mRNA_M-pyrifera_M_contig8731.20294.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig8731.20294.1
Unique NamemRNA_M-pyrifera_M_contig8731.20294.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig8731.20294.1 vs. uniprot
Match: A0A6H5JLA9_9PHAE (HeH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLA9_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 7.460e-10
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:   13 DDDWAVLSPAELKRKTVAQLKGYLDEEGVGYPGKVKKADLLDIVTSFLA 159
            D DW  LS   + RKTVA LK +LDEEG+ YP K+KKA+L+D+V + LA
Sbjct:  914 DGDWGALSAKAVGRKTVAALKEFLDEEGIDYPSKIKKAELVDMVLNMLA 962
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BLAST of mRNA_M-pyrifera_M_contig8731.20294.1 vs. uniprot
Match: D7FLN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLN9_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.390e-9
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:   13 DDDWAVLSPAELKRKTVAQLKGYLDEEGVGYPGKVKKADLLDIVTSFLA 159
            D DW  LS   + RKTVA LK +LDEEG+ YP K+KKA+L+D+V + LA
Sbjct:  563 DGDWGALSAKAVGRKTVAALKEFLDEEGMDYPSKIKKAELVDMVLNMLA 611
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig8731.20294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLA9_9PHAE7.460e-1057.14HeH domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FLN9_ECTSI1.390e-957.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig8731contigM-pyrifera_M_contig8731:10940..11101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816782.319283-CDS-M-pyrifera_M_contig8731:10939..111011622816782.319283-CDS-M-pyrifera_M_contig8731:10939..11101Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8731 10940..11101 -
1692278175.3863308-CDS-M-pyrifera_M_contig8731:10939..111011692278175.3863308-CDS-M-pyrifera_M_contig8731:10939..11101Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig8731 10940..11101 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig8731.20294.1prot_M-pyrifera_M_contig8731.20294.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig8731 10940..11101 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig8731.20294.1

>prot_M-pyrifera_M_contig8731.20294.1 ID=prot_M-pyrifera_M_contig8731.20294.1|Name=mRNA_M-pyrifera_M_contig8731.20294.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
MEGVDDDWAVLSPAELKRKTVAQLKGYLDEEGVGYPGKVKKADLLDIVTS
FLA*
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mRNA from alignment at M-pyrifera_M_contig8731:10940..11101-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig8731.20294.1 ID=mRNA_M-pyrifera_M_contig8731.20294.1|Name=mRNA_M-pyrifera_M_contig8731.20294.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=162bp|location=Sequence derived from alignment at M-pyrifera_M_contig8731:10940..11101- (Macrocystis pyrifera P11B4 male)
ATGGAGGGTGTGGACGATGATTGGGCGGTGCTGTCGCCCGCGGAGCTGAA
GCGTAAGACGGTGGCGCAGCTGAAGGGTTACCTAGACGAGGAGGGCGTTG
GCTACCCGGGGAAGGTGAAGAAGGCGGACCTTTTGGACATCGTCACTAGT
TTCCTCGCCTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig8731:10940..11101-

>mRNA_M-pyrifera_M_contig8731.20294.1 ID=mRNA_M-pyrifera_M_contig8731.20294.1|Name=mRNA_M-pyrifera_M_contig8731.20294.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig8731:10940..11101- (Macrocystis pyrifera P11B4 male)
ATGGAGGGTGTGGACGATGATTGGGCGGTGCTGTCGCCCGCGGAGCTGAA
GCGTAAGACGGTGGCGCAGCTGAAGGGTTACCTAGACGAGGAGGGCGTTG
GCTACCCGGGGAAGGTGAAGAAGGCGGACCTTTTGGACATCGTCACTAGT
TTCCTCGCCTAGATGGAGGGTGTGGACGATGATTGGGCGGTGCTGTCGCC
CGCGGAGCTGAAGCGTAAGACGGTGGCGCAGCTGAAGGGTTACCTAGACG
AGGAGGGCGTTGGCTACCCGGGGAAGGTGAAGAAGGCGGACCTTTTGGAC
ATCGTCACTAGTTTCCTCGCCTAG
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