mRNA_M-pyrifera_M_contig109695.2027.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig109695.2027.1
Unique NamemRNA_M-pyrifera_M_contig109695.2027.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig109695.2027.1 vs. uniprot
Match: A0A1S3JVE4_LINUN (ankyrin repeat domain-containing protein 39 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JVE4_LINUN)

HSP 1 Score: 59.7 bits (143), Expect = 6.070e-8
Identity = 40/103 (38.83%), Postives = 57/103 (55.34%), Query Frame = 1
Query:   25 DDKSDTALHVASARGHLEVVKILLQAGCSVQLGNASGL-TPVHVART---DLILEQLVEYGAREDVVDRKGRTPLFVFAAAGRVEALRILLSK-PSGKATLHI 318
            D+   TALH AS  GHL V ++LL +G SV +   +G  TP+H A       IL+ L++YGARED+VD  G+T L           + +L+ K PS K+   +
Sbjct:   73 DNSGYTALHYASRNGHLAVCELLLTSGASVNVQTRAGAATPLHRAAYCGHQDILQLLMKYGAREDMVDSDGKTALXXXXXXXXSGCMALLVEKNPSLKSVADV 175          
BLAST of mRNA_M-pyrifera_M_contig109695.2027.1 vs. uniprot
Match: A0A4Q3VGT4_9BURK (Ankyrin repeat domain-containing protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A4Q3VGT4_9BURK)

HSP 1 Score: 55.5 bits (132), Expect = 5.840e-7
Identity = 30/69 (43.48%), Postives = 39/69 (56.52%), Query Frame = 1
Query:   37 DTALHVASARGHLEVVKILLQAGCSVQLGNASGLTPVHVARTDLILEQLVEYGAREDVVDRKGRTPLFV 243
            DT LHVAS RG+L  V++L++AG  V      G TP+H A T  +   L+  GA   + D  GR PL V
Sbjct:   42 DTCLHVASHRGNLRAVELLVKAGADVNRQGDMGSTPLHYAATPEVASFLIASGASNTIRDEFGRLPLQV 110          
BLAST of mRNA_M-pyrifera_M_contig109695.2027.1 vs. uniprot
Match: A0A2C9M8T2_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9M8T2_BIOGL)

HSP 1 Score: 53.1 bits (126), Expect = 5.660e-6
Identity = 30/82 (36.59%), Postives = 53/82 (64.63%), Query Frame = 1
Query:   13 MDCGDDKSDTALHVASARGHLEVVKILLQAGCSVQLGNASGLTPVHVA----RTDLILEQLVEYGARED---VVDRKGRTPL 237
            ++C D++ +TALH A + GH++ VK+LL A  SV   N +GL+P+ +A    +TD++L  ++++ + E+   V D+ G T L
Sbjct:   18 LNCRDEEKNTALHHACSNGHVDTVKVLLDANASVTTTNLNGLSPLGMAVMQHKTDVVLA-MIDHSSWEESLSVRDKTGATCL 98          
BLAST of mRNA_M-pyrifera_M_contig109695.2027.1 vs. uniprot
Match: A0A811YV59_NYCPR ((raccoon dog) hypothetical protein n=1 Tax=Nyctereutes procyonoides TaxID=34880 RepID=A0A811YV59_NYCPR)

HSP 1 Score: 53.5 bits (127), Expect = 9.910e-6
Identity = 32/94 (34.04%), Postives = 52/94 (55.32%), Query Frame = 1
Query:   22 GDDKSDTALHVASARGHLEVVKILLQAGCSVQLGNASGLTPVHVA---RTDLILEQLVEYGAREDVVDRKGRTPLFVFAAAGRVE-ALRILLSK 291
            GD  + +ALH+A A GH+++VK+L+   C + L +    T +  A   + +  ++ L+++GA  DV D KG T L   A    V  A ++LL K
Sbjct:   71 GDQMNRSALHLACANGHVDIVKLLIDRKCQLNLRDGENTTALMKAVQSQEEACVDILLKHGANPDVKDNKGNTALHYAAFGENVTIAQKVLLRK 164          
BLAST of mRNA_M-pyrifera_M_contig109695.2027.1 vs. uniprot
Match: A0A401P1T0_SCYTO (Protein phosphatase 1 regulatory subunit n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401P1T0_SCYTO)

