mRNA_M-pyrifera_M_contig87365.20302.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87365.20302.1
Unique NamemRNA_M-pyrifera_M_contig87365.20302.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87365.20302.1 vs. uniprot
Match: UPI001E534A8B (phytanoyl-CoA dioxygenase family protein n=1 Tax=Catenulispora pinisilvae TaxID=2705253 RepID=UPI001E534A8B)

HSP 1 Score: 122 bits (305), Expect = 3.890e-32
Identity = 66/141 (46.81%), Postives = 81/141 (57.45%), Query Frame = 1
Query:    4 GSFGDPPLYKVNLVSRGRALLLLMLYTDVDLQDAPTRIRVGSHAEVARALARLGDDVTFIPERH-APDVLDLPIDHAVGDAGTVYLCHPFLVHAASWPHDGDGPRVIGQPCIHHPQGEWLGGFDYDSDRDAPVLTAVRGAL 423
            G+ G P  Y+ N+ SRGR LL L+L+ DV  QDAPTR+  GSH  V   LA  G+D T     +  P VL  P+ HA G AG V+LCHPF+VH A+WPH G  PR+I QP +H   G     F  D    APV  A+   L
Sbjct:   59 GAAGGP--YRCNVRSRGRGLLALLLFGDVGPQDAPTRLVSGSHLYVPEFLAPYGEDGTVSDGCYWRPSVLCRPVVHATGQAGDVFLCHPFIVHTATWPHTGTAPRMIAQPAVHVRDG-----FAIDGSDSAPVARAIVAGL 192          
BLAST of mRNA_M-pyrifera_M_contig87365.20302.1 vs. uniprot
Match: A0A358SPA1_9ACTN (Phytanoyl-CoA dioxygenase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A358SPA1_9ACTN)

HSP 1 Score: 123 bits (308), Expect = 5.730e-32
Identity = 67/142 (47.18%), Postives = 81/142 (57.04%), Query Frame = 1
Query:    1 DGSFGDPPLYKVNLVSRGRALLLLMLYTDVDLQDAPTRIRVGSHAEVARALARLGDDVTFIPERH-APDVLDLPIDHAVGDAGTVYLCHPFLVHAASWPHDGDGPRVIGQPCIHHPQGEWLGGFDYDSDRDAPVLTAVRGAL 423
            +GS+  P  Y VN+ SR R LL L+L+TDV L +APTR+  GSH  V   LA  G+  T        P VL  P+ HA G AG V+LCHPFLVH A+WPH G  PR+I QP +H       GGF  D    +PV  AV   L
Sbjct:  112 EGSYDGPGGYWVNVRSRARGLLALLLFTDVGLDEAPTRLVCGSHLYVPEFLAPYGEAGTSADAVFWRPSVLCRPVAHAAGRAGDVFLCHPFLVHTATWPHRGSTPRMIAQPAVHV-----RGGFALDGSDPSPVARAVVAGL 248          
BLAST of mRNA_M-pyrifera_M_contig87365.20302.1 vs. uniprot
Match: A0A4R2C3J4_9ACTN (Phytanoyl-CoA dioxygenase PhyH n=3 Tax=Kribbella TaxID=182639 RepID=A0A4R2C3J4_9ACTN)

HSP 1 Score: 120 bits (300), Expect = 1.060e-30
Identity = 71/138 (51.45%), Postives = 82/138 (59.42%), Query Frame = 1
Query:   28 YKVNLVSRGRALLLLMLYTDVDLQDAPTRIRVGSHAEVARALARLGDDVTFIPERHAPDVL----DLPIDHAVGDAGTVYLCHPFLVHAASWPHDGDGPRVIGQPCIHHPQGEWLGGFDYDSDRDA--PVLTAVRGAL 423
            ++ N+ SR R LL + L TDV   DAPTRIRVGSH + AR LA  GD+    P    P V+    D P+  A G AG VYLCHPFLVHAASWPH G GPR+I QP IH      L  F   +DR A  PV  A+  AL
Sbjct:  129 WRANIRSRERGLLAIFLLTDVGPDDAPTRIRVGSHVDAARVLAPAGDE-GLAPAEAGPPVVQASADRPVTEATGAAGDVYLCHPFLVHAASWPHRGTGPRMITQPGIH-----LLEPFPL-ADRSAAYPVEAAILDAL 259          
BLAST of mRNA_M-pyrifera_M_contig87365.20302.1 vs. uniprot
Match: A0A4R4P3T2_9ACTN (Phytanoyl-CoA dioxygenase n=1 Tax=Kribbella albertanoniae TaxID=1266829 RepID=A0A4R4P3T2_9ACTN)

