mRNA_M-pyrifera_M_contig87169.20269.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87169.20269.1
Unique NamemRNA_M-pyrifera_M_contig87169.20269.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87169.20269.1 vs. uniprot
Match: A0A8J2K592_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2K592_9HEXA)

HSP 1 Score: 108 bits (269), Expect = 4.330e-27
Identity = 59/137 (43.07%), Postives = 88/137 (64.23%), Query Frame = 1
Query:   46 VRFGALAVCIHDYFYQTNITSGPSMYPTLDEEGYAVLVNVWKLRERRVRRHEVVVFESPRPRHGKHTMCKRVLGVEGDVVLVGGGTRKMVVPKGHVWVEGDNPFNSGDSRAFGPIPEALVVGIATWRIFPPTKIAPL 456
            +R+GA+  CI +Y  +  I +GPSM PT+      ++  +      R+ R+ +VV +SP   + K+++CKRV+ + GD VL+  GT  MV PKGHVW+EGDN  NS DSR++GPIP  L+ G A +R++PP+ I  L
Sbjct:   20 IRWGAILHCILEYGAEIAICTGPSMEPTIQSNDRILMERI-SSHYGRIPRNSIVVSKSPS--NPKNSVCKRVIAIAGDQVLIPDGTTTMV-PKGHVWLEGDNFQNSLDSRSYGPIPIGLIQGRAIFRVWPPSAIGTL 152          
BLAST of mRNA_M-pyrifera_M_contig87169.20269.1 vs. uniprot
Match: W7TET3_9STRA (Mitochondrial inner membrane protease subunit 1 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TET3_9STRA)

HSP 1 Score: 106 bits (265), Expect = 5.200e-26
Identity = 59/159 (37.11%), Postives = 95/159 (59.75%), Query Frame = 1
Query:    1 SMAEFAEAGRF-VGQVVRFGALAVCIHDYFYQTNITSGPSMYPTLDEEGYAVLVNVWKLR-ERRVRRHEVVVFESPRPRHGKHTMCKRVLGVEGDVVLVGGG-----TRKMVVPKGHVWVEGDNPFNSGDSRAFGPIPEALVVGIATWRIFPPTKIAPL 456
            S AE  +  R+ V  +V+F     C+H+Y       +GPSM PT +E G  V+V+   ++  R +++ ++V+  SP   +  +T+CKRVLG+ GD +L+         + + VP G +W+EGDNPFNS DSR +GP+P ALV G+  ++++P  +  PL
Sbjct:   21 SSAELLDETRYNVVDLVKFSCTLYCLHEYVADVTALAGPSMLPTFNEAGDIVVVDCLHVKLGRPLQKGDIVIARSPS--NPSNTVCKRVLGLPGDRILIQPQYWYQQEQVLQVPPGMLWLEGDNPFNSTDSRTYGPVPMALVKGLVAFKLYPLHEFGPL 177          
BLAST of mRNA_M-pyrifera_M_contig87169.20269.1 vs. uniprot
Match: A0A1Y1I0M7_KLENI (Peptidase S24/S26A/S26B/S26C family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I0M7_KLENI)

HSP 1 Score: 105 bits (261), Expect = 8.380e-26
Identity = 57/141 (40.43%), Postives = 81/141 (57.45%), Query Frame = 1
Query:   37 GQVVRFGALAVCIHDYFYQTNITSGPSMYPTLDEEGYAVLVNVWKLRERRVRRHEVVVFESPRPRHGKHTMCKRVLGVEGDVVLVG-----GGTRKMVVPKGHVWVEGDNPFNSGDSRAFGPIPEALVVGIATWRIFPPTK 444
            G VV+FG+   C   Y        GPSM P+ + EG  + V     R  R++  +VV  +SPR  +    +CKR+LG+EGD + V         R + VPKGHVW++GDN F S DSR +GP+P ALV G   ++I+PP++
Sbjct:   17 GVVVQFGSFIYCFGTYVMDVTTCVGPSMLPSFNAEGNIIFVEHISPRLGRLKAGDVVTAQSPR--NPNAVICKRILGLEGDRIRVPPTMPRDSIRLVTVPKGHVWLQGDNQFVSRDSREYGPVPAALVKGKVVFKIWPPSQ 155          
BLAST of mRNA_M-pyrifera_M_contig87169.20269.1 vs. uniprot
Match: A0A4C1VZM6_EUMVA (Mitochondrial inner membrane protease subunit n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1VZM6_EUMVA)

