mRNA_M-pyrifera_M_contig87166.20268.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87166.20268.1
Unique NamemRNA_M-pyrifera_M_contig87166.20268.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87166.20268.1 vs. uniprot
Match: A0A2E7KFM0_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KFM0_9PLAN)

HSP 1 Score: 286 bits (733), Expect = 1.770e-97
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 1
Query:    1 VNLSANQTLEVLLNEQKQTRLKRAGKLLILWGVLHLHLTLLLAVYPMISAINEGMQQIIEQPAQKQAPEQVSARFRSIMQTAVTLVEICLWAYPVICLLTGVWILQTRHLTGCVVGAALVCVSVPLGTILGIWTLILLRDSEIRTLFDPQTSARNLSDA 477
            +NLSANQTLEVLLNEQKQTRLKRAGKLLILWGVLHL  TLLLAVYPMISA+NEGMQQIIEQPAQKQAPEQVSARFRSIMQTAVTLVEICLWAYPVICLLTGVWILQTRHLTGCVVGAALVCVSVPLGT+LGIWTLILLRDSEIRTLFDPQTSARNLSDA
Sbjct:    1 MNLSANQTLEVLLNEQKQTRLKRAGKLLILWGVLHL--TLLLAVYPMISAMNEGMQQIIEQPAQKQAPEQVSARFRSIMQTAVTLVEICLWAYPVICLLTGVWILQTRHLTGCVVGAALVCVSVPLGTMLGIWTLILLRDSEIRTLFDPQTSARNLSDA 157          
BLAST of mRNA_M-pyrifera_M_contig87166.20268.1 vs. uniprot
Match: A0A518A3N5_9PLAN (Uncharacterized protein n=5 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A3N5_9PLAN)

HSP 1 Score: 174 bits (440), Expect = 3.100e-53
Identity = 90/128 (70.31%), Postives = 108/128 (84.38%), Query Frame = 1
Query:   82 LILWGVLHLHLTLLLAVYPMISAINEGMQQIIEQPAQKQAPEQVSARFRSIMQTAVTLVEICLWAYPVICLLTGVWILQTRHLTGCVVGAALVCVSVPLGTILGIWTLILLRDSEIRTLFDPQTSARN 465
            +I+WGVL L  TL+LA+ PM SA+NEGM+QIIE P  +Q   + S +F+SIMQTAVTLVE+C WAYPV+CLLTGVWILQ RHLT CV+GAALVCV VP+GTILGIW+LILLRD+E+R+LFD QTS  N
Sbjct:    1 MIIWGVLAL--TLVLAINPMFSAMNEGMEQIIEHPPGQQEAIKTSTQFKSIMQTAVTLVEVCFWAYPVVCLLTGVWILQARHLTWCVIGAALVCVMVPVGTILGIWSLILLRDAELRSLFDQQTSELN 126          
BLAST of mRNA_M-pyrifera_M_contig87166.20268.1 vs. uniprot
Match: A0A6I6A8N4_9PLAN (Uncharacterized protein n=3 Tax=Gimesia TaxID=1649453 RepID=A0A6I6A8N4_9PLAN)

HSP 1 Score: 59.3 bits (142), Expect = 3.770e-8
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 1
Query:  292 LLTGVWILQTRHLTGCVVGAALVCVSVPLGTILGIWTLILLRDSEIRTLFDPQT 453
            L TG+ I + RH T CVVG+AL+C+S PLGT LGIW+L+ L D   R LF  +T
Sbjct:   89 LATGINIRRRRHFTFCVVGSALICISFPLGTALGIWSLLTLYDKHTRPLFAERT 142          
BLAST of mRNA_M-pyrifera_M_contig87166.20268.1 vs. uniprot
Match: A0A2E7KFL5_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KFL5_9PLAN)

