mRNA_M-pyrifera_M_contig87361.20299.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87361.20299.1
Unique NamemRNA_M-pyrifera_M_contig87361.20299.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87361.20299.1 vs. uniprot
Match: UPI001109A977 (restriction endonuclease n=1 Tax=Aliifodinibius saliphilus TaxID=1920650 RepID=UPI001109A977)

HSP 1 Score: 266 bits (681), Expect = 2.700e-86
Identity = 134/189 (70.90%), Postives = 162/189 (85.71%), Query Frame = 1
Query:   79 FIEEEREIERRRQEAHEQRVKTDAVQQALQESAKEYFELLNSEDPQGRGYKLEKILRGLFELFDLDPRASFRVVGEQIDGAFSFEGTDYLLEAKWQKEPVRASDLDSLAGKLNRKLKNTLGLYLSINGYSEDGVHAHSSGRRLTILMDGSDLMAVLEGRIDLLQLLLRKRRVAAQTGNIYLKVHEILTG 645
             +EEE+EIERRR+EAH++ ++T AV++ L+E  K Y+ELL+S+DPQ RGY+LE IL+ LFELFDLDP+ASF++  EQIDGAF+FE TDYL E KWQ  PV A DLDSLAGKL+RKL+NTLGL+LSING+S+D V  HSSGR L ILMDGSDLMAVLEGRIDL++LLLRKRR AAQ GNIYL++HEIL G
Sbjct:  124 ILEEEKEIERRREEAHQKMMETTAVKEKLKELKKVYYELLSSDDPQQRGYQLETILKDLFELFDLDPKASFKIKAEQIDGAFTFENTDYLFECKWQNNPVNAQDLDSLAGKLSRKLENTLGLFLSINGFSQDAVEVHSSGRSLMILMDGSDLMAVLEGRIDLIKLLLRKRRAAAQKGNIYLQIHEILVG 312          
BLAST of mRNA_M-pyrifera_M_contig87361.20299.1 vs. uniprot
Match: UPI0019033DDE (restriction endonuclease n=1 Tax=Thiocystis violacea TaxID=13725 RepID=UPI0019033DDE)

HSP 1 Score: 260 bits (665), Expect = 5.220e-84
Identity = 137/211 (64.93%), Postives = 167/211 (79.15%), Query Frame = 1
Query:    7 GEEKAAEARAAVEALHGQISGLEAFIEEEREIERRRQEAHEQRVKTDAVQQALQESAKEYFELLNSEDPQGRGYKLEKILRGLFELFDLDPRASFRVVGEQIDGAFSFEGTDYLLEAKWQKEPVRASDLDSLAGKLNRKLKNTLGLYLSINGYSEDGVHAHSSGRRLTILMDGSDLMAVLEGRIDLLQLLLRKRRVAAQTGNIYLKVHEIL 639
            GE+KA        AL  Q+ G +   +E+++            +K +AVQQ L+   KE+F+L++SE+PQ RG+ LEKIL+GLF LFDLDP+ASFR+ GEQ+DGAFSFEGTDYLLEAKWQK+ V A DLD +AGKL+RKL+NTLGL+LSING+SED V AHSSGRRL ILMDGSDLMAVLEGRIDL+QLLLRKRR AA+TGNIYL++HEIL
Sbjct:   94 GEKKAXXXXXXXXALRAQLRGYQDIEQEQKQAXXXXXXXXXXLMKVNAVQQELESLKKEFFDLVSSENPQQRGFNLEKILKGLFNLFDLDPKASFRITGEQVDGAFSFEGTDYLLEAKWQKDLVAAKDLDGMAGKLSRKLENTLGLFLSINGFSEDAVKAHSSGRRLVILMDGSDLMAVLEGRIDLVQLLLRKRRKAAETGNIYLRIHEIL 304          
BLAST of mRNA_M-pyrifera_M_contig87361.20299.1 vs. uniprot
Match: A0A7V1ZSS9_9BACT (Mrr_cat domain-containing protein n=1 Tax=candidate division Zixibacteria bacterium TaxID=2053527 RepID=A0A7V1ZSS9_9BACT)

