mRNA_M-pyrifera_M_contig872.20275.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig872.20275.1
Unique NamemRNA_M-pyrifera_M_contig872.20275.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig872.20275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig872contigM-pyrifera_M_contig872:2213..2658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size446
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig872.20275.1prot_M-pyrifera_M_contig872.20275.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig872 2219..2623 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816781.5598426-UTR-M-pyrifera_M_contig872:2212..22181622816781.5598426-UTR-M-pyrifera_M_contig872:2212..2218Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig872 2213..2218 +
1692278174.9257493-UTR-M-pyrifera_M_contig872:2212..22181692278174.9257493-UTR-M-pyrifera_M_contig872:2212..2218Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig872 2213..2218 +
1622816781.5809536-UTR-M-pyrifera_M_contig872:2623..26581622816781.5809536-UTR-M-pyrifera_M_contig872:2623..2658Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig872 2624..2658 +
1692278174.9453292-UTR-M-pyrifera_M_contig872:2623..26581692278174.9453292-UTR-M-pyrifera_M_contig872:2623..2658Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig872 2624..2658 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816781.5706756-CDS-M-pyrifera_M_contig872:2218..26231622816781.5706756-CDS-M-pyrifera_M_contig872:2218..2623Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig872 2219..2623 +
1692278174.9356472-CDS-M-pyrifera_M_contig872:2218..26231692278174.9356472-CDS-M-pyrifera_M_contig872:2218..2623Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig872 2219..2623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig872.20275.1

>prot_M-pyrifera_M_contig872.20275.1 ID=prot_M-pyrifera_M_contig872.20275.1|Name=mRNA_M-pyrifera_M_contig872.20275.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
MHLQKPKPTETLRKLGHGKLRIAWRPPWRASKDYCRVVVFLSKVLLLIPS
TESIRHPVCACTAIVRWRSAGVALFTAPRSVFWNSVCVNRYMPGSIKCVP
LWPWTVQLFERWTVRTALPTALSKDVSVVSVNAY*
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mRNA from alignment at M-pyrifera_M_contig872:2213..2658+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig872.20275.1 ID=mRNA_M-pyrifera_M_contig872.20275.1|Name=mRNA_M-pyrifera_M_contig872.20275.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=446bp|location=Sequence derived from alignment at M-pyrifera_M_contig872:2213..2658+ (Macrocystis pyrifera P11B4 male)
TCGAAAATGCACTTGCAGAAGCCGAAGCCGACCGAGACGTTGAGAAAGCT
AGGGCATGGGAAGCTGCGAATCGCTTGGAGGCCGCCGTGGCGCGCCTCGA
AGGATTACTGCAGGGTGGTGGTGTTTCTGTCGAAGGTGCTGCTACTGATT
CCATCGACAGAGTCGATTAGACACCCTGTCTGTGCCTGCACGGCAATCGT
TCGGTGGCGATCCGCTGGTGTTGCGCTTTTCACAGCCCCCCGATCGGTGT
TCTGGAACAGTGTGTGCGTGAATAGGTATATGCCTGGTTCAATTAAGTGC
GTACCGCTATGGCCGTGGACGGTGCAGCTCTTCGAAAGGTGGACTGTAAG
AACGGCGCTGCCGACTGCGTTGTCGAAGGATGTCTCCGTCGTTTCGGTGA
ATGCGTATTGAATTCAATCCAAACAAACGTCTGGACAAGAGCGGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig872:2213..2658+

>mRNA_M-pyrifera_M_contig872.20275.1 ID=mRNA_M-pyrifera_M_contig872.20275.1|Name=mRNA_M-pyrifera_M_contig872.20275.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig872:2213..2658+ (Macrocystis pyrifera P11B4 male)
ATGCACTTGCAGAAGCCGAAGCCGACCGAGACGTTGAGAAAGCTAGGGCA
TGGGAAGCTGCGAATCGCTTGGAGGCCGCCGTGGCGCGCCTCGAAGGATT
ACTGCAGGGTGGTGGTGTTTCTGTCGAAGGTGCTGCTACTGATTCCATCG
ACAGAGTCGATTAGACACCCTGTCTGTGCCTGCACGGCAATCGTTCGGTG
GCGATCCGCTGGTGTTGCGCTTTTCACAGCCCCCCGATCGGTGTTCTGGA
ACAGTGTGTGCGTGAATAGGTATATGCCTGGTTCAATTAAGTGCGTACCG
CTATGGCCGTGGACGGTGCAGCTCTTCGAAAGGTGGACTGTAAGAACGGC
GCTGCCGACTGCGTTGTCGAAGGATGTCTCCGTCGTTTCGGTGAATGCGT
ATTGAATGCACTTGCAGAAGCCGAAGCCGACCGAGACGTTGAGAAAGCTA
GGGCATGGGAAGCTGCGAATCGCTTGGAGGCCGCCGTGGCGCGCCTCGAA
GGATTACTGCAGGGTGGTGGTGTTTCTGTCGAAGGTGCTGCTACTGATTC
CATCGACAGAGTCGATTAGACACCCTGTCTGTGCCTGCACGGCAATCGTT
CGGTGGCGATCCGCTGGTGTTGCGCTTTTCACAGCCCCCCGATCGGTGTT
CTGGAACAGTGTGTGCGTGAATAGGTATATGCCTGGTTCAATTAAGTGCG
TACCGCTATGGCCGTGGACGGTGCAGCTCTTCGAAAGGTGGACTGTAAGA
ACGGCGCTGCCGACTGCGTTGTCGAAGGATGTCTCCGTCGTTTCGGTGAA
TGCGTATTGA
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