mRNA_M-pyrifera_M_contig87304.20292.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87304.20292.1
Unique NamemRNA_M-pyrifera_M_contig87304.20292.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig87304.20292.1 vs. uniprot
Match: A0A5A8EHW5_CAFRO (Uncharacterized protein n=5 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EHW5_CAFRO)

HSP 1 Score: 64.3 bits (155), Expect = 1.020e-9
Identity = 32/59 (54.24%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:  124 ASFDEQYRATLKALSMREGLGKRFGAPRRRSQARIRSLVAFAESDARAIDARLEELEQL 300
            A+F++ +  +L+ALSMREGLGKRFGAPRR+   R+R+L+ +++ + R I ARL+ELE L
Sbjct: 1495 AAFEQAFADSLRALSMREGLGKRFGAPRRQCTERLRTLLGWSDEEERRIVARLDELEAL 1553
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BLAST of mRNA_M-pyrifera_M_contig87304.20292.1 vs. uniprot
Match: A0A7S1C3X5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3X5_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 8.500e-9
Identity = 39/106 (36.79%), Postives = 57/106 (53.77%), Query Frame = 1 
Query:    1 EADVVRDDLGRLDTKLRKRMSERALVCDTLAEEQSAEASKYASFDEQYRATLKALSMREGLGKRFGAPRRRSQARIRSLVAFAESDARAIDARLEELEQLLTVEPG 318
            E  + +  L  L+ KL   +  R    D  A  Q A       F  Q+   L+ LSMREGLG+++G PRR +Q R+R+ VA++++ A AID  L  LE +  + PG
Sbjct:  245 EVAIAKRGLADLEAKLEASVERRNDAVDGAAAGQQAAMDDIKDFKRQFDEALQDLSMREGLGQKYGGPRRNAQERMRTQVAWSDAAAAAIDDDLNALEAVGAMVPG 350
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BLAST of mRNA_M-pyrifera_M_contig87304.20292.1 vs. uniprot
Match: G4YEK1_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YEK1_PHYSP)

HSP 1 Score: 56.2 bits (134), Expect = 6.900e-7
Identity = 32/101 (31.68%), Postives = 60/101 (59.41%), Query Frame = 1 
Query:    1 EADVVRDDLGRLDTKLRKRMSERALVCDTLAEEQSAEASKYASFDEQYRATLKALSMREGLGKRFGAPRRRSQARIRSLVAFAESDARAIDARLEELEQLL 303
            E   V++ L  ++ + R R+ ER      ++  Q+     + +F  +Y+A +++L+M+EGLG++FG PRR +Q R RS +   E+ + +I+A L  L+ +L
Sbjct:  982 EIAAVKEKLSAIEAQARDRILEREKRMTEISSSQALVLDMWQAFKARYQACVQSLAMKEGLGQKFGLPRRAAQERYRSEMTRCEARSASINALLASLQSIL 1082
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BLAST of mRNA_M-pyrifera_M_contig87304.20292.1 vs. uniprot
Match: D0P3C6_PHYIT (DUF4456 domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0P3C6_PHYIT)

HSP 1 Score: 55.8 bits (133), Expect = 8.920e-7
Identity = 31/101 (30.69%), Postives = 59/101 (58.42%), Query Frame = 1 
Query:    1 EADVVRDDLGRLDTKLRKRMSERALVCDTLAEEQSAEASKYASFDEQYRATLKALSMREGLGKRFGAPRRRSQARIRSLVAFAESDARAIDARLEELEQLL 303
            E   +R+ L  ++ + R ++SER    D ++ +QS     + +F  + +  +++L+M+EGLG++FG P+R +Q R RS +   E+ +  I+  L  L+ LL
Sbjct:  135 EITAIREKLATIEAQARDQISEREKQIDEISSKQSQNMDIWETFKARSQTCMQSLAMKEGLGQKFGLPKRTAQERYRSEMTRCEARSATINTLLASLDSLL 235
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BLAST of mRNA_M-pyrifera_M_contig87304.20292.1 vs. uniprot
Match: A0A329RHE4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RHE4_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.290e-6
Identity = 32/101 (31.68%), Postives = 59/101 (58.42%), Query Frame = 1 
Query:    1 EADVVRDDLGRLDTKLRKRMSERALVCDTLAEEQSAEASKYASFDEQYRATLKALSMREGLGKRFGAPRRRSQARIRSLVAFAESDARAIDARLEELEQLL 303
            E   +++ L  ++ + R  +SER    D ++ +Q      + +F  + +A +++L+M+EGLG++FG PRR +Q R RS +   ES + AI+  L  LE ++
Sbjct: 1163 EISAIKEKLVAIEAQARDLISEREKQIDEISSKQGQILDMWEAFKARSQACMQSLAMKEGLGQKFGLPRRTAQERYRSEMTRCESRSAAINTLLASLESIV 1263
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BLAST of mRNA_M-pyrifera_M_contig87304.20292.1 vs. uniprot
Match: A0A833SJM3_PHYIN (DUF4456 domain-containing protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SJM3_PHYIN)