HSP 1 Score: 255 bits (652), Expect = 4.860e-82
Identity = 138/213 (64.79%), Postives = 167/213 (78.40%), Query Frame = 1
Query:    1 DAGEEKAAEARAAVEALHGQISGLEAFIEEEREIERRRQEAHEQRVKTDAVQQALQESAKEYFELLNSEDPQGRGYKLEKILRGLFELFDLDPRASFRVVGEQIDGAFSFEGTDYLLEAKWQKEPVRASDLDSLAGKLNRKLKNTLGLYLSINGYSEDGVHAHSSGRRLTILMDGSDLMAVLEGRIDLLQLLLRKRRVAAQTGNIYLKVHEIL 639
            D G++K   A+ AV AL  Q  G +  +EE +++E RR+ AH++ ++  AVQQ L E + EY  LL S +P  RGY+LEKILR LFE+FDLDP+ASF++ GEQIDGAFSFE TDYLLEAKWQK PV A D+DSL GKL+RKL NTLGL++SING+++D V A SSGRRL ILMDGSDLMAVLE RIDL QLLLRKRR AA+TGNIYL+ HE L
Sbjct:   92 DDGKKKETLAKEAVSALRKQFVGHQQLVEEIKQMELRRERAHKKSMQIQAVQQKLNELSSEYALLLGSTEPNKRGYRLEKILRELFEIFDLDPKASFKITGEQIDGAFSFEMTDYLLEAKWQKSPVAARDMDSLTGKLSRKLDNTLGLFISINGFAQDSVKAVSSGRRLIILMDGSDLMAVLEARIDLGQLLLRKRRNAAETGNIYLRFHEFL 304          
BLAST of mRNA_M-pyrifera_M_contig87361.20299.1 vs. uniprot
Match: A0A3A9JSQ5_9THEO (Uncharacterized protein n=1 Tax=Thermoanaerobacteraceae bacterium SP2 TaxID=2292448 RepID=A0A3A9JSQ5_9THEO)

HSP 1 Score: 252 bits (644), Expect = 8.170e-81
Identity = 133/213 (62.44%), Postives = 169/213 (79.34%), Query Frame = 1
Query:    1 DAGEEKAAEARAAVEALHGQISGLEAFIEEEREIERRRQEAHEQRVKTDAVQQALQESAKEYFELLNSEDPQGRGYKLEKILRGLFELFDLDPRASFRVVGEQIDGAFSFEGTDYLLEAKWQKEPVRASDLDSLAGKLNRKLKNTLGLYLSINGYSEDGVHAHSSGRRLTILMDGSDLMAVLEGRIDLLQLLLRKRRVAAQTGNIYLKVHEIL 639
            D G+EKA +A+ +V AL       +  ++E++EIE RRQ A E R+K   +   L+E  K ++EL++S+D Q RGY+LEKI++ LF LFDLDP+ASF++ GEQIDGAF+FE TDYL E KWQKE V   +LD+ +GKL+RKL NTLGL+L++NG+SED V AHS+GRRL ILMDGSDLMAVLEGRIDL+QLLLRKRR AAQTGNIYL++HEIL
Sbjct:   93 DDGKEKARKAKESVLALSKLYKIHDDIVQEQKEIEARRQVAFEMRMKNKGISDKLEELNKVFYELISSDDSQARGYQLEKIMKELFVLFDLDPKASFKIQGEQIDGAFTFENTDYLFEGKWQKELVGIQELDAFSGKLSRKLDNTLGLFLAVNGFSEDAVKAHSTGRRLMILMDGSDLMAVLEGRIDLIQLLLRKRRHAAQTGNIYLRLHEIL 305          
BLAST of mRNA_M-pyrifera_M_contig87361.20299.1 vs. uniprot
Match: A0A6H9I432_9BACT (Uncharacterized protein n=1 Tax=Chlorobi bacterium TaxID=2268192 RepID=A0A6H9I432_9BACT)