HSP 1 Score: 117 bits (294), Expect = 7.910e-30
Identity = 67/140 (47.86%), Postives = 80/140 (57.14%), Query Frame = 1
Query:    7 SFGDPPLYKVNLVSRGRALLLLMLYTDVDLQDAPTRIRVGSHAEVARALARLGDDVTFIPERHAPDV---LDLPIDHAVGDAGTVYLCHPFLVHAASWPHDGDGPRVIGQPCIHHPQGEWLGGFDYDSDRDAPVLTAVRG 417
            S+ D   ++ N+ SR R LL L L TDV   DAPTRIRVGSHA+ AR LA  GDD   + E   P V    D  +  A G AG VYLCHPFLVHAASWPH G  PR+I QP +   +   L         +A +L A+ G
Sbjct:  120 SYWDGTDWRANIRSRERGLLSLFLLTDVGADDAPTRIRVGSHADAARVLAPAGDDGLTMAESGPPIVEASADRRVVEATGSAGDVYLCHPFLVHAASWPHRGISPRIITQPGVALLEPFTLTDPTAAHPVEAAILAAISG 259          
BLAST of mRNA_M-pyrifera_M_contig87365.20302.1 vs. uniprot
Match: A0A0H5NI67_NOCFR (Phytanoyl-CoA dioxygenase (PhyH) n=13 Tax=Nocardia TaxID=1817 RepID=A0A0H5NI67_NOCFR)

HSP 1 Score: 117 bits (293), Expect = 1.140e-29
Identity = 70/144 (48.61%), Postives = 85/144 (59.03%), Query Frame = 1
Query:    1 DGSFGDPPLYKVNLVSRGRALLLLMLYTDVDLQDAPTRIRVGSHAEVARALARLGD---DVTFIPERHAPDVLDLPIDHAVGDAGTVYLCHPFLVHAASWPHDGDGPRVIGQPCIHHPQGEWLGGFDYDSDRDAPVLTAVRGAL 423
            D   GD   ++ N+VSR RALL+L L+TDV   DAPTR+RVGSH +VAR L R GD   D   +  R A    D  I HA G AG VYLCHPFLVHA   P+ G  PR++GQP +       + G + D    APV  A+R AL
Sbjct:  119 DSDPGDYLTWRANVVSRDRALLMLFLFTDVGEADAPTRLRVGSHRDVARILHREGDTGLDARDLAARAAAATADREIAHATGAAGDVYLCHPFLVHAGQ-PNRGTRPRILGQPKLAPRARFRIDGAETDL---APVEQAIRRAL 258          
BLAST of mRNA_M-pyrifera_M_contig87365.20302.1 vs. uniprot
Match: A0A7G3A5N2_9PROT (Phytanoyl-CoA dioxygenase n=1 Tax=Hyphomonas sp. TaxID=87 RepID=A0A7G3A5N2_9PROT)

HSP 1 Score: 116 bits (291), Expect = 2.590e-29
Identity = 71/155 (45.81%), Postives = 90/155 (58.06%), Query Frame = 1
Query:    1 DGSFGDPPLY---KVNLVSRGRALLLLMLYTDVDLQDAPTRIRVGSHAEVARALARLGDDV---------TFIPERHAPDVLDLPIDHAVGDAGTVYLCHPFLVHAASWPHDGDGPRVIGQPCIHHPQGEWLGGFDYDSDRDAPVLTAVRGALIK 429
            D SFGD P +   + N+ S+GRALL+L L+TD    DAPTRIR GSH ++AR LA  G+D           F    H P+VL      AVG+AGTVYLCHPFLVHAA   H G  PR++ QP +   +   L   D   +R +PV  A+R AL +
Sbjct:  119 DVSFGDSPDFMDWRANVNSKGRALLMLFLFTDTGPDDAPTRIRAGSHKDIARRLAEAGEDGLALRELAADVFSDSSHRPEVL------AVGEAGTVYLCHPFLVHAAQR-HRGAAPRILAQPPLLPREAFDLARRD---ERYSPVERAIRDALAE 263          
BLAST of mRNA_M-pyrifera_M_contig87365.20302.1 vs. uniprot
Match: UPI0003A97E94 (phytanoyl-CoA dioxygenase family protein n=1 Tax=Actinopolymorpha alba TaxID=533267 RepID=UPI0003A97E94)

