mRNA_M-pyrifera_M_contig87203.20277.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87203.20277.1
Unique NamemRNA_M-pyrifera_M_contig87203.20277.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87203.20277.1 vs. uniprot
Match: D7FJE4_ECTSI (Annexin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE4_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.960e-24
Identity = 52/65 (80.00%), Postives = 56/65 (86.15%), Query Frame = 1
Query:   16 SKQAYTAYALFKAFEGLGTDEARVTRLLGGTDKAKMGDVADYYLSSYGKSLVEDLKDELSGDFLK 210
            + +AYTAYALFKAFEG+GTD  RVTRLLGGTDK KMG VA YYL +YG SLVEDLKDELSG FLK
Sbjct:  263 TSEAYTAYALFKAFEGVGTDNDRVTRLLGGTDKRKMGAVAAYYLQTYGNSLVEDLKDELSGTFLK 327          
BLAST of mRNA_M-pyrifera_M_contig87203.20277.1 vs. uniprot
Match: A0A6H5L407_9PHAE (Annexin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L407_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.960e-24
Identity = 52/65 (80.00%), Postives = 56/65 (86.15%), Query Frame = 1
Query:   16 SKQAYTAYALFKAFEGLGTDEARVTRLLGGTDKAKMGDVADYYLSSYGKSLVEDLKDELSGDFLK 210
            + +AYTAYALFKAFEG+GTD  RVTRLLGGTDK KMG VA YYL +YG SLVEDLKDELSG FLK
Sbjct:  242 TSEAYTAYALFKAFEGVGTDNDRVTRLLGGTDKRKMGAVAAYYLQTYGNSLVEDLKDELSGTFLK 306          
BLAST of mRNA_M-pyrifera_M_contig87203.20277.1 vs. uniprot
Match: A0A835YT40_9STRA (Anxa6 protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT40_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.790e-13
Identity = 35/67 (52.24%), Postives = 51/67 (76.12%), Query Frame = 1
Query:    4 ILCRSKQAYTAYALFKAFEGLGTDEARVTRLLGGTDKAKMGDVADYYLSSYGKSLVEDLKDELSGDF 204
            +L  S++AY A AL++AFEG+GT++ARV R+LG  DK +M  V  YY+ ++G +LVE ++DELSG F
Sbjct:  250 LLAPSREAYIATALYRAFEGVGTNDARVARMLGCVDKPEMAAVCAYYVDTWGVALVEAIRDELSGCF 316          
BLAST of mRNA_M-pyrifera_M_contig87203.20277.1 vs. uniprot
Match: A0A836CML3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CML3_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 5.460e-12
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 1
Query:   28 YTAYALFKAFEGLGTDEARVTRLLGGTDKAKMGDVADYYLSSYGKSLVEDLKDELSGDF 204
            Y A  L KAF+G+GTDEA V R+L   DK +M  VAD+YL +YG++L E +K ELSGDF
Sbjct:  477 YYARLLHKAFKGMGTDEAAVVRVLTSLDKREMKPVADHYLETYGRTLTEAIKSELSGDF 535          
BLAST of mRNA_M-pyrifera_M_contig87203.20277.1 vs. uniprot
Match: A0A836CCJ5_9STRA (Annexin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCJ5_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.650e-11
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 1
Query:    4 ILCRSKQAYTAYALFKAFEGLGTDEARVTRLLGGTDKAKMGDVADYYLSSYGKSLVEDLKDE--LSGDFL 207
            +L  S  AYTA AL K+FEG+GTD+ R+ R+LGGTDK  M  V + YL +YG++L + L  E  ++GDFL
Sbjct:  251 LLLPSTAAYTALALRKSFEGVGTDKDRICRVLGGTDKLLMPAVCEAYLDTYGETLQQSLNKETLVTGDFL 320          
BLAST of mRNA_M-pyrifera_M_contig87203.20277.1 vs. uniprot
Match: UPI0014257BE4 (annexin A13-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014257BE4)