HSP 1 Score: 251 bits (642), Expect = 1.920e-80
Identity = 129/215 (60.00%), Postives = 169/215 (78.60%), Query Frame = 1
Query:    1 DAGEEKAAEARAAVEALHGQISGLEAFIEEEREIERRRQEAHEQRVKTDAVQQALQESAKEYFELLNSEDPQGRGYKLEKILRGLFELFDLDPRASFRVVGEQIDGAFSFEGTDYLLEAKWQKEPVRASDLDSLAGKLNRKLKNTLGLYLSINGYSEDGVHAHSSGRRLTILMDGSDLMAVLEGRIDLLQLLLRKRRVAAQTGNIYLKVHEILTG 645
            D G+EKA  A+ +VEAL  Q+ G +  IE++R+ E RR +A+E+ ++   VQ+ L E   E+++L+ S +PQ RG++LEKI++ LF LFDLDP+ASF++ GEQIDG F+FE  D+L E KWQ++ V   DLD+ +GKL RKL NTLGL+LSING+S+D V  HS+GRRL ILMDGSD+M VLEGRIDLLQLLLRKRR A+QTGNIYLK+HEI+TG
Sbjct:   95 DDGKEKAKIAKTSVEALRQQMKGHQDLIEQQRQQEERRAKAYEKTLQVKGVQERLDEIKSEFYKLVGSTNPQTRGFQLEKIIKDLFTLFDLDPKASFKITGEQIDGGFTFENVDFLFEGKWQQDLVSIQDLDAFSGKLTRKLDNTLGLFLSINGFSDDAVKTHSTGRRLMILMDGSDIMGVLEGRIDLLQLLLRKRRHASQTGNIYLKLHEIITG 309          
BLAST of mRNA_M-pyrifera_M_contig87361.20299.1 vs. uniprot
Match: A0A7V6Q2S3_9FIRM (Uncharacterized protein n=1 Tax=Thermoanaerobacterales bacterium TaxID=2304039 RepID=A0A7V6Q2S3_9FIRM)

HSP 1 Score: 245 bits (626), Expect = 3.790e-79
Identity = 131/213 (61.50%), Postives = 167/213 (78.40%), Query Frame = 1
Query:    1 DAGEEKAAEARAAVEALHGQISGLEAFIEEEREIERRRQEAHEQRVKTDAVQQALQESAKEYFELLNSEDPQGRGYKLEKILRGLFELFDLDPRASFRVVGEQIDGAFSFEGTDYLLEAKWQKEPVRASDLDSLAGKLNRKLKNTLGLYLSINGYSEDGVHAHSSGRRLTILMDGSDLMAVLEGRIDLLQLLLRKRRVAAQTGNIYLKVHEIL 639
            D G+EKA +A+ +V AL       +  ++E++EIE RRQ A E R+K   V   L+E  K ++ L++S+D + RGY+LEKI++ LF LFDLDP+ASF++ GEQIDGAF+FE TDYL E KWQKE V   +LD+ +GKL+RKL NTLGL+L++NG+SED V AHS+GRRL ILMDGSDLMAVLE RIDL+QLLLRKRR AAQTGNIYL++HEIL
Sbjct:   17 DDGKEKARKAKESVLALSKLYKIHDDIVQEQKEIEARRQVAFEMRMKNKGVSDKLEELNKVFYGLISSDDLRARGYQLEKIMKELFVLFDLDPKASFKIQGEQIDGAFTFENTDYLFEGKWQKELVGIQELDAFSGKLSRKLDNTLGLFLAVNGFSEDAVKAHSTGRRLMILMDGSDLMAVLEARIDLIQLLLRKRRHAAQTGNIYLRLHEIL 229          
BLAST of mRNA_M-pyrifera_M_contig87361.20299.1 vs. uniprot
Match: UPI0019D386C7 (restriction endonuclease n=1 Tax=Algoriphagus oliviformis TaxID=2811231 RepID=UPI0019D386C7)

