mRNA_M-pyrifera_M_contig87374.20306.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87374.20306.1
Unique NamemRNA_M-pyrifera_M_contig87374.20306.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87374.20306.1 vs. uniprot
Match: A0A5A8C8E4_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C8E4_CAFRO)

HSP 1 Score: 141 bits (356), Expect = 2.530e-37
Identity = 65/113 (57.52%), Postives = 89/113 (78.76%), Query Frame = 1
Query:    1 KPQSIETAGAVFGWLSSVLYLSSRLPQVYKNWRRGTVEGLSWLMFTCSFMGNVTSSLGIILRATRKQDWILESPFLPGMLGTIFLDLTILTQVFVYSRRAAERRKKRQDLREA 339
            + +++   G VFGW+SS LYL+SRLPQVYKN++RG+VEGLSWLMF C+F+GN T+ +GI+ R + ++DW  E+PFLPGM+GTI LD TI+ Q F Y+ RA  RR +R+ LR+A
Sbjct:  383 EDRTLGVVGDVFGWISSALYLTSRLPQVYKNYQRGSVEGLSWLMFLCAFLGNTTALIGILPRMSTQEDWASEAPFLPGMMGTIVLDFTIMFQWFWYTARATRRRAERKQLRDA 495          
BLAST of mRNA_M-pyrifera_M_contig87374.20306.1 vs. uniprot
Match: A0A7S1C8F4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C8F4_9STRA)

HSP 1 Score: 128 bits (321), Expect = 6.960e-33
Identity = 63/106 (59.43%), Postives = 77/106 (72.64%), Query Frame = 1
Query:    4 PQSIETAGAVFGWLSSVLYLSSRLPQVYKNWRRGTVEGLSWLMFTCSFMGNVTSSLGIILRATRKQDWILESPFLPGMLGTIFLDLTILTQVFVYSRRAAERRKKR 321
            P+  +  G V GW+SSVLYL+SRLPQ+YKN++RGT +GLSW MF C+FMGNVT  LGI LR     +W+   P+LPG  GT+ LDL IL Q FVY+RR A RR KR
Sbjct:  249 PEWGQHTGVVLGWISSVLYLNSRLPQIYKNFKRGTCDGLSWKMFFCAFMGNVTYVLGIALRTRGWDNWMAVMPWLPGSAGTLGLDLIILVQYFVYNRRRAMRRLKR 354          
BLAST of mRNA_M-pyrifera_M_contig87374.20306.1 vs. uniprot
Match: A0A812QPZ6_9DINO (Laat-1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812QPZ6_9DINO)

HSP 1 Score: 122 bits (305), Expect = 3.720e-30
Identity = 58/112 (51.79%), Postives = 79/112 (70.54%), Query Frame = 1
Query:    4 PQSIETAGAVFGWLSSVLYLSSRLPQVYKNWRRGTVEGLSWLMFTCSFMGNVTSSLGIILRATRKQDWILESPFLPGMLGTIFLDLTILTQVFVYSRRAAERRKKRQDLREA 339
            P++ +T G V G+LSS+LYL+SRLPQ+ KN +R +V GLSWLMF C+FMGNVT+   I +R + K DW+ E+PFLPG  GT+  D TI+ Q   Y+RR   R+  R+  +EA
Sbjct:  346 PKAAKTTGIVMGYLSSILYLNSRLPQIVKNCQRRSVAGLSWLMFFCAFMGNVTTVTAIFMRISSKADWVAEAPFLPGNAGTLVFDFTIMIQYLYYTRRKRARQAARRAWKEA 457          
BLAST of mRNA_M-pyrifera_M_contig87374.20306.1 vs. uniprot
Match: A0A2R5G6Q7_9STRA (Lysosomal amino acid transporter 1-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G6Q7_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.660e-21
Identity = 46/89 (51.69%), Postives = 63/89 (70.79%), Query Frame = 1
Query:   25 GAVFGWLSSVLYLSSRLPQVYKNWRRGTVEGLSWLMFTCSFMGNVTSSLGIILRATRKQDWILESPFLPGMLGTIFLDLTILTQVFVYS 291
            G + GW+S+V+YL+SRLPQ+ KNWRR +VEGLS+LMF C+ MGN T  +G++LR +  +      P+L G LGT+ LD  IL Q + YS
Sbjct:  282 GTLIGWISAVVYLNSRLPQIIKNWRRKSVEGLSFLMFFCAVMGNTTYGMGVLLRDSSWKSIHKALPWLVGSLGTLALDFFILIQFWCYS 370          
BLAST of mRNA_M-pyrifera_M_contig87374.20306.1 vs. uniprot
Match: A0A7S2WIF3_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WIF3_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.560e-20
Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = 1
Query:   13 IETAGAVFGWLSSVLYLSSRLPQVYKNWRRGTVEGLSWLMFTCSFMGNVTSSLGIILRATRKQDWILESPFLPGMLGTIFLDLTILTQVFVYS 291
            ++  G + GW+S+++YL+SR+PQ+ KN +R +VEGLS+LMF C+ MGN T  LG++LR +  +      P+L G LGT+ LD TIL Q + YS
Sbjct:  195 MQDVGVIIGWVSALVYLNSRIPQILKNQKRKSVEGLSFLMFFCAVMGNTTYGLGVLLRDSSWKAIHKALPWLVGSLGTLLLDFTILLQFWYYS 287          
BLAST of mRNA_M-pyrifera_M_contig87374.20306.1 vs. uniprot
Match: A0A8H7UMQ8_9FUNG (Uncharacterized protein n=1 Tax=Mucor plumbeus TaxID=97098 RepID=A0A8H7UMQ8_9FUNG)

