mRNA_M-pyrifera_M_contig87424.20317.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87424.20317.1
Unique NamemRNA_M-pyrifera_M_contig87424.20317.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87424.20317.1 vs. uniprot
Match: A0A5A8CA24_CAFRO (RING-type domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CA24_CAFRO)

HSP 1 Score: 114 bits (284), Expect = 1.310e-30
Identity = 52/111 (46.85%), Postives = 64/111 (57.66%), Query Frame = 1
Query:    1 RFEIKKWSSTAMWSWNVEQDRCAICRNSIYEPSIENQASRYVLEAPCRRLWVFLGPFPLQTLTNISTVFCCCSVSEVNVAWGACNHCFHLECISRWLKSNMVGGIRGDGWV 333
            RFE+KKW++ A WSW+VEQDRCAICRNSIYEPSIE QA+                                  +++V ++WG CNHCFHLECISRWL+SN    +    WV
Sbjct:   22 RFEVKKWNAVAFWSWDVEQDRCAICRNSIYEPSIEIQAA---------------------------------GLTDVTISWGECNHCFHLECISRWLRSNNTCPLCSAEWV 99          
BLAST of mRNA_M-pyrifera_M_contig87424.20317.1 vs. uniprot
Match: A0A812N3D3_9DINO (Rbx-1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812N3D3_9DINO)

HSP 1 Score: 111 bits (278), Expect = 1.020e-27
Identity = 59/129 (45.74%), Postives = 72/129 (55.81%), Query Frame = 1
Query:    1 RFEIKKWSSTAMWSWNVEQDRCAICRNSIYEPSIENQASRYVLEAPC-----------------RRLWV-FLGPFPLQTLTNISTVFCCCSVSEVNVAWGACNHCFHLECISRWLKSNMVGGIRGDGWV 333
            RFE+KKW++ A WSW+VEQDRCAICRNSIYEPSIE QA+   + A                   RR  V  LG +        S +       +V ++WG CNHCFHLECISRWL+SN    +    WV
Sbjct:  157 RFEVKKWNAVAFWSWDVEQDRCAICRNSIYEPSIEIQAAGLTVSARALPTGPPHEHGRRKPALQRRARVRLLGEWRGLPPRAPSLLL------DVTISWGECNHCFHLECISRWLRSNNTCPLCSAEWV 279          
BLAST of mRNA_M-pyrifera_M_contig87424.20317.1 vs. uniprot
Match: A0A226P105_COLVI (Uncharacterized protein n=1 Tax=Colinus virginianus TaxID=9014 RepID=A0A226P105_COLVI)

HSP 1 Score: 106 bits (265), Expect = 2.650e-27
Identity = 52/123 (42.28%), Postives = 69/123 (56.10%), Query Frame = 1
Query:    1 RFEIKKWSSTAMWSWNVEQDRCAICRNSIYEPSIENQASRYVLEAPC-RRLWVFLGPFPLQTLTNISTVFCC------------CSVSEVNVAWGACNHCFHLECISRWLKSNMVGGIRGDGW 330
            RFE+KKWS+ A+WSW++  D CAICRN I +  IE QA++YVL +    R  +++  F    L ++S+ FC              S  E  VAWG CNH FH  CISRWLK+  V  +    W
Sbjct:   12 RFEVKKWSAVALWSWDIVVDNCAICRNHIMDLCIECQANQYVLTSQVYTRPSIYVSYFVSLRLAHMSSRFCSFSFLLFAVFQGSASSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNAEW 134          
BLAST of mRNA_M-pyrifera_M_contig87424.20317.1 vs. uniprot
Match: A0A7S1QNA5_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1QNA5_NEODS)

HSP 1 Score: 92.4 bits (228), Expect = 3.520e-22
Identity = 45/110 (40.91%), Postives = 57/110 (51.82%), Query Frame = 1
Query:    1 RFEIKKWSSTAMWSWNVEQDRCAICRNSIYEPSIENQASRYVLEAPCRRLWVFLGPFPLQTLTNISTVFCCCSVSEVNVAWGACNHCFHLECISRWLKSNMVGGIRGDGW 330
            RFEIKKW++ A+WSW++  D CAICRN I +  IE QA++                   Q+ TN           E +VAWG CNH FH  CISRWLK+  V  +    W
Sbjct:   14 RFEIKKWNAVALWSWDLNVDTCAICRNHIMDLCIECQANQ-------------------QSATN----------DECSVAWGVCNHAFHFHCISRWLKTRQVCPLDNKEW 94          
BLAST of mRNA_M-pyrifera_M_contig87424.20317.1 vs. uniprot
Match: A0A1M8A8N6_MALS4 (Similar to S.cerevisiae protein HRT1 (RING-H2 domain core subunit of multiple ubiquitin ligase complexes) n=1 Tax=Malassezia sympodialis (strain ATCC 42132) TaxID=1230383 RepID=A0A1M8A8N6_MALS4)