HSP 1 Score: 57.8 bits (138), Expect = 1.410e-7
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 1
Query:  277 YPVICLLTGVWILQTRHLTGCVVGAALVCVSVPLGTILGIWTLILLRDSEIRTLFDPQTSARNLSDA 477
            +  I L  G+ I + RH T CVVG+AL+C S PLGT LGIW+L+ L + + R LF+ +T   +L DA
Sbjct:   83 FGAILLAAGINIRRRRHFTFCVVGSALICTSFPLGTALGIWSLLTLLNKQTRPLFEQRT---DLGDA 146          
BLAST of mRNA_M-pyrifera_M_contig87166.20268.1 vs. uniprot
Match: A0A355GDR4_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A355GDR4_9PLAN)

HSP 1 Score: 55.5 bits (132), Expect = 8.680e-7
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  214 SARFRSIMQTAVTLVEICLWAYPVICLLTGVWILQTRHLTGCVVGAALVCVSVPLGTILGIWTLILLRDSEIRTLF 441
            S +F SI ++ +  + I    + +IC +TGV IL+      C+VGAA++C+  PLGT+LG WTL +L   E + LF
Sbjct:   58 SDQFDSIQRSMLLGMWIWTVFFSLICFMTGVCILRRISHRSCLVGAAVICIVFPLGTVLGAWTLFVLTSRETKALF 133          
BLAST of mRNA_M-pyrifera_M_contig87166.20268.1 vs. uniprot
Match: A0A518FM62_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FM62_9PLAN)

HSP 1 Score: 55.5 bits (132), Expect = 1.040e-6
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1
Query:  292 LLTGVWILQTRHLTGCVVGAALVCVSVPLGTILGIWTLILLRDSEIRTLFDPQTS 456
            L TG+ + + RH T CV+G+AL+C S PLGT LG+W+L+ L +   R LF  +TS
Sbjct:   88 LATGINLRRRRHFTFCVIGSALICPSFPLGTALGVWSLLTLYNQHTRPLFAERTS 142          
BLAST of mRNA_M-pyrifera_M_contig87166.20268.1 vs. uniprot
Match: A0A518A3P0_9PLAN (Uncharacterized protein n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A3P0_9PLAN)

HSP 1 Score: 54.3 bits (129), Expect = 2.820e-6
Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 1
Query:  292 LLTGVWILQTRHLTGCVVGAALVCVSVPLGTILGIWTLILLRDSEIRTLFDPQTS 456
            L TG+ + + RH T CV+G+AL+C S PLGT LG+W+L+ L +   R LF  +T+
Sbjct:   88 LATGINLRRRRHFTFCVIGSALICPSFPLGTALGVWSLLTLYNQHTRPLFAERTA 142          
BLAST of mRNA_M-pyrifera_M_contig87166.20268.1 vs. uniprot
Match: A0A517VZT2_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517VZT2_9PLAN)

HSP 1 Score: 53.5 bits (127), Expect = 5.380e-6
Identity = 23/51 (45.10%), Postives = 39/51 (76.47%), Query Frame = 1
Query:  292 LLTGVWILQTRHLTGCVVGAALVCVSVPLGTILGIWTLILLRDSEIRTLFD 444
            L TG+++ Q ++   C++GAA+ C+S PLGT LG+WTL++L D++ + LF+
Sbjct:   87 LFTGLFLFQKKNRLFCIIGAAISCLSFPLGTALGVWTLLILFDTKTKPLFE 137          
BLAST of mRNA_M-pyrifera_M_contig87166.20268.1 vs. uniprot
Match: A6CGS9_9PLAN (Uncharacterized protein n=6 Tax=Planctomycetaceae TaxID=126 RepID=A6CGS9_9PLAN)