HSP 1 Score: 92.8 bits (229), Expect = 2.930e-20
Identity = 42/102 (41.18%), Postives = 67/102 (65.69%), Query Frame = 1
Query:    7 QSIETAGAVFGWLSSVLYLSSRLPQVYKNWRRGTVEGLSWLMFTCSFMGNVTSSLGIILRATRKQDWILESPFLPGMLGTIFLDLTILTQVFVYSRRAAERR 312
            + I+    + GWLS+VLY+ SR+PQ+ KNWR+ + +GLS  MF C+  GN+  S+ I LR+T ++  I+  P++ G LGT+  D+ I  Q +V++RR  + R
Sbjct:  221 KEIQLMPQILGWLSAVLYVGSRVPQLIKNWRQQSTDGLSSGMFVCAVFGNIFFSMSIFLRSTERRYIIVNLPWIIGSLGTVIFDIMIFLQFYVFNRRKLKHR 322          
BLAST of mRNA_M-pyrifera_M_contig87374.20306.1 vs. uniprot
Match: A0A077WSJ2_9FUNG (Uncharacterized protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A077WSJ2_9FUNG)

HSP 1 Score: 92.0 bits (227), Expect = 5.910e-20
Identity = 44/96 (45.83%), Postives = 66/96 (68.75%), Query Frame = 1
Query:   25 GAVFGWLSSVLYLSSRLPQVYKNWRRGTVEGLSWLMFTCSFMGNVTSSLGIILRATRKQDWILES-PFLPGMLGTIFLDLTILTQVFVYSRRAAER 309
            G  FGWL ++LYLSSR+PQ+Y+N+RR + +GLS  +F C+  GN+T +LGI+L   + +  +LE+ P++ G  GT+  D+TI  Q  VYSR   E+
Sbjct:  219 GRFFGWLCALLYLSSRVPQMYRNFRRRSAQGLSMALFLCAAAGNLTYTLGILLNPNQNRQTMLEAIPYILGSAGTLVFDVTIYIQHAVYSRHTEEK 314          
BLAST of mRNA_M-pyrifera_M_contig87374.20306.1 vs. uniprot
Match: A0A0V0J7R0_SCHSO (Lysosomal amino acid transporter 1 n=3 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A0V0J7R0_SCHSO)

HSP 1 Score: 91.7 bits (226), Expect = 1.070e-19
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 1
Query:    4 PQSIETAGAVFGWLSSVLYLSSRLPQVYKNWRRGTVEGLSWLMFTCSFMGNVTSSLGIILRATRKQDWILESPFLPGMLGTIFLDLTILTQVFVYSRR 297
            P  I   G V GW SS++YLSSR PQ+ +NWRRG+ EGLS  +F  + +GN +  L I L +T     +   P++ G LG +FLD+ IL Q +V+ RR
Sbjct:  233 PSPIAYTGYVLGWFSSLMYLSSRFPQILQNWRRGSTEGLSIFLFMFALLGNASYGLQIFLTSTDTLFLLHSLPWILGSLGVLFLDVVILAQFYVFRRR 330          
BLAST of mRNA_M-pyrifera_M_contig87374.20306.1 vs. uniprot
Match: A0A7M3QQH7_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3QQH7_SPIER)

