAACGCGAAGCC
GCTCTTTGCGCGAAACTCGGTATGACCGGCAAAGGCGCGATCCATCCGAA
GCAGCTAGCGATAATCGAACGGCATTTCAGTCCGGGTGACGCGCAGATCG
CGCACGCGCGACACCTTACGACAGCGTTCGAGCAGGCCGACGGCGGCTTG
CTCGTCGTCGACGGCAAGCTCATCGAAAAACCGGTATTGCGCTCGCAATA
CCGGATCCTCGCTATCGCCGAACGGCTGCGACAACGGCACCGGCACGATT
GAATGGCCGCGGAATTGCGCGTCGAGCCGAGCTGGGAAGCATTGTTGTAC
GCCCGGTCGCGCCTCGTGCACGCGGCCGCGAGCGCGCAAATCGACCTGAT
CGACGTCCCTTACCTGGACCTCGAGGACATGGCGGGCCTGGAACGCGAAG
CCGCTCTTTGCGCGAAACTCGGTATGACCGGCAAAGGCGCGATCCATCCG
AAGCAGCTAGCGATAATCGAACGGCATTTCAGTCCGGGTGACGCGCAGAT
CGCGCACGCGCGACACCTTACGACAGCGTTCGAGCAGGCCGACGGCGGCT
TGCTCGTCGTCGACGGCAAGCTCATCGAAAAACCGGTATTGCGCTCGCAA
TACCGGATCCTCGCTATCGCCGAACGGCTGCGACAACGGCACCGGCACGA
TTGA
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