HSP 1 Score: 53.1 bits (126), Expect = 8.000e-6
Identity = 44/136 (32.35%), Postives = 76/136 (55.88%), Query Frame = 1
Query:   52 QTRLKRAGKL-LILWGVLHLHLTLLLAVYPMISAINEGMQQIIEQPAQKQAPEQVSARFRSIMQTAVTLVEICLWAYPVI----CLLTGVWILQTRHLTGCVVGAALVCVSVPLGTILGIWTLILLRDSEIRTLFD 444
            + +LK AG L ++L G   L L LL   Y M+ ++ E  +QI + P ++  P+    +    MQ ++ L+   +    ++     L+TG+ + +    T C++G+A VC+  PLGT LG+WTL++L D + + LFD
Sbjct:    9 EKQLKVAGVLFMVLAGFCLLGLLLLPLHYVMMQSVMESFEQI-DFPKRQDRPD--PRQMIQTMQPSLYLMYGFMGTLGLLFGGMTLVTGINLYRKTRRTVCIIGSAAVCIWFPLGTALGVWTLLILFDKQAQPLFD 141          
BLAST of mRNA_M-pyrifera_M_contig87166.20268.1 vs. uniprot
Match: A0A517VAU7_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VAU7_9PLAN)

HSP 1 Score: 51.2 bits (121), Expect = 4.160e-5
Identity = 37/140 (26.43%), Postives = 73/140 (52.14%), Query Frame = 1
Query:   52 QTRLKRAGKLLILWGVLHLHLTLLLAV-YPMISAINEGMQQI-IEQPAQKQAPEQVSARFRSIMQTAVTLVEICLWAYPVICLLTGVWILQTRHLTGCVVGAALVCVSVPLGTILGIWTLILLRDSEIRTLFDPQTSARN 465
            + +LK AG L +      + + LLL + Y M+ ++ E  +QI   +   +  P Q+    +  +     L+ +    +  +  LTG+ + +    + C++G+A VC+  P+GT+LG+WTL++L D + + LF+     R+
Sbjct:    9 EKQLKVAGVLFMALAGFSVMMLLLLPLHYIMLQSVMETFEQIDFPKHQNRPDPRQMFQNMQPTIYLMYGLLGLFCLLFGGMSFLTGINLYRKTQRSICIIGSAAVCIWFPIGTVLGVWTLMILFDKQAQPLFEASNQLRD 148          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87166.20268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A2E7KFM0_9PLAN1.770e-9796.86Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A518A3N5_9PLAN3.100e-5370.31Uncharacterized protein n=5 Tax=Gimesia panareensi... [more]
A0A6I6A8N4_9PLAN3.770e-855.56Uncharacterized protein n=3 Tax=Gimesia TaxID=1649... [more]
A0A2E7KFL5_9PLAN1.410e-747.76Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A355GDR4_9PLAN8.680e-740.79Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A518FM62_9PLAN1.040e-649.09Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
A0A518A3P0_9PLAN2.820e-647.27Uncharacterized protein n=2 Tax=Gimesia panareensi... [more]
A0A517VZT2_9PLAN5.380e-645.10Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
A6CGS9_9PLAN8.000e-632.35Uncharacterized protein n=6 Tax=Planctomycetaceae ... [more]
A0A517VAU7_9PLAN4.160e-526.43Uncharacterized protein n=1 Tax=Gimesia algae TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87166contigM-pyrifera_M_contig87166:144..623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size480
Cds size480
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816781.2710354-CDS-M-pyrifera_M_contig87166:143..6231622816781.2710354-CDS-M-pyrifera_M_contig87166:143..623Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87166 144..623 +
1692278174.7955139-CDS-M-pyrifera_M_contig87166:143..6231692278174.7955139-CDS-M-pyrifera_M_contig87166:143..623Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87166 144..623 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87166.20268.1prot_M-pyrifera_M_contig87166.20268.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87166 144..623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87166.20268.1