HSP 1 Score: 86.7 bits (213), Expect = 6.720e-19
Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = 1
Query:    4 PQSIETAGAVFGWLSSVLYLSSRLPQVYKNWRRGTVEGLSWLMFTCSFMGNVTSSLGIILRATRKQDWILESPFLPGMLGTIFLDLTILTQVFVYSRR 297
            P  +  AG + GW SS++YLSSR PQ+ +NWRR + EGLS  +F  + +GN +  L I L +T     +   P++ G LG + LDL IL Q +V+ RR
Sbjct:   79 PTPLAYAGYILGWFSSLMYLSSRFPQILQNWRRASTEGLSIFVFMFALIGNASYGLQIFLTSTDTLFLLHSLPWILGSLGVLLLDLVILFQFYVFRRR 176          
BLAST of mRNA_M-pyrifera_M_contig87374.20306.1 vs. uniprot
Match: A0A162QSG9_MUCCL (Uncharacterized protein n=2 Tax=Mucor circinelloides f. lusitanicus TaxID=29924 RepID=A0A162QSG9_MUCCL)

HSP 1 Score: 88.2 bits (217), Expect = 1.230e-18
Identity = 40/102 (39.22%), Postives = 65/102 (63.73%), Query Frame = 1
Query:    7 QSIETAGAVFGWLSSVLYLSSRLPQVYKNWRRGTVEGLSWLMFTCSFMGNVTSSLGIILRATRKQDWILESPFLPGMLGTIFLDLTILTQVFVYSRRAAERR 312
            ++++    + GWLS+VLY+ SR+PQ+ KNWR+ + +GLS  MF C+  GN   +L I LR+T ++  I   P++ G L T+  D+ I  Q +V++RR  + R
Sbjct:  201 ETMQLVPQILGWLSAVLYIGSRVPQLIKNWRQQSTDGLSSGMFVCAVFGNFFFALSIFLRSTERRYIIKNMPWIIGSLATVIFDIMIFLQFYVFNRRKLKHR 302          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87374.20306.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8C8E4_CAFRO2.530e-3757.52Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A7S1C8F4_9STRA6.960e-3359.43Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A812QPZ6_9DINO3.720e-3051.79Laat-1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A2R5G6Q7_9STRA1.660e-2151.69Lysosomal amino acid transporter 1-like n=1 Tax=Ho... [more]
A0A7S2WIF3_9STRA1.560e-2047.31Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A8H7UMQ8_9FUNG2.930e-2041.18Uncharacterized protein n=1 Tax=Mucor plumbeus Tax... [more]
A0A077WSJ2_9FUNG5.910e-2045.83Uncharacterized protein n=2 Tax=Lichtheimia TaxID=... [more]
A0A0V0J7R0_SCHSO1.070e-1944.90Lysosomal amino acid transporter 1 n=3 Tax=Schisto... [more]
A0A7M3QQH7_SPIER6.720e-1942.86Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
A0A162QSG9_MUCCL1.230e-1839.22Uncharacterized protein n=2 Tax=Mucor circinelloid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87374contigM-pyrifera_M_contig87374:28..366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score91.3
Seed ortholog evalue3.2e-16
Seed eggNOG ortholog36080.S2K1Z3
Preferred nameRTC2
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005783,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0007034,GO:0008150,GO:0008509,GO:0008514,GO:0012505,GO:0015075,GO:0015171,GO:0015174,GO:0015318,GO:0015711,GO:0015802,GO:0015849,GO:0016020,GO:0016021,GO:0022857,GO:0031090,GO:0031166,GO:0031224,GO:0031300,GO:0031301,GO:0031310,GO:0034220,GO:0034486,GO:0034487,GO:0034488,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0051179,GO:0051234,GO:0055085,GO:0071627,GO:0071628,GO:0071702,GO:0071705,GO:0098588,GO:0098656,GO:0098805,GO:0098852,GO:1903825,GO:1905039,GO:1990822
EggNOG free text desc.Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins.
EggNOG OGs1GX3Z@112252,38F10@33154,3NY9G@4751,KOG2913@1,KOG2913@2759
COG Functional cat.S
Best tax levelFungi incertae sedis
Best eggNOG OGNA|NA|NA
Exons1
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816782.8078794-CDS-M-pyrifera_M_contig87374:27..3661622816782.8078794-CDS-M-pyrifera_M_contig87374:27..366Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87374 28..366 +
1692278175.6348526-CDS-M-pyrifera_M_contig87374:27..3661692278175.6348526-CDS-M-pyrifera_M_contig87374:27..366Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87374 28..366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87374.20306.1prot_M-pyrifera_M_contig87374.20306.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87374 28..366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87374.20306.1