HSP 1 Score: 104 bits (260), Expect = 8.810e-26
Identity = 54/141 (38.30%), Postives = 83/141 (58.87%), Query Frame = 1
Query:   31 FVGQVVRFGALAVCIHDYFYQTNITSGPSMYPTLDEEGYAVLVNVWKLRERRVRRHEVVVFESPRPRHGKHTMCKRVLGVEGDVVLVGGGTRKMVVPKGHVWVEGDNPFNSGDSRAFGPIPEALVVGIATWRIFPPTKIAP 453
            F G V+++  +  C  +Y     + SGPSM PTL+ + + +L      R +R+RR ++V+ +SP   + +  +CKR+ G+ GD +      R  +VP+GHVW+EGDN  NS DSR FGP+P  L+   A  R++P  KI P
Sbjct:   15 FAGYVLQYACITHCAFEYIGDFVMCSGPSMEPTLESD-HILLTEHITPRLQRLRRGDIVIAKSPT--NPRQNICKRITGLPGDKIRTSFTRRSQIVPRGHVWLEGDNSSNSADSRVFGPVPMGLIRSRAILRVWPVHKIDP 152          
BLAST of mRNA_M-pyrifera_M_contig87169.20269.1 vs. uniprot
Match: UPI001040D6C2 (mitochondrial inner membrane protease subunit 1 n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI001040D6C2)

HSP 1 Score: 104 bits (259), Expect = 1.280e-25
Identity = 56/142 (39.44%), Postives = 83/142 (58.45%), Query Frame = 1
Query:   31 FVGQVVRFGALAVCIHDYFYQTNITSGPSMYPTLDEEGYAVLVNVWKLRERRVRRHEVVVFESPRPRHGKHTMCKRVLGVEGDVVLVGGGTRKMVVPKGHVWVEGDNPFNSGDSRAFGPIPEALVVGIATWRIFPPTKIAPL 456
            FVG V+++  +  C  +Y     + SGPSM PTL+        +V   R +R+RR ++V+ +SP   + K  +CKR++G+ GD V      R  VVP+GHVW+EGDN  NS DSR +GP+P+ L+      R++P  KI  L
Sbjct:   13 FVGYVLQYACVTHCTFEYIGDFVMCSGPSMEPTLESNNILFTEHVTP-RLQRLRRGDIVIAKSPS--NPKQNICKRIVGLPGDKVRGHFPKRSQVVPRGHVWLEGDNSSNSADSRVYGPVPQGLIRSRVVCRVWPLDKITSL 151          
BLAST of mRNA_M-pyrifera_M_contig87169.20269.1 vs. uniprot
Match: A0A7S2DNW6_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DNW6_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.820e-25
Identity = 58/146 (39.73%), Postives = 84/146 (57.53%), Query Frame = 1
Query:   43 VVRFGALAVCIHDYFYQTNITSGPSMYPTLDEEGYAVLVNVWKLRERRVRRHEVVVFESPRPRHGKHTMCKRVLGVEGDVVLVG--------GGTRKMVVPKGHVWVEGDNPFNSGDSRAFGPIPEALVVGIATWRIFPPTKIAPL 456
            ++ FG L  C+H+Y     +  GPSM PT +  G  V++     R +R RR +VV+ +SP       T+CKR+ G+EGD V +         G T K  +PKGHVW+EGDN  NS DSR +GP+P AL+ G    +I+P ++  P+
Sbjct:   23 LINFGCLLHCVHEYVVDVTMCIGPSMQPTFNSIGDVVIMERVTPRLQRFRRGDVVIAKSPTTID--QTVCKRIRGLEGDTVTLSRSGSGGMSGATIK--IPKGHVWLEGDNSANSTDSRYYGPVPAALIKGRVALKIWPLSECGPV 164          
BLAST of mRNA_M-pyrifera_M_contig87169.20269.1 vs. uniprot
Match: A0A6J1X654_GALME (Mitochondrial inner membrane protease subunit n=1 Tax=Galleria mellonella TaxID=7137 RepID=A0A6J1X654_GALME)