HSP 1 Score: 116 bits (290), Expect = 3.340e-29
Identity = 65/143 (45.45%), Postives = 83/143 (58.04%), Query Frame = 1
Query:    7 SFGDPPLYKVNLVSRGRALLLLMLYTDVDLQDAPTRIRVGSHAEVARALARLGDDVTFIPERHAPDVLDL----PIDHAVGDAGTVYLCHPFLVHAASWPHDGDGPRVIGQPCIHHPQGEWLGGFDYDSDRDAPVLTAVRGAL 423
            SF     ++ N+ SR R LL L L+TDV L+DAPTR+RVGSH + AR L   G+D   +    A  +L+     P+ H  G AG VYLCHPFLVHAASWPH G  PR++ QP +   +   L     D +R  PV  A+  AL
Sbjct:  122 SFQSGDTWRTNIRSRDRGLLALFLFTDVGLRDAPTRVRVGSHTDAARVLEAAGEDGLDLAS--AGPLLEASAARPVAHVTGAAGDVYLCHPFLVHAASWPHRGTTPRIMAQPGVALLEPFRLA----DRERAYPVERAILSAL 258          
BLAST of mRNA_M-pyrifera_M_contig87365.20302.1 vs. uniprot
Match: UPI00198820BA (Phytanoyl-CoA dioxygenase family protein n=1 Tax=Ferruginibacter sp. TaxID=1940288 RepID=UPI00198820BA)

HSP 1 Score: 116 bits (290), Expect = 3.650e-29
Identity = 65/139 (46.76%), Postives = 87/139 (62.59%), Query Frame = 1
Query:   13 GDPPLYKVNLVSRGRALLLLMLYTDVDLQDAPTRIRVGSHAEVARALARLGD-DVTFIP-ERHAPDVLDLPIDHAVGDAGTVYLCHPFLVHAASWPHDGDGPRVIGQPCIHHPQGEWLGGFDYDSDRDAPVLTAVRGAL 423
            GD   +++N+ SRGRALL+L L++DV  +DAPTRI VGSH++V R L   GD  ++F+   +     LD P+  A G+AGTVYLCHPFL+HAA  PH G  PR + QP +H  +   L   D    R +PV  A+R  L
Sbjct:  122 GDDGSWRLNVTSRGRALLMLFLFSDVGAEDAPTRILVGSHSDVPRLLKPAGDAGLSFLELAQELNQSLDRPVAFATGEAGTVYLCHPFLIHAAQ-PHRGSTPRFMAQPPLHPAEPLRLHRND---GRYSPVEQAIRSGL 256          
BLAST of mRNA_M-pyrifera_M_contig87365.20302.1 vs. uniprot
Match: UPI001B81974F (phytanoyl-CoA dioxygenase family protein n=1 Tax=Actinospica sp. MGRD01-02 TaxID=2828514 RepID=UPI001B81974F)

HSP 1 Score: 115 bits (288), Expect = 5.410e-29
Identity = 67/139 (48.20%), Postives = 81/139 (58.27%), Query Frame = 1
Query:   16 DPPLYKVNLVSRGRALLLLMLYTDVDLQDAPTRIRVGSHAEVARALARLGD---DVTFIPERHAPDVLDLPIDHAVGDAGTVYLCHPFLVHAASWPHDGDGPRVIGQPCIHHPQGEWLGGFDYDSDRDAPVLTAVRGAL 423
            DP  ++VNL SRGRALL+L L+++V   DAPTRIRVGSH  V R L   G+    +  I +R A    DLP+  A G  G VYLCHPFLVHAA  PH G  PR + QP +        G   Y  D D+PV  A+R  L
Sbjct:  120 DPMSWRVNLTSRGRALLMLFLFSEVGENDAPTRIRVGSHLAVPRLLESAGEAGLPMREISQRAAAATQDLPVALATGRPGDVYLCHPFLVHAAQ-PHRGTRPRFLAQPPLDP------GPTPYSVDGDSPVERAIRLGL 251          
BLAST of mRNA_M-pyrifera_M_contig87365.20302.1 vs. uniprot
Match: A0A8I1UM46_9SPHN (Phytanoyl-CoA dioxygenase n=1 Tax=Altererythrobacter sp. TaxID=1872480 RepID=A0A8I1UM46_9SPHN)