HSP 1 Score: 54.7 bits (130), Expect = 2.240e-6
Identity = 30/101 (29.70%), Postives = 59/101 (58.42%), Query Frame = 1 
Query:    1 EADVVRDDLGRLDTKLRKRMSERALVCDTLAEEQSAEASKYASFDEQYRATLKALSMREGLGKRFGAPRRRSQARIRSLVAFAESDARAIDARLEELEQLL 303
            E   +R+ L  ++ + R ++SER    D ++ +QS     + +F  + +  +++L+M+EGLG++FG P+R +Q R RS +   E+ +  I+  L  L+ L+
Sbjct:   15 EITAIREKLATIEAQARDQISEREKQIDEISSKQSQNMDIWETFKARSQTCMQSLAMKEGLGQKFGLPKRTAQERYRSEMTRCEARSATINTLLASLDSLV 115
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BLAST of mRNA_M-pyrifera_M_contig87304.20292.1 vs. uniprot
Match: A0A833SBH0_PHYIN (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SBH0_PHYIN)

HSP 1 Score: 54.3 bits (129), Expect = 3.290e-6
Identity = 31/101 (30.69%), Postives = 58/101 (57.43%), Query Frame = 1 
Query:    1 EADVVRDDLGRLDTKLRKRMSERALVCDTLAEEQSAEASKYASFDEQYRATLKALSMREGLGKRFGAPRRRSQARIRSLVAFAESDARAIDARLEELEQLL 303
            E   +R+ L  ++ + R ++SER    D ++ +QS     + +F  + +  +++L+M+EGLG++FG PRR  Q R RS +   E+ +  I+  L  L+ L+
Sbjct: 1160 EITAIREKLATIEAQARDQISEREKQIDEISSKQSQIMDIWETFKPRSQTCMQSLAMKEGLGQKFGLPRRTDQERYRSEMTRCEARSATINTLLASLDSLV 1260
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BLAST of mRNA_M-pyrifera_M_contig87304.20292.1 vs. uniprot
Match: A0A6A3F997_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3F997_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.290e-6
Identity = 31/100 (31.00%), Postives = 58/100 (58.00%), Query Frame = 1 
Query:    1 EADVVRDDLGRLDTKLRKRMSERALVCDTLAEEQSAEASKYASFDEQYRATLKALSMREGLGKRFGAPRRRSQARIRSLVAFAESDARAIDARLEELEQL 300
            E   +++ L  ++ + R R+SER      +   Q      + +F  +Y+A +++L+M+EGLG++FG PRR +Q R RS +   E+ + +I+A L  L+ +
Sbjct: 1178 EITAIKEKLFAIEAQARDRISEREKQIIGIGNSQGLVLEMWQTFKTRYQACVQSLAMKEGLGQKFGLPRRAAQERYRSEMTRCEARSASINALLASLQSI 1277
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BLAST of mRNA_M-pyrifera_M_contig87304.20292.1 vs. uniprot
Match: W4GMB2_9STRA (Uncharacterized protein n=16 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GMB2_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.560e-5
Identity = 30/90 (33.33%), Postives = 54/90 (60.00%), Query Frame = 1 
Query:   37 DTKLRKRMSERALVCDTLAEEQSAEASKYASFDEQYRATLKALSMREGLGKRFGAPRRRSQARIRSLVAFAESDARAIDARLEELEQLLT 306
            +T+++  ++ R    D L  ++    +  A+F  +Y + L+ LSM+EGLG+++G PRR +Q R+RS +  +++ A +ID  L  L Q  T
Sbjct: 1219 ETQIQAAVAARKATIDALEGQEGRVGALLATFKTRYHSCLQNLSMKEGLGQKYGMPRRNAQERLRSEMTRSDNMASSIDDLLHVLTQAAT 1308
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BLAST of mRNA_M-pyrifera_M_contig87304.20292.1 vs. uniprot
Match: F0YNN6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNN6_AURAN)