HSP 1 Score: 248 bits (632), Expect = 5.530e-79
Identity = 128/215 (59.53%), Postives = 167/215 (77.67%), Query Frame = 1
Query:    1 DAGEEKAAEARAAVEALHGQISGLEAFIEEEREIERRRQEAHEQRVKTDAVQQALQESAKEYFELLNSEDPQGRGYKLEKILRGLFELFDLDPRASFRVVGEQIDGAFSFEGTDYLLEAKWQKEPVRASDLDSLAGKLNRKLKNTLGLYLSINGYSEDGVHAHSSGRRLTILMDGSDLMAVLEGRIDLLQLLLRKRRVAAQTGNIYLKVHEILTG 645
            D GEEK   A+ AV AL     G    I+E+ EIE RR++   +++K  AV++ L+E+  +++ LL+S DPQ RGY+LEK+L+ LF LFDLD +ASF++VGEQIDG F+FE  D+LLEAKW K+P+  S LDS +GKL R+L+NTLGL++SING+S D + AHS+GR+L ILMDGSDLMAVLEGRIDL+QLL RKRR AAQTGNI+L +HEI+ G
Sbjct:   91 DDGEEKEKNAKEAVNALRKVSQGHLVQIKEQEEIENRRKKVFHEQLKKTAVREKLEETKIDFYALLSSSDPQKRGYQLEKLLKDLFNLFDLDSKASFKIVGEQIDGMFTFENNDFLLEAKWHKDPIDISSLDSFSGKLGRRLENTLGLFISINGFSPDAIQAHSAGRKLMILMDGSDLMAVLEGRIDLIQLLARKRRYAAQTGNIFLGIHEIMKG 305          
BLAST of mRNA_M-pyrifera_M_contig87361.20299.1 vs. uniprot
Match: UPI001C57647E (restriction endonuclease n=1 Tax=Metabacillus litoralis TaxID=152268 RepID=UPI001C57647E)

HSP 1 Score: 219 bits (558), Expect = 8.640e-69
Identity = 118/212 (55.66%), Postives = 160/212 (75.47%), Query Frame = 1
Query:    7 GEEKAAEARAAVEALHGQISGLEAFIEEEREIERRRQEAHEQRVKTDAVQQALQESAKEYFELLN-SEDPQGRGYKLEKILRGLFELFDLDPRASFRVVGEQIDGAFSFEGTDYLLEAKWQKEPVRASDLDSLAGKLNRKLKNTLGLYLSINGYSEDGVHAHSSGRRLTILMDGSDLMAVLEGRIDLLQLLLRKRRVAAQTGNIYLKVHEIL 639
            G+EKA  A+ A+ AL    S   + +EE+++IE RR  A E+ V+  A+ + L++   EY++LL  S +PQ RGYKLE  L+ LF LFDLDP++SF+++GEQIDGAFSF+ T++LLEAKW KEP     LD+  GKL RKL+NTLGL++SING+++D V AHS+G++  ILMDG DLMAVLE RIDL++LL  K+RVA+Q GNIY KV++IL
Sbjct:   19 GKEKAKAAKEAINALKELYSSHSSLLEEQKKIEERRALATEKLVRNKALNERLEQLKYEYYQLLGQSYNPQSRGYKLEIFLKELFLLFDLDPKSSFKLLGEQIDGAFSFQNTEFLLEAKWHKEPTNIQHLDAFNGKLGRKLENTLGLFISINGFTDDAVTAHSAGKKSMILMDGMDLMAVLERRIDLIELLSFKKRVASQKGNIYFKVNDIL 230          
BLAST of mRNA_M-pyrifera_M_contig87361.20299.1 vs. uniprot
Match: UPI001FF4834C (restriction endonuclease n=1 Tax=Arenibacter sp. S6351L TaxID=2926407 RepID=UPI001FF4834C)