HSP 1 Score: 54.7 bits (130), Expect = 1.180e-5
Identity = 41/105 (39.05%), Postives = 59/105 (56.19%), Query Frame = 1
Query:    7 EWMDCG------DDKSD-TALHVASARGHLEVVKILLQAGCSVQLGNASGLTPVHVAR---TDLILEQLVEYGAREDVVDRKGRTPLFVFAAAGRVEALRILLSK 291
            +W++ G      + KS  TALHVA+A+G+LEV+K+L+QAG  V + +  G TP+H A     +     LVE  A  + V++ G+TP F  A    VE L  L  K
Sbjct:  188 QWLNSGKIEDVRNTKSGGTALHVAAAKGYLEVLKLLIQAGYDVNVKDNDGWTPLHAAAHWCKEEACRILVENFADMESVNKVGQTP-FDLADESIVELLEELQKK 291          
BLAST of mRNA_M-pyrifera_M_contig109695.2027.1 vs. uniprot
Match: UPI00200752C0 (uncharacterized protein n=1 Tax=Purpureocillium takamizusanense TaxID=2060973 RepID=UPI00200752C0)

HSP 1 Score: 54.7 bits (130), Expect = 1.260e-5
Identity = 34/89 (38.20%), Postives = 53/89 (59.55%), Query Frame = 1
Query:   31 KSDTALHVASARGHLEVVKILLQAG-CSVQLGNASGLTPVHVARTD---LILEQLVEYGAREDVVDRKGRTPLFVFAAAGRVEALRILL 285
            +SDTAL VA+  G L +V+ L++ G  ++   N  G TP+  A +    ++++ L+E GA+ + +D  GR P+F  AA GR   LR LL
Sbjct: 1363 ESDTALTVAARTGQLAIVRKLVERGHANINHKNEQGWTPLVEAISSGHGVVVDWLIERGAKRNTLDWLGRLPMFFAAATGRTAILRRLL 1451          
BLAST of mRNA_M-pyrifera_M_contig109695.2027.1 vs. uniprot
Match: UPI0006D506E2 (ankyrin-3-like n=1 Tax=Halyomorpha halys TaxID=286706 RepID=UPI0006D506E2)

HSP 1 Score: 53.9 bits (128), Expect = 2.260e-5
Identity = 31/94 (32.98%), Postives = 51/94 (54.26%), Query Frame = 1
Query:   13 MDCGDDKSDTALHVASARGHLEVVKILLQAGCSVQLGNASGLTPVHVARTDLILEQLVEY----GAREDVVDRKGRTPLFVFAAAGRVEALRIL 282
            ++C      TALH+ASA+  LEVVK+L++ G  + + +  G+TP+  A  + + + L+ +    GA   +  + GRT L   A  G +E   IL
Sbjct:  422 VNCTTLNGMTALHIASAKESLEVVKVLVEYGAGIDIQDKDGITPLMAAANNSMSKNLISFLLHSGADLTLKSKAGRTALHYAAEGGCIECALIL 515          
BLAST of mRNA_M-pyrifera_M_contig109695.2027.1 vs. uniprot
Match: A0A8C0H0H5_CHEAB (Uncharacterized protein n=1 Tax=Chelonoidis abingdonii TaxID=106734 RepID=A0A8C0H0H5_CHEAB)

HSP 1 Score: 52.4 bits (124), Expect = 3.290e-5
Identity = 32/90 (35.56%), Postives = 54/90 (60.00%), Query Frame = 1
Query:   25 DDKSDTALHVASARGHLEVVKILLQAGCSVQLGNASGLTPVHVARTD---LILEQLVEYGAREDVVDRKGRTPLFVFAAAGRVEALRILL 285
            DD +  ++  A+A+G L  +  +L+   ++   NAS  T +H+A  +    I+E L+  GA+ DV D+KGRTP+   A  GR +A+++LL
Sbjct:   21 DDSNAVSIFDAAAKGDLSDLAEVLKEN-NINAVNASNETLLHIAAANGRVAIIEYLINKGAKLDVKDKKGRTPMHRAAEKGRDDAVKVLL 109          
BLAST of mRNA_M-pyrifera_M_contig109695.2027.1 vs. uniprot
Match: UPI0015AB90DC (protein phosphatase 1 regulatory subunit 12A isoform X1 n=2 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015AB90DC)