HSP 1 Score: 114 bits (285), Expect = 1.930e-28
Identity = 69/149 (46.31%), Postives = 90/149 (60.40%), Query Frame = 1
Query:    1 DGSFG-DPPLY---KVNLVSRGRALLLLMLYTDVDLQDAPTRIRVGSHAEVARALARLGDDVTFIPERHAPDVLD---LPIDHAVGDAGTVYLCHPFLVHAASWPHDGDGPRVIGQPCIHHPQGEWLGGFDYDSDRDAPVLTAVRGALI 426
            D SFG D P +   ++NL SRGRALL+L L++D+ + DAPTRIR GS   +AR L   G++   + E  A    +   LP   A G+AGTVYLCHPFLVH+A   H GD PR + QP +  P+G    G  Y  D   PV+ AVR A++
Sbjct:  120 DMSFGTDSPDFMEWRINLHSRGRALLMLFLFSDIGIDDAPTRIRCGSQRTIARQLISAGEEGLTLRELAATGFSESAHLPEALATGEAGTVYLCHPFLVHSAQ-SHRGDTPRFLAQPPLQ-PRGR--NGIAYGDDAMLPVVRAVREAIV 264          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87365.20302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E534A8B3.890e-3246.81phytanoyl-CoA dioxygenase family protein n=1 Tax=C... [more]
A0A358SPA1_9ACTN5.730e-3247.18Phytanoyl-CoA dioxygenase n=1 Tax=Actinomycetia ba... [more]
A0A4R2C3J4_9ACTN1.060e-3051.45Phytanoyl-CoA dioxygenase PhyH n=3 Tax=Kribbella T... [more]
A0A4R4P3T2_9ACTN7.910e-3047.86Phytanoyl-CoA dioxygenase n=1 Tax=Kribbella albert... [more]
A0A0H5NI67_NOCFR1.140e-2948.61Phytanoyl-CoA dioxygenase (PhyH) n=13 Tax=Nocardia... [more]
A0A7G3A5N2_9PROT2.590e-2945.81Phytanoyl-CoA dioxygenase n=1 Tax=Hyphomonas sp. T... [more]
UPI0003A97E943.340e-2945.45phytanoyl-CoA dioxygenase family protein n=1 Tax=A... [more]
UPI00198820BA3.650e-2946.76Phytanoyl-CoA dioxygenase family protein n=1 Tax=F... [more]
UPI001B81974F5.410e-2948.20phytanoyl-CoA dioxygenase family protein n=1 Tax=A... [more]
A0A8I1UM46_9SPHN1.930e-2846.31Phytanoyl-CoA dioxygenase n=1 Tax=Altererythrobact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87365contigM-pyrifera_M_contig87365:398..832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score119.8
Seed ortholog evalue1.1e-24
Seed eggNOG ortholog1120950.KB892796_gene2274
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Phytanoyl-CoA dioxygenase (PhyH)
EggNOG OGs2DB9K@1,2IB4R@201174,2Z7XA@2
COG Functional cat.S
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size435
Cds size435
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816782.6481426-CDS-M-pyrifera_M_contig87365:397..8321622816782.6481426-CDS-M-pyrifera_M_contig87365:397..832Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87365 398..832 -
1692278175.5558414-CDS-M-pyrifera_M_contig87365:397..8321692278175.5558414-CDS-M-pyrifera_M_contig87365:397..832Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87365 398..832 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87365.20302.1prot_M-pyrifera_M_contig87365.20302.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87365 398..832 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87365.20302.1