HSP 1 Score: 60.5 bits (145), Expect = 4.600e-9
Identity = 27/65 (41.54%), Postives = 44/65 (67.69%), Query Frame = 1
Query:   10 CRSKQAYTAYALFKAFEGLGTDEARVTRLLGGTDKAKMGDVADYYLSSYGKSLVEDLKDELSGDF 204
            C+  +   A AL  A +GLGTDE ++T +L     A+  ++ +YY ++YGK L++DLKD+LSG++
Sbjct:   14 CKFNKEEDARALKNAMKGLGTDEDQITAVLANRTNAQRQEIREYYKTAYGKDLIQDLKDDLSGNY 78          
BLAST of mRNA_M-pyrifera_M_contig87203.20277.1 vs. uniprot
Match: UPI00125E15D4 (annexin D3-like n=3 Tax=Ipomoea TaxID=4119 RepID=UPI00125E15D4)

HSP 1 Score: 58.2 bits (139), Expect = 3.110e-8
Identity = 26/56 (46.43%), Postives = 40/56 (71.43%), Query Frame = 1
Query:   43 LFKAFEGLGTDEARVTRLLGGTDKAKMGDVADYYLSSYGKSLVEDLKDELSGDFLK 210
            L KAF+GLGT+E  + R+LG  + ++  D+ + Y   Y KSL++DL+ ELSGDF++
Sbjct:   20 LMKAFKGLGTEEKEIIRVLGHRNASQRKDIREAYQQLYNKSLIDDLRSELSGDFME 75          
BLAST of mRNA_M-pyrifera_M_contig87203.20277.1 vs. uniprot
Match: A0A813LSN6_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LSN6_POLGL)

HSP 1 Score: 52.0 bits (123), Expect = 1.020e-6
Identity = 26/67 (38.81%), Postives = 42/67 (62.69%), Query Frame = 1
Query:   10 CRSKQAYTAYALFKAFEGLGTDEARVTRLLGGTDKAKMGDVADYYLSSYGKSLVEDLKDELSGDFLK 210
            C  K  Y A AL  AF+G GTDE  ++R+LG + K ++  +A  +   +G+SL + ++ E+SG+F K
Sbjct:    8 CHDKPTYYATALEGAFQGWGTDERAISRILGRSSKPEVRRIATRFKQLFGRSLRDAIEAEVSGNFKK 74          
BLAST of mRNA_M-pyrifera_M_contig87203.20277.1 vs. uniprot
Match: W9RNS8_9ROSA (Annexin n=1 Tax=Morus notabilis TaxID=981085 RepID=W9RNS8_9ROSA)

HSP 1 Score: 53.9 bits (128), Expect = 1.040e-6
Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 1
Query:   43 LFKAFEGLGTDEARVTRLLGGTDKAKMGDVADYYLSSYGKSLVEDLKDELSGDFLK 210
            L KAFEGLGTDE  + ++LG  + ++  ++ + YL  Y +SL++ L+ ELSGDF K
Sbjct:   50 LHKAFEGLGTDEKDLIKVLGHRNASQRKEIRETYLQLYNQSLIDALQSELSGDFRK 105          
BLAST of mRNA_M-pyrifera_M_contig87203.20277.1 vs. uniprot
Match: A0A2P5FM10_TREOI (Annexin n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5FM10_TREOI)

