mRNA_M-pyrifera_M_contig109737.2029.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109737.2029.1
Unique NamemRNA_M-pyrifera_M_contig109737.2029.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig109737.2029.1 vs. uniprot
Match: A0A4D6NXF4_UNDPI (Zeta-carotene desaturase, chloroplastic/chromoplastic n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=A0A4D6NXF4_UNDPI)

HSP 1 Score: 114 bits (286), Expect = 2.330e-28
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:    1 AQEDVRALDSITFSEWFERKGGSRGSISRMWDPVAYALGFIDCDHISARCMLTIFQV 171
            A EDVRALD +TFSEWFE KGGSRGSISRMWDPVAYALGFIDCDHISARCMLTIFQ+
Sbjct:  247 AMEDVRALDKMTFSEWFEGKGGSRGSISRMWDPVAYALGFIDCDHISARCMLTIFQL 303
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BLAST of mRNA_M-pyrifera_M_contig109737.2029.1 vs. uniprot
Match: A0A6H5JB95_9PHAE (Amino_oxidase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB95_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.990e-27
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    1 AQEDVRALDSITFSEWFERKGGSRGSISRMWDPVAYALGFIDCDHISARCMLTIFQVS 174
            A EDVRALDS+TFSEWFE KGGSRGSI R+WDP+AYALGFIDCD+ISARCMLTIFQ S
Sbjct:  254 AMEDVRALDSMTFSEWFEGKGGSRGSIERLWDPIAYALGFIDCDNISARCMLTIFQAS 311
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BLAST of mRNA_M-pyrifera_M_contig109737.2029.1 vs. uniprot
Match: W7UB54_9STRA (Zeta-carotene desaturase, chloroplastic/chromoplastic n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UB54_9STRA)

HSP 1 Score: 111 bits (277), Expect = 4.110e-27
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:    1 AQEDVRALDSITFSEWFERKGGSRGSISRMWDPVAYALGFIDCDHISARCMLTIFQV 171
            A EDVRALD I+FSEWF RKGGSRGS++RMWDP+AYALGFIDCDHISARCMLTIFQ+
Sbjct:  241 AMEDVRALDGISFSEWFLRKGGSRGSMTRMWDPIAYALGFIDCDHISARCMLTIFQL 297
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BLAST of mRNA_M-pyrifera_M_contig109737.2029.1 vs. uniprot
Match: D8LJ40_ECTSI (Zeta-carotene desaturase, chloroplastic/chromoplastic n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ40_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 7.440e-27
Identity = 49/57 (85.96%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:    1 AQEDVRALDSITFSEWFERKGGSRGSISRMWDPVAYALGFIDCDHISARCMLTIFQV 171
            A EDVRALDS+TFSEWFE KGGSRGSI R+WDP+AYALGFIDCD+ISARCMLTIFQ+
Sbjct:  241 AMEDVRALDSMTFSEWFEGKGGSRGSIERLWDPIAYALGFIDCDNISARCMLTIFQL 297
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BLAST of mRNA_M-pyrifera_M_contig109737.2029.1 vs. uniprot
Match: A0A0G4FAC3_VITBC (Zeta-carotene desaturase, chloroplastic/chromoplastic n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FAC3_VITBC)

HSP 1 Score: 107 bits (267), Expect = 8.390e-26
Identity = 48/57 (84.21%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    1 AQEDVRALDSITFSEWFERKGGSRGSISRMWDPVAYALGFIDCDHISARCMLTIFQV 171
            A EDVR LD I+FSEWF  KGGSRGSI RMWDP+AYALGFIDCDHISARCMLTIFQ+
Sbjct:  177 AMEDVRNLDDISFSEWFLSKGGSRGSIDRMWDPIAYALGFIDCDHISARCMLTIFQL 233
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BLAST of mRNA_M-pyrifera_M_contig109737.2029.1 vs. uniprot
Match: A0A836CNI7_9STRA (Zeta-carotene desaturase, chloroplastic/chromoplastic n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNI7_9STRA)