HSP 1 Score: 92.0 bits (227), Expect = 6.060e-22
Identity = 45/111 (40.54%), Postives = 56/111 (50.45%), Query Frame = 1
Query:    1 RFEIKKWSSTAMWSWNVEQDRCAICRNSIYEPSIENQASRYVLEAPCRRLWVFLGPFPLQTLTNISTVFCCCSVSEVNVAWGACNHCFHLECISRWLKSNMVGGIRGDGWV 333
            RF++KKW+S  +WSW+++ D CAICRN I +  IE QA+                    Q  T I          E  VAWGACNH FH  CISRWLK+  V  +    WV
Sbjct:   21 RFQVKKWNSVCLWSWDIQVDNCAICRNQIMDLCIECQAN--------------------QGSTTID---------ECTVAWGACNHAFHFHCISRWLKTRPVCPLDNREWV 102          
BLAST of mRNA_M-pyrifera_M_contig87424.20317.1 vs. uniprot
Match: A0A836HLC2_LEIEN (RING-type domain-containing protein n=6 Tax=Leishmaniinae TaxID=1286322 RepID=A0A836HLC2_LEIEN)

HSP 1 Score: 91.7 bits (226), Expect = 8.130e-22
Identity = 44/111 (39.64%), Postives = 58/111 (52.25%), Query Frame = 1
Query:    1 RFEIKKWSSTAMWSWNVEQDRCAICRNSIYEPSIENQASRYVLEAPCRRLWVFLGPFPLQTLTNISTVFCCCSVSEVNVAWGACNHCFHLECISRWLKSNMVGGIRGDGWV 333
            RF++KKW++ A+WSW+++ D CAICRN I +  IE Q+                         N S     CS  +  VAWGACNH FH+ CISRWLK+  V  +    WV
Sbjct:   20 RFQLKKWNAVALWSWDIQVDTCAICRNHIMDLCIECQS-------------------------NPS-----CSPKDCTVAWGACNHAFHMHCISRWLKTRNVCPLDNKEWV 100          
BLAST of mRNA_M-pyrifera_M_contig87424.20317.1 vs. uniprot
Match: A0A836LB11_9TRYP (RING-type domain-containing protein n=1 Tax=Porcisia hertigi TaxID=2761500 RepID=A0A836LB11_9TRYP)

HSP 1 Score: 91.7 bits (226), Expect = 8.130e-22
Identity = 43/111 (38.74%), Postives = 58/111 (52.25%), Query Frame = 1
Query:    1 RFEIKKWSSTAMWSWNVEQDRCAICRNSIYEPSIENQASRYVLEAPCRRLWVFLGPFPLQTLTNISTVFCCCSVSEVNVAWGACNHCFHLECISRWLKSNMVGGIRGDGWV 333
            RF++KKW++ A+WSW+++ D CAICRN I +  IE Q+                         N+S     CS  +  V WGACNH FH+ CISRWLK+  V  +    WV
Sbjct:   20 RFQLKKWNAVALWSWDIQVDTCAICRNHIMDLCIECQS-------------------------NLS-----CSSKDCTVVWGACNHAFHVHCISRWLKTRNVCPLDNKEWV 100          
BLAST of mRNA_M-pyrifera_M_contig87424.20317.1 vs. uniprot
Match: A0A836II31_9TRYP (RING-type domain-containing protein n=7 Tax=Leishmania TaxID=5658 RepID=A0A836II31_9TRYP)

HSP 1 Score: 91.7 bits (226), Expect = 8.130e-22
Identity = 44/111 (39.64%), Postives = 58/111 (52.25%), Query Frame = 1
Query:    1 RFEIKKWSSTAMWSWNVEQDRCAICRNSIYEPSIENQASRYVLEAPCRRLWVFLGPFPLQTLTNISTVFCCCSVSEVNVAWGACNHCFHLECISRWLKSNMVGGIRGDGWV 333
            RF++KKW++ A+WSW+++ D CAICRN I +  IE Q+                         N S     CS  +  VAWGACNH FH+ CISRWLK+  V  +    WV
Sbjct:   20 RFQLKKWNAVALWSWDIQVDTCAICRNHIMDLCIECQS-------------------------NPS-----CSPKDCTVAWGACNHAFHMHCISRWLKTRNVCPLDNKEWV 100          
BLAST of mRNA_M-pyrifera_M_contig87424.20317.1 vs. uniprot
Match: A8PUW7_MALGO (RING-type domain-containing protein n=1 Tax=Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) TaxID=425265 RepID=A8PUW7_MALGO)