HSP 1 Score: 221 bits (562), Expect = 2.120e-68
Identity = 119/215 (55.35%), Postives = 152/215 (70.70%), Query Frame = 1
Query:    1 DAGEEKAAEARAAVEALHGQISGLEAFIEEEREIERRRQEAHEQRVKTDAVQQALQESAKEYFELLNSEDPQGRGYKLEKILRGLFELFDLDPRASFRVVGEQIDGAFSFEGTDYLLEAKWQKEPVRASDLDSLAGKLNRKLKNTLGLYLSINGYSEDGVHAHSSGRRLTILMDGSDLMAVLEGRIDLLQLLLRKRRVAAQTGNIYLKVHEILTG 645
            D G EK   A+ +V AL     G     +E+ E+E RR                  E   +++ L++S D Q RG++LEK+L+ LF LFDLD +ASFR+ GEQIDG F+FE  D+LLEAKW K+PV  S LD+ +GKL+R+L+NTLGL++SING+S D + AHS+GRRL ILMDGSDLMAVLEGRIDL+QLL+RKRR AAQTGNIYL +HEI+ G
Sbjct:   91 DDGAEKEKAAKESVSALRKLSKGHLEQQKEQEEVEERRNXXXXXXXXXXXXXXXXXEIKTDFYALVSSNDAQKRGFQLEKLLKDLFNLFDLDSKASFRITGEQIDGMFTFENNDFLLEAKWYKDPVDISSLDAFSGKLSRRLENTLGLFISINGFSPDAIQAHSTGRRLMILMDGSDLMAVLEGRIDLIQLLVRKRRYAAQTGNIYLGIHEIMKG 305          
BLAST of mRNA_M-pyrifera_M_contig87361.20299.1 vs. uniprot
Match: K2MH63_9BACI (Uncharacterized protein n=10 Tax=Bacillaceae TaxID=186817 RepID=K2MH63_9BACI)

HSP 1 Score: 220 bits (560), Expect = 4.010e-68
Identity = 123/211 (58.29%), Postives = 151/211 (71.56%), Query Frame = 1
Query:    7 GEEKAAEARAAVEALHGQISGLEAFIEEEREIERRRQEAHEQRVKTDAVQQALQESAKEYFELLNSEDPQGRGYKLEKILRGLFELFDLDPRASFRVVGEQIDGAFSFEGTDYLLEAKWQKEPVRASDLDSLAGKLNRKLKNTLGLYLSINGYSEDGVHAHSSGRRLTILMDGSDLMAVLEGRIDLLQLLLRKRRVAAQTGNIYLKVHEIL 639
            G+ KA  A+ AV  L   I      I+EE EI+RRR E  E+   + AV   L E    YF L+ S+D Q RG++LEK+L  LFELFDLDP+ASFR +GEQ+DGAFS EGTDYL EAKW+ +   +SDLDS AGK+NRKL NTLGL+LSING+SED V  HS  R   +LMDG+DLMAVLE +ID + L++RKRR AAQTGNIYLK  E++
Sbjct:   94 GKRKAGRAKQAVADLKRLIEDQTQRIKEEEEIKRRRLENLEKIRSSQAVLNKLDEIKTNYFRLVTSQDYQKRGFELEKVLYDLFELFDLDPKASFRNIGEQLDGAFSLEGTDYLFEAKWKNQLSDSSDLDSFAGKINRKLDNTLGLFLSINGFSEDAVKIHSVSRSTILLMDGTDLMAVLENQIDFVSLIIRKRRHAAQTGNIYLKSSEVV 304          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87361.20299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001109A9772.700e-8670.90restriction endonuclease n=1 Tax=Aliifodinibius sa... [more]
UPI0019033DDE5.220e-8464.93restriction endonuclease n=1 Tax=Thiocystis violac... [more]
A0A7V1ZSS9_9BACT4.860e-8264.79Mrr_cat domain-containing protein n=1 Tax=candidat... [more]
A0A3A9JSQ5_9THEO8.170e-8162.44Uncharacterized protein n=1 Tax=Thermoanaerobacter... [more]
A0A6H9I432_9BACT1.920e-8060.00Uncharacterized protein n=1 Tax=Chlorobi bacterium... [more]
A0A7V6Q2S3_9FIRM3.790e-7961.50Uncharacterized protein n=1 Tax=Thermoanaerobacter... [more]
UPI0019D386C75.530e-7959.53restriction endonuclease n=1 Tax=Algoriphagus oliv... [more]
UPI001C57647E8.640e-6955.66restriction endonuclease n=1 Tax=Metabacillus lito... [more]
UPI001FF4834C2.120e-6855.35restriction endonuclease n=1 Tax=Arenibacter sp. S... [more]
K2MH63_9BACI4.010e-6858.29Uncharacterized protein n=10 Tax=Bacillaceae TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87361contigM-pyrifera_M_contig87361:2..655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score221.9
Seed ortholog evalue3e-55
Seed eggNOG ortholog1178537.BA1_14108
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Restriction endonuclease
EggNOG OGs1VGCJ@1239,1ZPU1@1386,4IPF4@91061,COG1715@1,COG1715@2
COG Functional cat.V
Best tax levelBacillus
Best eggNOG OGNA|NA|NA
Exons1
Model size654
Cds size654
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816782.5392382-CDS-M-pyrifera_M_contig87361:1..6551622816782.5392382-CDS-M-pyrifera_M_contig87361:1..655Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87361 2..655 +
1692278175.504346-CDS-M-pyrifera_M_contig87361:1..6551692278175.504346-CDS-M-pyrifera_M_contig87361:1..655Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87361 2..655 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87361.20299.1prot_M-pyrifera_M_contig87361.20299.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87361 2..655 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87361.20299.1