>prot_M-pyrifera_M_contig87365.20302.1 ID=prot_M-pyrifera_M_contig87365.20302.1|Name=mRNA_M-pyrifera_M_contig87365.20302.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
DGSFGDPPLYKVNLVSRGRALLLLMLYTDVDLQDAPTRIRVGSHAEVARA
LARLGDDVTFIPERHAPDVLDLPIDHAVGDAGTVYLCHPFLVHAASWPHD
GDGPRVIGQPCIHHPQGEWLGGFDYDSDRDAPVLTAVRGALIKN*
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mRNA from alignment at M-pyrifera_M_contig87365:398..832-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87365.20302.1 ID=mRNA_M-pyrifera_M_contig87365.20302.1|Name=mRNA_M-pyrifera_M_contig87365.20302.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=435bp|location=Sequence derived from alignment at M-pyrifera_M_contig87365:398..832- (Macrocystis pyrifera P11B4 male)
GACGGCAGTTTCGGGGATCCCCCGCTCTACAAGGTCAACCTGGTGTCTCG CGGCCGAGCACTACTCCTCTTGATGCTCTATACCGACGTCGACCTGCAGG ATGCGCCAACCCGTATACGTGTCGGTTCGCATGCGGAGGTTGCGCGTGCG CTCGCACGATTGGGCGACGACGTGACCTTCATTCCAGAGCGTCACGCTCC GGACGTCCTCGATCTTCCCATCGACCACGCCGTTGGCGATGCGGGAACCG TCTACCTCTGTCACCCCTTTCTGGTTCACGCGGCGAGCTGGCCGCACGAT GGAGACGGCCCGCGCGTCATTGGACAACCGTGCATTCATCATCCCCAAGG CGAGTGGTTGGGCGGCTTCGACTACGACTCGGATCGTGATGCTCCGGTGT TGACCGCCGTCCGCGGCGCGCTCATCAAGAACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87365:398..832-

>mRNA_M-pyrifera_M_contig87365.20302.1 ID=mRNA_M-pyrifera_M_contig87365.20302.1|Name=mRNA_M-pyrifera_M_contig87365.20302.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig87365:398..832- (Macrocystis pyrifera P11B4 male)
GACGGCAGTTTCGGGGATCCCCCGCTCTACAAGGTCAACCTGGTGTCTCG
CGGCCGAGCACTACTCCTCTTGATGCTCTATACCGACGTCGACCTGCAGG
ATGCGCCAACCCGTATACGTGTCGGTTCGCATGCGGAGGTTGCGCGTGCG
CTCGCACGATTGGGCGACGACGTGACCTTCATTCCAGAGCGTCACGCTCC
GGACGTCCTCGATCTTCCCATCGACCACGCCGTTGGCGATGCGGGAACCG
TCTACCTCTGTCACCCCTTTCTGGTTCACGCGGCGAGCTGGCCGCACGAT
GGAGACGGCCCGCGCGTCATTGGACAACCGTGCATTCATCATCCCCAAGG
CGAGTGGTTGGGCGGCTTCGACTACGACTCGGATCGTGATGCTCCGGTGT
TGACCGCCGTCCGCGGCGCGCTCATCAAGAACTGAGACGGCAGTTTCGGG
GATCCCCCGCTCTACAAGGTCAACCTGGTGTCTCGCGGCCGAGCACTACT
CCTCTTGATGCTCTATACCGACGTCGACCTGCAGGATGCGCCAACCCGTA
TACGTGTCGGTTCGCATGCGGAGGTTGCGCGTGCGCTCGCACGATTGGGC
GACGACGTGACCTTCATTCCAGAGCGTCACGCTCCGGACGTCCTCGATCT
TCCCATCGACCACGCCGTTGGCGATGCGGGAACCGTCTACCTCTGTCACC
CCTTTCTGGTTCACGCGGCGAGCTGGCCGCACGATGGAGACGGCCCGCGC
GTCATTGGACAACCGTGCATTCATCATCCCCAAGGCGAGTGGTTGGGCGG
CTTCGACTACGACTCGGATCGTGATGCTCCGGTGTTGACCGCCGTCCGCG
GCGCGCTCATCAAGAACTGA
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