HSP 1 Score: 91.3 bits (225), Expect = 1.400e-21
Identity = 42/111 (37.84%), Postives = 56/111 (50.45%), Query Frame = 1
Query:    1 RFEIKKWSSTAMWSWNVEQDRCAICRNSIYEPSIENQASRYVLEAPCRRLWVFLGPFPLQTLTNISTVFCCCSVSEVNVAWGACNHCFHLECISRWLKSNMVGGIRGDGWV 333
            RF++KKW+S  +WSW+++ D CAICRN I +  IE QA++                                ++ E  VAWGACNH FH  CISRWLK+  V  +    WV
Sbjct:   17 RFQVKKWNSVCLWSWDIQVDNCAICRNQIMDLCIECQANQGSA-----------------------------TIDECTVAWGACNHAFHFHCISRWLKTRPVCPLDNREWV 98          
BLAST of mRNA_M-pyrifera_M_contig87424.20317.1 vs. uniprot
Match: A0A088RS78_9TRYP (Ring-box protein 1, putative n=4 Tax=Leishmania TaxID=5658 RepID=A0A088RS78_9TRYP)

HSP 1 Score: 90.5 bits (223), Expect = 2.130e-21
Identity = 43/111 (38.74%), Postives = 58/111 (52.25%), Query Frame = 1
Query:    1 RFEIKKWSSTAMWSWNVEQDRCAICRNSIYEPSIENQASRYVLEAPCRRLWVFLGPFPLQTLTNISTVFCCCSVSEVNVAWGACNHCFHLECISRWLKSNMVGGIRGDGWV 333
            RF++KKW++ A+WSW+++ D CAICRN I +  IE Q+                         N S     C+  +  VAWGACNH FH+ CISRWLK+  V  +    WV
Sbjct:   17 RFQLKKWNAVALWSWDIQVDTCAICRNHIMDLCIECQS-------------------------NPS-----CAPKDCTVAWGACNHAFHMHCISRWLKTRNVCPLDNKEWV 97          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87424.20317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CA24_CAFRO1.310e-3046.85RING-type domain-containing protein n=1 Tax=Cafete... [more]
A0A812N3D3_9DINO1.020e-2745.74Rbx-1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A226P105_COLVI2.650e-2742.28Uncharacterized protein n=1 Tax=Colinus virginianu... [more]
A0A7S1QNA5_NEODS3.520e-2240.91Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
A0A1M8A8N6_MALS46.060e-2240.54Similar to S.cerevisiae protein HRT1 (RING-H2 doma... [more]
A0A836HLC2_LEIEN8.130e-2239.64RING-type domain-containing protein n=6 Tax=Leishm... [more]
A0A836LB11_9TRYP8.130e-2238.74RING-type domain-containing protein n=1 Tax=Porcis... [more]
A0A836II31_9TRYP8.130e-2239.64RING-type domain-containing protein n=7 Tax=Leishm... [more]
A8PUW7_MALGO1.400e-2137.84RING-type domain-containing protein n=1 Tax=Malass... [more]
A0A088RS78_9TRYP2.130e-2138.74Ring-box protein 1, putative n=4 Tax=Leishmania Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87424contigM-pyrifera_M_contig87424:33..455 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score89.4
Seed ortholog evalue1.2e-15
Seed eggNOG ortholog42254.XP_004622739.1
Preferred nameRBX1
KEGG koko:K03868
KEGG Pathwayko03420,ko04066,ko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04341,ko04350,ko04710,ko05200,ko05211,map03420,map04066,map04110,map04111,map04114,map04120,map04141,map04310,map04341,map04350,map04710,map05200,map05211
KEGG ModuleM00379,M00380,M00381,M00382,M00383,M00384,M00385,M00386,M00387,M00407,M00411
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NEDD8 transferase activity
EggNOG OGs3A1H3@33154,3BQD6@33208,3D7EM@33213,3JH3H@40674,48ET5@7711,49BDZ@7742,COG5194@1,KOG2930@2759
EC2.3.2.32
COG Functional cat.O
Best tax levelMammalia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400,ko04121
Exons2
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816783.2286458-CDS-M-pyrifera_M_contig87424:32..2341622816783.2286458-CDS-M-pyrifera_M_contig87424:32..234Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87424 33..234 -
1692278175.833239-CDS-M-pyrifera_M_contig87424:32..2341692278175.833239-CDS-M-pyrifera_M_contig87424:32..234Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87424 33..234 -
1622816783.2414112-CDS-M-pyrifera_M_contig87424:321..4551622816783.2414112-CDS-M-pyrifera_M_contig87424:321..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87424 322..455 -
1692278175.8442562-CDS-M-pyrifera_M_contig87424:321..4551692278175.8442562-CDS-M-pyrifera_M_contig87424:321..455Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87424 322..455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87424.20317.1prot_M-pyrifera_M_contig87424.20317.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87424 33..455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87424.20317.1