>prot_M-pyrifera_M_contig87361.20299.1 ID=prot_M-pyrifera_M_contig87361.20299.1|Name=mRNA_M-pyrifera_M_contig87361.20299.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=218bp
DAGEEKAAEARAAVEALHGQISGLEAFIEEEREIERRRQEAHEQRVKTDA
VQQALQESAKEYFELLNSEDPQGRGYKLEKILRGLFELFDLDPRASFRVV
GEQIDGAFSFEGTDYLLEAKWQKEPVRASDLDSLAGKLNRKLKNTLGLYL
SINGYSEDGVHAHSSGRRLTILMDGSDLMAVLEGRIDLLQLLLRKRRVAA
QTGNIYLKVHEILTGSV*
back to top

mRNA from alignment at M-pyrifera_M_contig87361:2..655+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87361.20299.1 ID=mRNA_M-pyrifera_M_contig87361.20299.1|Name=mRNA_M-pyrifera_M_contig87361.20299.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig87361:2..655+ (Macrocystis pyrifera P11B4 male)
GACGCGGGCGAGGAAAAGGCTGCGGAGGCCAGGGCCGCCGTCGAGGCGTT ACACGGGCAGATCTCGGGCCTTGAGGCCTTCATCGAGGAGGAACGCGAGA TCGAGCGACGCAGGCAGGAGGCCCACGAGCAACGAGTGAAGACGGATGCT GTTCAACAGGCACTGCAGGAGTCGGCGAAGGAGTACTTCGAGCTGCTGAA TTCGGAGGATCCGCAGGGTCGAGGTTACAAACTAGAGAAGATCCTACGTG GGCTGTTCGAGCTCTTCGACCTTGACCCCAGGGCGTCATTCCGTGTCGTC GGTGAACAGATCGATGGAGCCTTTTCCTTCGAAGGAACCGACTACCTTCT TGAAGCCAAGTGGCAGAAGGAGCCCGTTCGCGCATCAGACCTCGATTCGC TCGCGGGAAAGCTGAACCGCAAGCTCAAGAATACTCTTGGGTTGTACCTG TCCATCAACGGCTACTCGGAGGACGGCGTCCATGCACATTCATCTGGGCG ACGGCTGACGATCTTGATGGACGGAAGTGATCTCATGGCGGTTCTTGAGG GCCGGATCGACCTACTCCAGCTCCTTCTCCGGAAACGCCGCGTCGCTGCC CAGACGGGGAACATCTACCTCAAGGTCCATGAGATTCTCACTGGCAGTGT CTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig87361:2..655+