HSP 1 Score: 52.8 bits (125), Expect = 5.530e-5
Identity = 35/97 (36.08%), Postives = 53/97 (54.64%), Query Frame = 1
Query:   40 TALHVASARGHLEVVKILLQAGCSVQLGNASGLTPVHVAR-------TDLILEQLVEYGAREDVVDRKGRTPLFVFAAAGRVEALRILLSKPSGKAT 309
            TALHVA A+G+++V+K+LLQ G  V   +  G TP+H A          L+ + + + GA    V++ G+TPL V A    V++L  L+ K     T
Sbjct:  213 TALHVAVAKGYIQVMKVLLQCGLDVDSRDCDGWTPLHAAAHWGQEEACSLLADNMCDMGA----VNKVGQTPLDV-ADENLVDSLEELMKKQKALRT 304          
BLAST of mRNA_M-pyrifera_M_contig109695.2027.1 vs. uniprot
Match: A0A4Z1IKV1_9HELO (Uncharacterized protein n=1 Tax=Botryotinia narcissicola TaxID=278944 RepID=A0A4Z1IKV1_9HELO)

HSP 1 Score: 52.8 bits (125), Expect = 5.850e-5
Identity = 31/99 (31.31%), Postives = 53/99 (53.54%), Query Frame = 1
Query:   13 MDCGDDKSDTALHVASARGHLEVVKILLQAGCSVQLGNASGLTPVHVA---RTDLILEQLVEYGAREDVVDRKGRTPLFVFAAAGRVEALRILLSKPSG 300
            +D  DD  +TALH    R  L  VK+L+ AG S+++ N   +TP+ +A   R   I+E L+   A+ ++   K   PL +    G +  +++++ K SG
Sbjct: 1302 LDLVDDDGNTALHYLRGRTPLAWVKLLVNAGASIEIQNKDLMTPLGIAIEYRNTEIVEYLLSKKAQVNLTGGKYGAPLIIACLTGDLSLIKLVVKKGSG 1400          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig109695.2027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A1S3JVE4_LINUN6.070e-838.83ankyrin repeat domain-containing protein 39 n=2 Ta... [more]
A0A4Q3VGT4_9BURK5.840e-743.48Ankyrin repeat domain-containing protein n=1 Tax=B... [more]
A0A2C9M8T2_BIOGL5.660e-636.59Uncharacterized protein n=1 Tax=Biomphalaria glabr... [more]
A0A811YV59_NYCPR9.910e-634.04(raccoon dog) hypothetical protein n=1 Tax=Nyctere... [more]
A0A401P1T0_SCYTO1.180e-539.05Protein phosphatase 1 regulatory subunit n=1 Tax=S... [more]
UPI00200752C01.260e-538.20uncharacterized protein n=1 Tax=Purpureocillium ta... [more]
UPI0006D506E22.260e-532.98ankyrin-3-like n=1 Tax=Halyomorpha halys TaxID=286... [more]
A0A8C0H0H5_CHEAB3.290e-535.56Uncharacterized protein n=1 Tax=Chelonoidis abingd... [more]
UPI0015AB90DC5.530e-536.08protein phosphatase 1 regulatory subunit 12A isofo... [more]
A0A4Z1IKV1_9HELO5.850e-531.31Uncharacterized protein n=1 Tax=Botryotinia narcis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig109695contigM-pyrifera_M_contig109695:8..496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue1.1e-06
Seed eggNOG ortholog65071.PYU1_T009672
Hectar predicted targeting categoryother localisation
EggNOG free text desc.WW domain
EggNOG OGs1MAMC@121069,COG0666@1,KOG4177@2759
COG Functional cat.M
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size489
Cds size477
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.3988016-UTR-M-pyrifera_M_contig109695:7..191622815607.3988016-UTR-M-pyrifera_M_contig109695:7..19Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109695 8..19 +
1692277485.0036001-UTR-M-pyrifera_M_contig109695:7..191692277485.0036001-UTR-M-pyrifera_M_contig109695:7..19Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig109695 8..19 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.4159353-CDS-M-pyrifera_M_contig109695:19..4961622815607.4159353-CDS-M-pyrifera_M_contig109695:19..496Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109695 20..496 +
1692277485.0188758-CDS-M-pyrifera_M_contig109695:19..4961692277485.0188758-CDS-M-pyrifera_M_contig109695:19..496Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig109695 20..496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig109695.2027.1prot_M-pyrifera_M_contig109695.2027.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig109695 20..496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig109695.2027.1