>prot_M-pyrifera_M_contig87424.20317.1 ID=prot_M-pyrifera_M_contig87424.20317.1|Name=mRNA_M-pyrifera_M_contig87424.20317.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
RFEIKKWSSTAMWSWNVEQDRCAICRNSIYEPSIENQASRYVLEAPCRRL
WVFLGPFPLQTLTNISTVFCCCSVSEVNVAWGACNHCFHLECISRWLKSN
MVGGIRGDGWV*
back to top

mRNA from alignment at M-pyrifera_M_contig87424:33..455-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87424.20317.1 ID=mRNA_M-pyrifera_M_contig87424.20317.1|Name=mRNA_M-pyrifera_M_contig87424.20317.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=423bp|location=Sequence derived from alignment at M-pyrifera_M_contig87424:33..455- (Macrocystis pyrifera P11B4 male)
AGGTTTGAGATCAAGAAATGGTCATCAACTGCGATGTGGAGCTGGAACGT GGAACAAGACAGATGCGCCATTTGCAGAAACAGTATCTACGAACCCTCTA TTGAGAATCAGGCATCCAGGTATGTGTTGGAAGCGTGTGGGGAGAGCAGG GGTGTGGGTAGGGAATTGGGTGGTGGAGGTTTGGGTGGGGTTTTGGAGTG ATCTTGTGGAAAGTAGACAAGTCCTTGCCGACGTTTGTGGGTATTTCTTG GACCCTTTCCCCTGCAAACCCTCACCAACATATCTACTGTGTTTTGTTGT TGCAGTGTGAGCGAAGTGAATGTGGCTTGGGGTGCTTGTAACCATTGTTT CCACCTGGAATGCATCTCTCGTTGGCTGAAATCGAACATGGTAGGTGGAA TTCGGGGTGATGGGTGGGTGTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig87424:33..455-

>mRNA_M-pyrifera_M_contig87424.20317.1 ID=mRNA_M-pyrifera_M_contig87424.20317.1|Name=mRNA_M-pyrifera_M_contig87424.20317.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=672bp|location=Sequence derived from alignment at M-pyrifera_M_contig87424:33..455- (Macrocystis pyrifera P11B4 male)
AGGTTTGAGATCAAGAAATGGTCATCAACTGCGATGTGGAGCTGGAACGT
GGAACAAGACAGATGCGCCATTTGCAGAAACAGTATCTACGAACCCTCTA
TTGAGAATCAGGCATCCAGGTATGTGTTGGAAGCAGGTTTGAGATCAAGA
AATGGTCATCAACTGCGATGTGGAGCTGGAACGTGGAACAAGACAGATGC
GCCATTTGCAGAAACAGTATCTACGAACCCTCTATTGAGAATCAGGCATC
CAGGTATGTGTTGGAAGCTCCTTGCCGACGTTTGTGGGTATTTCTTGGAC
CCTTTCCCCTGCAAACCCTCACCAACATATCTACTGTGTTTTGTTGTTGC
AGTGTGAGCGAAGTGAATGTGGCTTGGGGTGCTTGTAACCATTGTTTCCA
CCTGGAATGCATCTCTCGTTGGCTGAAATCGAACATGGTAGGTGGAATTC
GGGGTGATGGGTGGGTGTAGTCCTTGCCGACGTTTGTGGGTATTTCTTGG
ACCCTTTCCCCTGCAAACCCTCACCAACATATCTACTGTGTTTTGTTGTT
GCAGTGTGAGCGAAGTGAATGTGGCTTGGGGTGCTTGTAACCATTGTTTC
CACCTGGAATGCATCTCTCGTTGGCTGAAATCGAACATGGTAGGTGGAAT
TCGGGGTGATGGGTGGGTGTAG
back to top