HSP 1 Score: 107 bits (267), Expect = 9.290e-26
Identity = 46/57 (80.70%), Postives = 54/57 (94.74%), Query Frame = 1 
Query:    1 AQEDVRALDSITFSEWFERKGGSRGSISRMWDPVAYALGFIDCDHISARCMLTIFQV 171
            A  DVRALD+++FSEWFE +GGSRGSI+R+WDP+AYALGFIDCDHISARCMLTIFQ+
Sbjct:  240 AMVDVRALDAVSFSEWFEGQGGSRGSITRLWDPIAYALGFIDCDHISARCMLTIFQL 296
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BLAST of mRNA_M-pyrifera_M_contig109737.2029.1 vs. uniprot
Match: A0A8J5XB03_DIALT (Zeta-carotene desaturase, chloroplastic/chromoplastic n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XB03_DIALT)

HSP 1 Score: 105 bits (261), Expect = 6.000e-25
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:   13 VRALDSITFSEWFERKGGSRGSISRMWDPVAYALGFIDCDHISARCMLTIFQV 171
            VRALD +TFSEWFE  GGSRGSI R+WDP+AYALGFIDCDHISARCMLTIFQ+
Sbjct:  225 VRALDDVTFSEWFEGSGGSRGSIKRLWDPIAYALGFIDCDHISARCMLTIFQL 277
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BLAST of mRNA_M-pyrifera_M_contig109737.2029.1 vs. uniprot
Match: A0A7S0NTM9_9EUKA (Zeta-carotene desaturase, chloroplastic/chromoplastic n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NTM9_9EUKA)

HSP 1 Score: 103 bits (256), Expect = 2.820e-24
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:   13 VRALDSITFSEWFERKGGSRGSISRMWDPVAYALGFIDCDHISARCMLTIFQV 171
            VR LD ITF+EWF RKGGSRGSI RMWDP+AYALGF+DCDHISARCMLTIF +
Sbjct:  224 VRELDDITFTEWFTRKGGSRGSIERMWDPIAYALGFLDCDHISARCMLTIFML 276
[Close]
BLAST of mRNA_M-pyrifera_M_contig109737.2029.1 vs. uniprot
Match: A0A7S0Q970_9EUKA (Zeta-carotene desaturase, chloroplastic/chromoplastic n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q970_9EUKA)

HSP 1 Score: 103 bits (256), Expect = 2.860e-24
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:   13 VRALDSITFSEWFERKGGSRGSISRMWDPVAYALGFIDCDHISARCMLTIFQV 171
            VR LD ITF+EWF RKGGSRGSI RMWDP+AYALGF+DCDHISARCMLTIF +
Sbjct:  231 VRELDDITFTEWFTRKGGSRGSIDRMWDPIAYALGFLDCDHISARCMLTIFML 283
[Close]
BLAST of mRNA_M-pyrifera_M_contig109737.2029.1 vs. uniprot
Match: A0A7S0VWE6_9CRYP (Zeta-carotene desaturase, chloroplastic/chromoplastic n=3 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0VWE6_9CRYP)