>mRNA_M-pyrifera_M_contig87361.20299.1 ID=mRNA_M-pyrifera_M_contig87361.20299.1|Name=mRNA_M-pyrifera_M_contig87361.20299.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1308bp|location=Sequence derived from alignment at M-pyrifera_M_contig87361:2..655+ (Macrocystis pyrifera P11B4 male)
GACGCGGGCGAGGAAAAGGCTGCGGAGGCCAGGGCCGCCGTCGAGGCGTT
ACACGGGCAGATCTCGGGCCTTGAGGCCTTCATCGAGGAGGAACGCGAGA
TCGAGCGACGCAGGCAGGAGGCCCACGAGCAACGAGTGAAGACGGATGCT
GTTCAACAGGCACTGCAGGAGTCGGCGAAGGAGTACTTCGAGCTGCTGAA
TTCGGAGGATCCGCAGGGTCGAGGTTACAAACTAGAGAAGATCCTACGTG
GGCTGTTCGAGCTCTTCGACCTTGACCCCAGGGCGTCATTCCGTGTCGTC
GGTGAACAGATCGATGGAGCCTTTTCCTTCGAAGGAACCGACTACCTTCT
TGAAGCCAAGTGGCAGAAGGAGCCCGTTCGCGCATCAGACCTCGATTCGC
TCGCGGGAAAGCTGAACCGCAAGCTCAAGAATACTCTTGGGTTGTACCTG
TCCATCAACGGCTACTCGGAGGACGGCGTCCATGCACATTCATCTGGGCG
ACGGCTGACGATCTTGATGGACGGAAGTGATCTCATGGCGGTTCTTGAGG
GCCGGATCGACCTACTCCAGCTCCTTCTCCGGAAACGCCGCGTCGCTGCC
CAGACGGGGAACATCTACCTCAAGGTCCATGAGATTCTCACTGGCAGTGT
CTAAGACGCGGGCGAGGAAAAGGCTGCGGAGGCCAGGGCCGCCGTCGAGG
CGTTACACGGGCAGATCTCGGGCCTTGAGGCCTTCATCGAGGAGGAACGC
GAGATCGAGCGACGCAGGCAGGAGGCCCACGAGCAACGAGTGAAGACGGA
TGCTGTTCAACAGGCACTGCAGGAGTCGGCGAAGGAGTACTTCGAGCTGC
TGAATTCGGAGGATCCGCAGGGTCGAGGTTACAAACTAGAGAAGATCCTA
CGTGGGCTGTTCGAGCTCTTCGACCTTGACCCCAGGGCGTCATTCCGTGT
CGTCGGTGAACAGATCGATGGAGCCTTTTCCTTCGAAGGAACCGACTACC
TTCTTGAAGCCAAGTGGCAGAAGGAGCCCGTTCGCGCATCAGACCTCGAT
TCGCTCGCGGGAAAGCTGAACCGCAAGCTCAAGAATACTCTTGGGTTGTA
CCTGTCCATCAACGGCTACTCGGAGGACGGCGTCCATGCACATTCATCTG
GGCGACGGCTGACGATCTTGATGGACGGAAGTGATCTCATGGCGGTTCTT
GAGGGCCGGATCGACCTACTCCAGCTCCTTCTCCGGAAACGCCGCGTCGC
TGCCCAGACGGGGAACATCTACCTCAAGGTCCATGAGATTCTCACTGGCA
GTGTCTAA
back to top