>prot_M-pyrifera_M_contig87374.20306.1 ID=prot_M-pyrifera_M_contig87374.20306.1|Name=mRNA_M-pyrifera_M_contig87374.20306.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
KPQSIETAGAVFGWLSSVLYLSSRLPQVYKNWRRGTVEGLSWLMFTCSFM
GNVTSSLGIILRATRKQDWILESPFLPGMLGTIFLDLTILTQVFVYSRRA
AERRKKRQDLREA
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mRNA from alignment at M-pyrifera_M_contig87374:28..366+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87374.20306.1 ID=mRNA_M-pyrifera_M_contig87374.20306.1|Name=mRNA_M-pyrifera_M_contig87374.20306.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=339bp|location=Sequence derived from alignment at M-pyrifera_M_contig87374:28..366+ (Macrocystis pyrifera P11B4 male)
AAGCCACAGAGCATTGAGACGGCAGGAGCAGTGTTTGGGTGGTTGTCTTC CGTCCTCTACCTCTCCTCTCGATTGCCACAAGTGTACAAGAACTGGAGGA GAGGAACAGTGGAAGGCTTGTCTTGGCTCATGTTCACGTGCTCTTTTATG GGAAACGTCACTTCTTCACTCGGCATTATTCTCCGTGCCACTCGCAAACA AGACTGGATTCTCGAGTCTCCATTCCTCCCAGGCATGCTAGGGACAATCT TCCTTGACCTCACCATCCTCACCCAAGTCTTCGTCTACTCCAGAAGAGCA GCAGAAAGGCGCAAGAAGAGACAAGACCTCAGAGAAGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87374:28..366+

>mRNA_M-pyrifera_M_contig87374.20306.1 ID=mRNA_M-pyrifera_M_contig87374.20306.1|Name=mRNA_M-pyrifera_M_contig87374.20306.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig87374:28..366+ (Macrocystis pyrifera P11B4 male)
AAGCCACAGAGCATTGAGACGGCAGGAGCAGTGTTTGGGTGGTTGTCTTC
CGTCCTCTACCTCTCCTCTCGATTGCCACAAGTGTACAAGAACTGGAGGA
GAGGAACAGTGGAAGGCTTGTCTTGGCTCATGTTCACGTGCTCTTTTATG
GGAAACGTCACTTCTTCACTCGGCATTATTCTCCGTGCCACTCGCAAACA
AGACTGGATTCTCGAGTCTCCATTCCTCCCAGGCATGCTAGGGACAATCT
TCCTTGACCTCACCATCCTCACCCAAGTCTTCGTCTACTCCAGAAGAGCA
GCAGAAAGGCGCAAGAAGAGACAAGACCTCAGAGAAGCAAAGCCACAGAG
CATTGAGACGGCAGGAGCAGTGTTTGGGTGGTTGTCTTCCGTCCTCTACC
TCTCCTCTCGATTGCCACAAGTGTACAAGAACTGGAGGAGAGGAACAGTG
GAAGGCTTGTCTTGGCTCATGTTCACGTGCTCTTTTATGGGAAACGTCAC
TTCTTCACTCGGCATTATTCTCCGTGCCACTCGCAAACAAGACTGGATTC
TCGAGTCTCCATTCCTCCCAGGCATGCTAGGGACAATCTTCCTTGACCTC
ACCATCCTCACCCAAGTCTTCGTCTACTCCAGAAGAGCAGCAGAAAGGCG
CAAGAAGAGACAAGACCTCAGAGAAGCA
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