HSP 1 Score: 103 bits (256), Expect = 2.980e-24
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    7 EDVRALDSITFSEWFERKGGSRGSISRMWDPVAYALGFIDCDHISARCMLTIFQV 171
            E VR LD ITFSEWF R GGSRGSI RMWDP+AYALGFIDCDHISARCMLTIFQ+
Sbjct:  255 EMVRDLDDITFSEWFLRFGGSRGSIERMWDPIAYALGFIDCDHISARCMLTIFQL 309
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109737.2029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4D6NXF4_UNDPI2.330e-2891.23Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
A0A6H5JB95_9PHAE2.990e-2786.21Amino_oxidase domain-containing protein n=1 Tax=Ec... [more]
W7UB54_9STRA4.110e-2785.96Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
D8LJ40_ECTSI7.440e-2785.96Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
A0A0G4FAC3_VITBC8.390e-2684.21Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
A0A836CNI7_9STRA9.290e-2680.70Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
A0A8J5XB03_DIALT6.000e-2584.91Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
A0A7S0NTM9_9EUKA2.820e-2483.02Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
A0A7S0Q970_9EUKA2.860e-2483.02Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
A0A7S0VWE6_9CRYP2.980e-2485.45Zeta-carotene desaturase, chloroplastic/chromoplas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109737contigM-pyrifera_M_contig109737:81..260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue9.2e-23
Seed eggNOG ortholog2880.D8LJ40
Preferred nameZDS
KEGG rclassRC01214,RC01959
KEGG koko:K00514
KEGG ReactionR04798,R04800,R07511,R09656,R09658
KEGG Pathwayko00906,ko01100,ko01110,map00906,map01100,map01110
KEGG ModuleM00097
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009507,GO:0009509,GO:0009526,GO:0009536,GO:0009941,GO:0009987,GO:0016108,GO:0016109,GO:0016114,GO:0016116,GO:0016117,GO:0016119,GO:0016120,GO:0016491,GO:0016627,GO:0016635,GO:0031967,GO:0031975,GO:0042214,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046246,GO:0052886,GO:0052889,GO:0055114,GO:0071704,GO:1901175,GO:1901177,GO:1901576
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG1231@1,KOG0029@2759
EC1.3.5.6
COG Functional cat.E
BiGG ReactioniRC1080.CRv4_Au5_s7_g13718_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size180
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.5211806-CDS-M-pyrifera_M_contig109737:80..2601622815607.5211806-CDS-M-pyrifera_M_contig109737:80..260Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109737 81..260 -
1692277485.049817-CDS-M-pyrifera_M_contig109737:80..2601692277485.049817-CDS-M-pyrifera_M_contig109737:80..260Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109737 81..260 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109737.2029.1prot_M-pyrifera_M_contig109737.2029.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109737 81..260 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109737.2029.1

>prot_M-pyrifera_M_contig109737.2029.1 ID=prot_M-pyrifera_M_contig109737.2029.1|Name=mRNA_M-pyrifera_M_contig109737.2029.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=60bp
AQEDVRALDSITFSEWFERKGGSRGSISRMWDPVAYALGFIDCDHISARC
MLTIFQVSG*
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mRNA from alignment at M-pyrifera_M_contig109737:81..260-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109737.2029.1 ID=mRNA_M-pyrifera_M_contig109737.2029.1|Name=mRNA_M-pyrifera_M_contig109737.2029.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=180bp|location=Sequence derived from alignment at M-pyrifera_M_contig109737:81..260- (Macrocystis pyrifera P11B4 male)
GCGCAGGAGGACGTCCGAGCGCTGGACAGCATTACCTTCAGCGAGTGGTT
CGAGAGGAAGGGGGGCTCGAGGGGCTCCATCTCTCGTATGTGGGACCCTG
TCGCGTACGCGCTCGGCTTCATCGACTGCGACCATATCTCGGCGAGGTGC
ATGCTCACCATCTTCCAGGTGAGTGGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109737:81..260-

>mRNA_M-pyrifera_M_contig109737.2029.1 ID=mRNA_M-pyrifera_M_contig109737.2029.1|Name=mRNA_M-pyrifera_M_contig109737.2029.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig109737:81..260- (Macrocystis pyrifera P11B4 male)
GCGCAGGAGGACGTCCGAGCGCTGGACAGCATTACCTTCAGCGAGTGGTT
CGAGAGGAAGGGGGGCTCGAGGGGCTCCATCTCTCGTATGTGGGACCCTG
TCGCGTACGCGCTCGGCTTCATCGACTGCGACCATATCTCGGCGAGGTGC
ATGCTCACCATCTTCCAGGTGAGTGGGTGAGCGCAGGAGGACGTCCGAGC
GCTGGACAGCATTACCTTCAGCGAGTGGTTCGAGAGGAAGGGGGGCTCGA
GGGGCTCCATCTCTCGTATGTGGGACCCTGTCGCGTACGCGCTCGGCTTC
ATCGACTGCGACCATATCTCGGCGAGGTGCATGCTCACCATCTTCCAGGT
GAGTGGGTGA
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