mRNA_M-pyrifera_M_contig8737.20305.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8737.20305.1
Unique NamemRNA_M-pyrifera_M_contig8737.20305.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8737.20305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8737contigM-pyrifera_M_contig8737:1936..2583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size648
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8737.20305.1prot_M-pyrifera_M_contig8737.20305.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8737 1960..2382 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816782.751765-UTR-M-pyrifera_M_contig8737:1935..19591622816782.751765-UTR-M-pyrifera_M_contig8737:1935..1959Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8737 1936..1959 +
1692278175.5983927-UTR-M-pyrifera_M_contig8737:1935..19591692278175.5983927-UTR-M-pyrifera_M_contig8737:1935..1959Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8737 1936..1959 +
1622816782.7774334-UTR-M-pyrifera_M_contig8737:2382..25831622816782.7774334-UTR-M-pyrifera_M_contig8737:2382..2583Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8737 2383..2583 +
1692278175.6234565-UTR-M-pyrifera_M_contig8737:2382..25831692278175.6234565-UTR-M-pyrifera_M_contig8737:2382..2583Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig8737 2383..2583 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816782.7631783-CDS-M-pyrifera_M_contig8737:1959..23821622816782.7631783-CDS-M-pyrifera_M_contig8737:1959..2382Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8737 1960..2382 +
1692278175.612708-CDS-M-pyrifera_M_contig8737:1959..23821692278175.612708-CDS-M-pyrifera_M_contig8737:1959..2382Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8737 1960..2382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8737.20305.1

>prot_M-pyrifera_M_contig8737.20305.1 ID=prot_M-pyrifera_M_contig8737.20305.1|Name=mRNA_M-pyrifera_M_contig8737.20305.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=141bp
MSGWIGWVNGRTVRWLDGIWCCTYKEKKTKNAPGRVLARDFAREEPLFFL
FFFRYFLFRYIPPGKERKRIRRGMREKPSERGGFKRVVSKKNYLRDTVYG
IYGGCEGVCAFLRYSAVSYVMHLSYLYTYIHLNIYIYLYI*
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mRNA from alignment at M-pyrifera_M_contig8737:1936..2583+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8737.20305.1 ID=mRNA_M-pyrifera_M_contig8737.20305.1|Name=mRNA_M-pyrifera_M_contig8737.20305.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig8737:1936..2583+ (Macrocystis pyrifera P11B4 male)
CACAGGGGTGTGGATGTTGGATGGATGAGCGGATGGATTGGATGGGTGAA
TGGACGGACGGTCCGATGGCTGGATGGAATTTGGTGCTGTACATACAAGG
AGAAAAAAACAAAAAACGCCCCTGGGCGCGTTCTCGCTCGTGATTTTGCG
AGGGAGGAGCCGCTTTTCTTTCTTTTTTTTTTTCGGTACTTTTTATTCCG
CTATATACCACCAGGAAAGGAAAGGAAAAGGATACGTAGAGGAATGAGGG
AAAAGCCGAGCGAGCGAGGCGGGTTTAAGCGTGTGGTATCAAAGAAGAAC
TATCTCAGGGATACGGTATACGGCATATACGGGGGATGTGAGGGAGTGTG
TGCCTTCTTGAGGTACTCTGCCGTTTCCTACGTTATGCATTTATCTTATC
TATATACGTACATACACTTGAATATATATATTTATTTATATATATAAATG
TATCGTAGAGGTAAGTAAGGTAAGGGGAGGGGAGGCGATGGGCTGGATGC
AGTTGGAGAACCGGGCTGTCGTTGTTGGTTGGTTGCGAGCGGGCTACCAC
TACTACTGCTACTTACTACCGGAAGTTTTGATAGTTTCCTCATGATTATG
TGGTCACGATGACGTCTCCTTCGCCGTGGTACGTAATATTCGGAGCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8737:1936..2583+

>mRNA_M-pyrifera_M_contig8737.20305.1 ID=mRNA_M-pyrifera_M_contig8737.20305.1|Name=mRNA_M-pyrifera_M_contig8737.20305.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=846bp|location=Sequence derived from alignment at M-pyrifera_M_contig8737:1936..2583+ (Macrocystis pyrifera P11B4 male)
ATGAGCGGATGGATTGGATGGGTGAATGGACGGACGGTCCGATGGCTGGA
TGGAATTTGGTGCTGTACATACAAGGAGAAAAAAACAAAAAACGCCCCTG
GGCGCGTTCTCGCTCGTGATTTTGCGAGGGAGGAGCCGCTTTTCTTTCTT
TTTTTTTTTCGGTACTTTTTATTCCGCTATATACCACCAGGAAAGGAAAG
GAAAAGGATACGTAGAGGAATGAGGGAAAAGCCGAGCGAGCGAGGCGGGT
TTAAGCGTGTGGTATCAAAGAAGAACTATCTCAGGGATACGGTATACGGC
ATATACGGGGGATGTGAGGGAGTGTGTGCCTTCTTGAGGTACTCTGCCGT
TTCCTACGTTATGCATTTATCTTATCTATATACGTACATACACTTGAATA
TATATATTTATTTATATATATAAATGAGCGGATGGATTGGATGGGTGAAT
GGACGGACGGTCCGATGGCTGGATGGAATTTGGTGCTGTACATACAAGGA
GAAAAAAACAAAAAACGCCCCTGGGCGCGTTCTCGCTCGTGATTTTGCGA
GGGAGGAGCCGCTTTTCTTTCTTTTTTTTTTTCGGTACTTTTTATTCCGC
TATATACCACCAGGAAAGGAAAGGAAAAGGATACGTAGAGGAATGAGGGA
AAAGCCGAGCGAGCGAGGCGGGTTTAAGCGTGTGGTATCAAAGAAGAACT
ATCTCAGGGATACGGTATACGGCATATACGGGGGATGTGAGGGAGTGTGT
GCCTTCTTGAGGTACTCTGCCGTTTCCTACGTTATGCATTTATCTTATCT
ATATACGTACATACACTTGAATATATATATTTATTTATATATATAA
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