HSP 1 Score: 102 bits (255), Expect = 4.990e-25
Identity = 52/142 (36.62%), Postives = 83/142 (58.45%), Query Frame = 1
Query:   31 FVGQVVRFGALAVCIHDYFYQTNITSGPSMYPTLDEEGYAVLVNVWKLRERRVRRHEVVVFESPRPRHGKHTMCKRVLGVEGDVVLVGGGTRKMVVPKGHVWVEGDNPFNSGDSRAFGPIPEALVVGIATWRIFPPTKIAPL 456
            FVG  +++  +  C  +Y     + SGPSM PTL+     +  ++   + +R+RR ++V+ +SP   + K  +CKR++G+ GD V      R  +VP+GHVW+EGDN  NS DSR +GP+P+ L+      R++P  KI  L
Sbjct:   12 FVGYALQYACITHCTFEYVGDLVVCSGPSMEPTLESNNILLTEHI-SPKLQRLRRGDIVISKSPN--NPKQNICKRIVGMPGDKVRGHFPKRSQIVPRGHVWLEGDNSSNSADSRIYGPVPQGLIRSRVVCRVWPLDKITSL 150          
BLAST of mRNA_M-pyrifera_M_contig87169.20269.1 vs. uniprot
Match: C1FFX1_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FFX1_MICCC)

HSP 1 Score: 102 bits (254), Expect = 6.330e-25
Identity = 53/136 (38.97%), Postives = 82/136 (60.29%), Query Frame = 1
Query:   55 GALAVCIHDYFYQTNITSGPSMYPTLDEEGYAVLVNVWKLRERRVRRHEVVVFESPRPRHGKHTMCKRVLGVEGDVVLVG-----GGTRKMVVPKGHVWVEGDNPFNSGDSRAFGPIPEALVVGIATWRIFPPTKI 447
            G L   IH+Y     +  GPSM PT +  G  VLV    +    +RR ++V+ +SP   + +HT+CKRVLG  GDV+ V      GGT+++ VP GH+W++GDN  NS DSR +GP+P  ++ G    +++P +++
Sbjct:    2 GCLVNVIHNYGVHVTMCLGPSMLPTFNRSGDFVLVEQLSVMTDNIRRGDIVIAKSPT--NPRHTVCKRVLGRGGDVIAVPKAGSFGGTQRVEVPPGHIWLQGDNKDNSTDSRDYGPVPFGMLRGKVFLKVWPLSEL 135          
BLAST of mRNA_M-pyrifera_M_contig87169.20269.1 vs. uniprot
Match: A0A8J6K185_ELECQ (Mitochondrial inner membrane protease subunit n=1 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6K185_ELECQ)

HSP 1 Score: 102 bits (255), Expect = 6.870e-25
Identity = 54/139 (38.85%), Postives = 85/139 (61.15%), Query Frame = 1
Query:   31 FVGQVVRFGALAVCIHDYFYQTNITSGPSMYPTLDEEGYAVLVNVWKLRERRVRRHEVVVFESPRPRHGKHTMCKRVLGVEGDVVLVGGGT----RKMVVPKGHVWVEGDNPFNSGDSRAFGPIPEALVVGIATWRIFP 435
            F+G  +++G +A C  +Y  +  I SGPSM PT+ ++   V  ++ +L      + ++++ +SP   +  H +CKRV+G+EGD V   G      R   VP+GHVW+EGDN  NS DSR++GP+P AL+ G   +RI+P
Sbjct:   12 FLGYAIQYGCIAHCTFEYLGKIVICSGPSMQPTIMDDDILVCDSLSRLLSS-FNKGDIIIAKSPS--NPNHVICKRVIGLEGDKVCTSGPADFIKRHTYVPRGHVWLEGDNLDNSTDSRSYGPVPYALIQGRLFFRIWP 147          
BLAST of mRNA_M-pyrifera_M_contig87169.20269.1 vs. uniprot
Match: A0A3S2P7M8_CHISP (Mitochondrial inner membrane protease subunit n=1 Tax=Chilo suppressalis TaxID=168631 RepID=A0A3S2P7M8_CHISP)