HSP 1 Score: 53.1 bits (126), Expect = 1.940e-6
Identity = 28/62 (45.16%), Postives = 40/62 (64.52%), Query Frame = 1
Query:   25 AYTAYALFKAFEGLGTDEARVTRLLGGTDKAKMGDVADYYLSSYGKSLVEDLKDELSGDFLK 210
            A+ + AL KAF+GLGTDE  V R+LG  + ++   + + Y   Y +SL++ L  ELSGDF K
Sbjct:   47 AHDSEALKKAFDGLGTDEKAVIRILGHRNASQRRKIRETYQQLYNESLIDRLFSELSGDFRK 108          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87203.20277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJE4_ECTSI1.960e-2480.00Annexin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5L407_9PHAE1.960e-2480.00Annexin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
A0A835YT40_9STRA1.790e-1352.24Anxa6 protein n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A836CML3_9STRA5.460e-1257.63Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CCJ5_9STRA2.650e-1151.43Annexin n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
UPI0014257BE44.600e-941.54annexin A13-like n=1 Tax=Anneissia japonica TaxID=... [more]
UPI00125E15D43.110e-846.43annexin D3-like n=3 Tax=Ipomoea TaxID=4119 RepID=U... [more]
A0A813LSN6_POLGL1.020e-638.81Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
W9RNS8_9ROSA1.040e-646.43Annexin n=1 Tax=Morus notabilis TaxID=981085 RepID... [more]
A0A2P5FM10_TREOI1.940e-645.16Annexin n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87203contigM-pyrifera_M_contig87203:249..461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue7.8e-21
Seed eggNOG ortholog2880.D7FJE4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.calcium-dependent phospholipid binding
EggNOG OGsKOG0819@1,KOG0819@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size213
Cds size213
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816781.6743038-CDS-M-pyrifera_M_contig87203:248..4611622816781.6743038-CDS-M-pyrifera_M_contig87203:248..461Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87203 249..461 -
1692278174.9996126-CDS-M-pyrifera_M_contig87203:248..4611692278174.9996126-CDS-M-pyrifera_M_contig87203:248..461Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87203 249..461 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87203.20277.1prot_M-pyrifera_M_contig87203.20277.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87203 249..461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87203.20277.1

>prot_M-pyrifera_M_contig87203.20277.1 ID=prot_M-pyrifera_M_contig87203.20277.1|Name=mRNA_M-pyrifera_M_contig87203.20277.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=71bp
MILCRSKQAYTAYALFKAFEGLGTDEARVTRLLGGTDKAKMGDVADYYLS
SYGKSLVEDLKDELSGDFLKV
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mRNA from alignment at M-pyrifera_M_contig87203:249..461-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87203.20277.1 ID=mRNA_M-pyrifera_M_contig87203.20277.1|Name=mRNA_M-pyrifera_M_contig87203.20277.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=213bp|location=Sequence derived from alignment at M-pyrifera_M_contig87203:249..461- (Macrocystis pyrifera P11B4 male)
ATGATCCTTTGTCGGAGTAAACAGGCATACACGGCGTACGCCCTGTTCAA GGCTTTCGAGGGCCTCGGGACAGACGAGGCGCGCGTCACTCGCCTGCTGG GCGGCACCGACAAAGCCAAGATGGGGGACGTCGCGGACTACTACCTCTCT TCCTATGGCAAGTCGCTCGTGGAGGACCTAAAGGACGAGCTCAGCGGAGA CTTCTTGAAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87203:249..461-

>mRNA_M-pyrifera_M_contig87203.20277.1 ID=mRNA_M-pyrifera_M_contig87203.20277.1|Name=mRNA_M-pyrifera_M_contig87203.20277.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig87203:249..461- (Macrocystis pyrifera P11B4 male)
ATGATCCTTTGTCGGAGTAAACAGGCATACACGGCGTACGCCCTGTTCAA
GGCTTTCGAGGGCCTCGGGACAGACGAGGCGCGCGTCACTCGCCTGCTGG
GCGGCACCGACAAAGCCAAGATGGGGGACGTCGCGGACTACTACCTCTCT
TCCTATGGCAAGTCGCTCGTGGAGGACCTAAAGGACGAGCTCAGCGGAGA
CTTCTTGAAGGTGATGATCCTTTGTCGGAGTAAACAGGCATACACGGCGT
ACGCCCTGTTCAAGGCTTTCGAGGGCCTCGGGACAGACGAGGCGCGCGTC
ACTCGCCTGCTGGGCGGCACCGACAAAGCCAAGATGGGGGACGTCGCGGA
CTACTACCTCTCTTCCTATGGCAAGTCGCTCGTGGAGGACCTAAAGGACG
AGCTCAGCGGAGACTTCTTGAAGGTG
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