>prot_M-pyrifera_M_contig87166.20268.1 ID=prot_M-pyrifera_M_contig87166.20268.1|Name=mRNA_M-pyrifera_M_contig87166.20268.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=160bp
VNLSANQTLEVLLNEQKQTRLKRAGKLLILWGVLHLHLTLLLAVYPMISA
INEGMQQIIEQPAQKQAPEQVSARFRSIMQTAVTLVEICLWAYPVICLLT
GVWILQTRHLTGCVVGAALVCVSVPLGTILGIWTLILLRDSEIRTLFDPQ
TSARNLSDA*
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mRNA from alignment at M-pyrifera_M_contig87166:144..623+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87166.20268.1 ID=mRNA_M-pyrifera_M_contig87166.20268.1|Name=mRNA_M-pyrifera_M_contig87166.20268.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig87166:144..623+ (Macrocystis pyrifera P11B4 male)
GTGAATCTGTCTGCAAATCAAACTCTCGAGGTTCTTTTGAACGAACAGAA ACAAACGCGGCTCAAGCGGGCCGGTAAGCTGCTGATCCTCTGGGGCGTCC TGCATCTGCATCTGACTCTGCTGCTGGCTGTGTACCCGATGATCTCCGCG ATCAATGAGGGGATGCAGCAGATCATTGAACAGCCTGCACAGAAGCAGGC GCCGGAACAGGTCTCGGCCCGGTTTCGCTCGATCATGCAGACCGCAGTCA CGCTCGTGGAGATCTGCCTCTGGGCTTATCCCGTCATCTGCCTGTTGACC GGCGTTTGGATTCTGCAGACGCGTCACCTCACCGGGTGTGTTGTCGGGGC CGCCCTGGTCTGTGTCTCCGTTCCCCTGGGAACCATCCTCGGGATCTGGA CGCTGATCCTCCTGCGGGACTCTGAAATCAGAACCCTGTTTGATCCACAG ACGTCCGCACGGAATCTCAGCGATGCGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87166:144..623+

>mRNA_M-pyrifera_M_contig87166.20268.1 ID=mRNA_M-pyrifera_M_contig87166.20268.1|Name=mRNA_M-pyrifera_M_contig87166.20268.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig87166:144..623+ (Macrocystis pyrifera P11B4 male)
GTGAATCTGTCTGCAAATCAAACTCTCGAGGTTCTTTTGAACGAACAGAA
ACAAACGCGGCTCAAGCGGGCCGGTAAGCTGCTGATCCTCTGGGGCGTCC
TGCATCTGCATCTGACTCTGCTGCTGGCTGTGTACCCGATGATCTCCGCG
ATCAATGAGGGGATGCAGCAGATCATTGAACAGCCTGCACAGAAGCAGGC
GCCGGAACAGGTCTCGGCCCGGTTTCGCTCGATCATGCAGACCGCAGTCA
CGCTCGTGGAGATCTGCCTCTGGGCTTATCCCGTCATCTGCCTGTTGACC
GGCGTTTGGATTCTGCAGACGCGTCACCTCACCGGGTGTGTTGTCGGGGC
CGCCCTGGTCTGTGTCTCCGTTCCCCTGGGAACCATCCTCGGGATCTGGA
CGCTGATCCTCCTGCGGGACTCTGAAATCAGAACCCTGTTTGATCCACAG
ACGTCCGCACGGAATCTCAGCGATGCGTAGGTGAATCTGTCTGCAAATCA
AACTCTCGAGGTTCTTTTGAACGAACAGAAACAAACGCGGCTCAAGCGGG
CCGGTAAGCTGCTGATCCTCTGGGGCGTCCTGCATCTGCATCTGACTCTG
CTGCTGGCTGTGTACCCGATGATCTCCGCGATCAATGAGGGGATGCAGCA
GATCATTGAACAGCCTGCACAGAAGCAGGCGCCGGAACAGGTCTCGGCCC
GGTTTCGCTCGATCATGCAGACCGCAGTCACGCTCGTGGAGATCTGCCTC
TGGGCTTATCCCGTCATCTGCCTGTTGACCGGCGTTTGGATTCTGCAGAC
GCGTCACCTCACCGGGTGTGTTGTCGGGGCCGCCCTGGTCTGTGTCTCCG
TTCCCCTGGGAACCATCCTCGGGATCTGGACGCTGATCCTCCTGCGGGAC
TCTGAAATCAGAACCCTGTTTGATCCACAGACGTCCGCACGGAATCTCAG
CGATGCGTAG
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