HSP 1 Score: 102 bits (254), Expect = 7.240e-25
Identity = 55/142 (38.73%), Postives = 83/142 (58.45%), Query Frame = 1
Query:   31 FVGQVVRFGALAVCIHDYFYQTNITSGPSMYPTLDEEGYAVLVNVWKLRERRVRRHEVVVFESPRPRHGKHTMCKRVLGVEGDVVLVGGGTRKMVVPKGHVWVEGDNPFNSGDSRAFGPIPEALVVGIATWRIFPPTKIAPL 456
            F+G V ++  +  C  +Y     + SGPSM PTL+     V  ++   R +R++R ++V+ +SP   + K  +CKR++G+ GD V      R  VVPKGHVW+EGDN  NS DSR +GP+P+ L+      R++P  KI  L
Sbjct:   13 FLGYVFQYACVTHCTFEYIGDFVMCSGPSMEPTLESNNILVTEHITP-RIQRLQRGDIVIAKSPS--NPKQNICKRIVGMPGDRVKGYFPRRSQVVPKGHVWLEGDNSHNSADSRLYGPVPQGLIRSRVICRVWPLDKITSL 151          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87169.20269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J2K592_9HEXA4.330e-2743.07Hypothetical protein n=1 Tax=Allacma fusca TaxID=3... [more]
W7TET3_9STRA5.200e-2637.11Mitochondrial inner membrane protease subunit 1 n=... [more]
A0A1Y1I0M7_KLENI8.380e-2640.43Peptidase S24/S26A/S26B/S26C family protein n=1 Ta... [more]
A0A4C1VZM6_EUMVA8.810e-2638.30Mitochondrial inner membrane protease subunit n=1 ... [more]
UPI001040D6C21.280e-2539.44mitochondrial inner membrane protease subunit 1 n=... [more]
A0A7S2DNW6_9STRA1.820e-2539.73Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A6J1X654_GALME4.990e-2536.62Mitochondrial inner membrane protease subunit n=1 ... [more]
C1FFX1_MICCC6.330e-2538.97Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A8J6K185_ELECQ6.870e-2538.85Mitochondrial inner membrane protease subunit n=1 ... [more]
A0A3S2P7M8_CHISP7.240e-2538.73Mitochondrial inner membrane protease subunit n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87169contigM-pyrifera_M_contig87169:1..539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score101.7
Seed ortholog evalue3.1e-19
Seed eggNOG ortholog296587.XP_002507898.1
KEGG koko:K09647
KEGG Pathwayko03060,map03060
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Peptidase S24-like
EggNOG OGs34MTY@3041,37TSB@33090,COG0681@1,KOG0171@2759
COG Functional cat.O
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03029
Exons2
Model size456
Cds size453
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87169.20269.1prot_M-pyrifera_M_contig87169.20269.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87169 4..539 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816781.3075957-UTR-M-pyrifera_M_contig87169:0..31622816781.3075957-UTR-M-pyrifera_M_contig87169:0..3Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig87169 1..3 +
1692278174.8060834-UTR-M-pyrifera_M_contig87169:0..31692278174.8060834-UTR-M-pyrifera_M_contig87169:0..3Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig87169 1..3 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816781.3214104-CDS-M-pyrifera_M_contig87169:3..1021622816781.3214104-CDS-M-pyrifera_M_contig87169:3..102Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87169 4..102 +
1692278174.816974-CDS-M-pyrifera_M_contig87169:3..1021692278174.816974-CDS-M-pyrifera_M_contig87169:3..102Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87169 4..102 +
1622816781.334465-CDS-M-pyrifera_M_contig87169:185..5391622816781.334465-CDS-M-pyrifera_M_contig87169:185..539Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87169 186..539 +
1692278174.8262587-CDS-M-pyrifera_M_contig87169:185..5391692278174.8262587-CDS-M-pyrifera_M_contig87169:185..539Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87169 186..539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87169.20269.1