>prot_M-pyrifera_M_contig109695.2027.1 ID=prot_M-pyrifera_M_contig109695.2027.1|Name=mRNA_M-pyrifera_M_contig109695.2027.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=159bp
MDCGDDKSDTALHVASARGHLEVVKILLQAGCSVQLGNASGLTPVHVART
DLILEQLVEYGAREDVVDRKGRTPLFVFAAAGRVEALRILLSKPSGKATL
HIADSRGDTPLHAAAANGHEECIKLLLEAGADARTTNNAGFRPHYLAETN
KHSHCLPLL
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mRNA from alignment at M-pyrifera_M_contig109695:8..496+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig109695.2027.1 ID=mRNA_M-pyrifera_M_contig109695.2027.1|Name=mRNA_M-pyrifera_M_contig109695.2027.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=489bp|location=Sequence derived from alignment at M-pyrifera_M_contig109695:8..496+ (Macrocystis pyrifera P11B4 male)
CGGAGTGAGTGGATGGATTGTGGAGATGACAAGTCTGACACTGCATTGCA CGTTGCATCAGCTCGAGGTCACTTGGAAGTGGTCAAGATTCTGCTGCAAG CGGGTTGTAGTGTGCAGTTAGGGAATGCTTCTGGGCTCACTCCAGTGCAC GTGGCTCGCACTGACTTGATTCTGGAGCAGCTGGTGGAGTATGGGGCAAG AGAGGACGTTGTGGACAGGAAAGGGAGGACGCCCTTGTTTGTCTTTGCTG CCGCAGGGAGAGTGGAGGCACTTCGGATTTTGCTCTCCAAACCCTCTGGA AAAGCTACACTTCACATTGCAGACTCCAGAGGTGACACTCCTCTTCACGC GGCAGCTGCCAACGGACACGAGGAGTGCATCAAGCTGCTGCTTGAAGCTG GAGCCGATGCCAGAACGACCAACAATGCTGGGTTTCGACCTCACTACCTC GCAGAGACAAACAAACACTCCCACTGCCTCCCTCTCCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig109695:8..496+

>mRNA_M-pyrifera_M_contig109695.2027.1 ID=mRNA_M-pyrifera_M_contig109695.2027.1|Name=mRNA_M-pyrifera_M_contig109695.2027.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=954bp|location=Sequence derived from alignment at M-pyrifera_M_contig109695:8..496+ (Macrocystis pyrifera P11B4 male)
ATGGATTGTGGAGATGACAAGTCTGACACTGCATTGCACGTTGCATCAGC
TCGAGGTCACTTGGAAGTGGTCAAGATTCTGCTGCAAGCGGGTTGTAGTG
TGCAGTTAGGGAATGCTTCTGGGCTCACTCCAGTGCACGTGGCTCGCACT
GACTTGATTCTGGAGCAGCTGGTGGAGTATGGGGCAAGAGAGGACGTTGT
GGACAGGAAAGGGAGGACGCCCTTGTTTGTCTTTGCTGCCGCAGGGAGAG
TGGAGGCACTTCGGATTTTGCTCTCCAAACCCTCTGGAAAAGCTACACTT
CACATTGCAGACTCCAGAGGTGACACTCCTCTTCACGCGGCAGCTGCCAA
CGGACACGAGGAGTGCATCAAGCTGCTGCTTGAAGCTGGAGCCGATGCCA
GAACGACCAACAATGCTGGGTTTCGACCTCACTACCTCGCAGAGACAAAC
AAACACTCCCACTGCCTCCCTCTCCTCATGGATTGTGGAGATGACAAGTC
TGACACTGCATTGCACGTTGCATCAGCTCGAGGTCACTTGGAAGTGGTCA
AGATTCTGCTGCAAGCGGGTTGTAGTGTGCAGTTAGGGAATGCTTCTGGG
CTCACTCCAGTGCACGTGGCTCGCACTGACTTGATTCTGGAGCAGCTGGT
GGAGTATGGGGCAAGAGAGGACGTTGTGGACAGGAAAGGGAGGACGCCCT
TGTTTGTCTTTGCTGCCGCAGGGAGAGTGGAGGCACTTCGGATTTTGCTC
TCCAAACCCTCTGGAAAAGCTACACTTCACATTGCAGACTCCAGAGGTGA
CACTCCTCTTCACGCGGCAGCTGCCAACGGACACGAGGAGTGCATCAAGC
TGCTGCTTGAAGCTGGAGCCGATGCCAGAACGACCAACAATGCTGGGTTT
CGACCTCACTACCTCGCAGAGACAAACAAACACTCCCACTGCCTCCCTCT
CCTC
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