HSP 1 Score: 52.4 bits (124), Expect = 1.560e-5
Identity = 34/99 (34.34%), Postives = 55/99 (55.56%), Query Frame = 1 
Query:    1 EADVVRDDLGRLDTKLRKRMSERALVCDTLAEEQSAEASKYASFDEQYRATLKALSMREGLGKRFGAPRRRSQARIRSLVAFAESDARAIDARLEELEQ 297
            EA+ + + L  L   + + ++ RA     L + Q    +    F  +  A L+ LS+REGLG ++GAPRR +Q ++R+     E+DA  +DA LE LE+
Sbjct: 1117 EAEELTEKLDSLRAGIEQSVAARAEKLAALQDLQREALTGLVGFQREAEACLQELSLREGLGMKYGAPRRNAQEKLRTEQTRDEADAAHLDALLEALER 1215
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87304.20292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A5A8EHW5_CAFRO1.020e-954.24Uncharacterized protein n=5 Tax=Cafeteria roenberg... [more]
A0A7S1C3X5_9STRA8.500e-936.79Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
G4YEK1_PHYSP6.900e-731.68Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
D0P3C6_PHYIT8.920e-730.69DUF4456 domain-containing protein n=2 Tax=Phytopht... [more]
A0A329RHE4_9STRA1.290e-631.68Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A833SJM3_PHYIN2.240e-629.70DUF4456 domain-containing protein n=1 Tax=Phytopht... [more]
A0A833SBH0_PHYIN3.290e-630.69Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
A0A6A3F997_9STRA3.290e-631.00Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
W4GMB2_9STRA1.560e-533.33Uncharacterized protein n=16 Tax=Aphanomyces astac... [more]
F0YNN6_AURAN1.560e-534.34Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87304contigM-pyrifera_M_contig87304:11..334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue4.4e-07
Seed eggNOG ortholog4787.PITG_20628T0
Preferred namePOLR3H
KEGG rclassRC02795
KEGG koko:K03022
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map01100,map03020,map04623,map05169
KEGG ModuleM00181
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006351,GO:0006352,GO:0006383,GO:0006384,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015630,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0046483,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.transcription initiation from RNA polymerase III promoter
EggNOG OGs3Q9Q5@4776,COG1095@1,KOG3297@2759
COG Functional cat.K
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03021
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816782.2481487-CDS-M-pyrifera_M_contig87304:10..3341622816782.2481487-CDS-M-pyrifera_M_contig87304:10..334Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87304 11..334 +
1692278175.3608227-CDS-M-pyrifera_M_contig87304:10..3341692278175.3608227-CDS-M-pyrifera_M_contig87304:10..334Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87304 11..334 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87304.20292.1prot_M-pyrifera_M_contig87304.20292.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87304 11..334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87304.20292.1

>prot_M-pyrifera_M_contig87304.20292.1 ID=prot_M-pyrifera_M_contig87304.20292.1|Name=mRNA_M-pyrifera_M_contig87304.20292.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=108bp
EADVVRDDLGRLDTKLRKRMSERALVCDTLAEEQSAEASKYASFDEQYRA
TLKALSMREGLGKRFGAPRRRSQARIRSLVAFAESDARAIDARLEELEQL
LTVEPGDV
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mRNA from alignment at M-pyrifera_M_contig87304:11..334+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87304.20292.1 ID=mRNA_M-pyrifera_M_contig87304.20292.1|Name=mRNA_M-pyrifera_M_contig87304.20292.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig87304:11..334+ (Macrocystis pyrifera P11B4 male)
GAAGCTGATGTAGTGCGTGATGATTTGGGTCGATTGGATACAAAACTGCG
CAAACGAATGTCAGAACGTGCGCTTGTATGTGACACGTTGGCGGAGGAAC
AGTCAGCTGAAGCTTCCAAGTATGCTTCATTTGATGAACAATACCGTGCG
ACACTCAAGGCGTTATCGATGAGAGAAGGACTTGGAAAACGATTTGGAGC
ACCTCGTCGACGATCTCAAGCTCGAATTCGATCACTTGTAGCATTTGCTG
AGTCAGATGCGCGTGCGATTGATGCAAGGCTGGAGGAGTTGGAACAACTC
CTCACTGTAGAACCAGGAGATGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87304:11..334+

>mRNA_M-pyrifera_M_contig87304.20292.1 ID=mRNA_M-pyrifera_M_contig87304.20292.1|Name=mRNA_M-pyrifera_M_contig87304.20292.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig87304:11..334+ (Macrocystis pyrifera P11B4 male)
GAAGCTGATGTAGTGCGTGATGATTTGGGTCGATTGGATACAAAACTGCG
CAAACGAATGTCAGAACGTGCGCTTGTATGTGACACGTTGGCGGAGGAAC
AGTCAGCTGAAGCTTCCAAGTATGCTTCATTTGATGAACAATACCGTGCG
ACACTCAAGGCGTTATCGATGAGAGAAGGACTTGGAAAACGATTTGGAGC
ACCTCGTCGACGATCTCAAGCTCGAATTCGATCACTTGTAGCATTTGCTG
AGTCAGATGCGCGTGCGATTGATGCAAGGCTGGAGGAGTTGGAACAACTC
CTCACTGTAGAACCAGGAGATGTAGAAGCTGATGTAGTGCGTGATGATTT
GGGTCGATTGGATACAAAACTGCGCAAACGAATGTCAGAACGTGCGCTTG
TATGTGACACGTTGGCGGAGGAACAGTCAGCTGAAGCTTCCAAGTATGCT
TCATTTGATGAACAATACCGTGCGACACTCAAGGCGTTATCGATGAGAGA
AGGACTTGGAAAACGATTTGGAGCACCTCGTCGACGATCTCAAGCTCGAA
TTCGATCACTTGTAGCATTTGCTGAGTCAGATGCGCGTGCGATTGATGCA
AGGCTGGAGGAGTTGGAACAACTCCTCACTGTAGAACCAGGAGATGTA
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