>prot_M-pyrifera_M_contig87169.20269.1 ID=prot_M-pyrifera_M_contig87169.20269.1|Name=mRNA_M-pyrifera_M_contig87169.20269.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=151bp
MAEFAEAGRFVGQVVRFGALAVCIHDYFYQTNITSGPSMYPTLDEEGYAV
LVNVWKLRERRVRRHEVVVFESPRPRHGKHTMCKRVLGVEGDVVLVGGGT
RKMVVPKGHVWVEGDNPFNSGDSRAFGPIPEALVVGIATWRIFPPTKIAP
L
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mRNA from alignment at M-pyrifera_M_contig87169:1..539+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87169.20269.1 ID=mRNA_M-pyrifera_M_contig87169.20269.1|Name=mRNA_M-pyrifera_M_contig87169.20269.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=539bp|location=Sequence derived from alignment at M-pyrifera_M_contig87169:1..539+ (Macrocystis pyrifera P11B4 male)
AGTATGGCAGAGTTTGCCGAAGCTGGGAGGTTTGTGGGGCAGGTAGTTCG ATTTGGAGCCCTTGCTGTGTGTATTCATGACTATTTCTACCAGACTAACA TAGTACCAACCCCTATCCCTCCCTCCCCAAACCTCTTCTCCCCAGAAAAA CTCCCCAACCCGCTTTCCACCTTCTCTCTTTACAGACGTCAGGCCCTTCA ATGTACCCAACACTAGATGAAGAAGGGTATGCAGTGTTAGTGAATGTTTG GAAGCTGCGAGAACGGCGTGTTCGGCGACATGAGGTTGTTGTTTTTGAGT CTCCGAGGCCTCGTCATGGGAAACACACAATGTGCAAACGGGTTCTTGGA GTAGAAGGGGATGTTGTGTTGGTGGGTGGAGGAACGAGGAAGATGGTGGT CCCCAAAGGCCATGTTTGGGTGGAAGGAGACAACCCGTTCAATTCCGGAG ACTCTAGAGCCTTCGGACCCATACCCGAAGCACTGGTGGTAGGAATCGCC ACATGGCGCATCTTTCCACCCACAAAAATCGCCCCACTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87169:1..539+

>mRNA_M-pyrifera_M_contig87169.20269.1 ID=mRNA_M-pyrifera_M_contig87169.20269.1|Name=mRNA_M-pyrifera_M_contig87169.20269.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=906bp|location=Sequence derived from alignment at M-pyrifera_M_contig87169:1..539+ (Macrocystis pyrifera P11B4 male)
ATGGCAGAGTTTGCCGAAGCTGGGAGGTTTGTGGGGCAGGTAGTTCGATT
TGGAGCCCTTGCTGTGTGTATTCATGACTATTTCTACCAGACTAACATAA
TGGCAGAGTTTGCCGAAGCTGGGAGGTTTGTGGGGCAGGTAGTTCGATTT
GGAGCCCTTGCTGTGTGTATTCATGACTATTTCTACCAGACTAACATAAC
GTCAGGCCCTTCAATGTACCCAACACTAGATGAAGAAGGGTATGCAGTGT
TAGTGAATGTTTGGAAGCTGCGAGAACGGCGTGTTCGGCGACATGAGGTT
GTTGTTTTTGAGTCTCCGAGGCCTCGTCATGGGAAACACACAATGTGCAA
ACGGGTTCTTGGAGTAGAAGGGGATGTTGTGTTGGTGGGTGGAGGAACGA
GGAAGATGGTGGTCCCCAAAGGCCATGTTTGGGTGGAAGGAGACAACCCG
TTCAATTCCGGAGACTCTAGAGCCTTCGGACCCATACCCGAAGCACTGGT
GGTAGGAATCGCCACATGGCGCATCTTTCCACCCACAAAAATCGCCCCAC
TCACGTCAGGCCCTTCAATGTACCCAACACTAGATGAAGAAGGGTATGCA
GTGTTAGTGAATGTTTGGAAGCTGCGAGAACGGCGTGTTCGGCGACATGA
GGTTGTTGTTTTTGAGTCTCCGAGGCCTCGTCATGGGAAACACACAATGT
GCAAACGGGTTCTTGGAGTAGAAGGGGATGTTGTGTTGGTGGGTGGAGGA
ACGAGGAAGATGGTGGTCCCCAAAGGCCATGTTTGGGTGGAAGGAGACAA
CCCGTTCAATTCCGGAGACTCTAGAGCCTTCGGACCCATACCCGAAGCAC
TGGTGGTAGGAATCGCCACATGGCGCATCTTTCCACCCACAAAAATCGCC
CCACTC
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