mRNA_M-pyrifera_M_contig87155.20266.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87155.20266.1
Unique NamemRNA_M-pyrifera_M_contig87155.20266.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig87155.20266.1 vs. uniprot
Match: A0A6J0B896_NEOLC (enhancer of mRNA-decapping protein 4 n=6 Tax=Diprioninae TaxID=410274 RepID=A0A6J0B896_NEOLC)

HSP 1 Score: 79.0 bits (193), Expect = 2.680e-14
Identity = 46/112 (41.07%), Postives = 64/112 (57.14%), Query Frame = 1 
Query:   34 VARLVEKGDLQRAFNLALGASDLSVVVYLCGRVEPAQVFEP----------LLLNQFALLSLVQQLGFDLSSQTAIKLRWLRPALAALRTDEPALAQPLAAIVEGLQTGVQA 339
            V  L+++G L  AF  AL ASDL++VV +C R EP++VF P           LL Q  LLSL+QQL  DL  QT +K RWL  A+  L  D+P   + +  ++  LQ+ + A
Sbjct:  948 VLNLLQRGQLNAAFQQALSASDLNLVVLVCQRTEPSRVFSPPPGLGSGGPRCLLQQPVLLSLIQQLSADLGQQTELKYRWLEEAVMNLNPDDPVTHEHMGTVLMALQSQLTA 1059
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BLAST of mRNA_M-pyrifera_M_contig87155.20266.1 vs. uniprot
Match: A0A6J2JRG7_BOMMA (enhancer of mRNA-decapping protein 4 n=1 Tax=Bombyx mandarina TaxID=7092 RepID=A0A6J2JRG7_BOMMA)

HSP 1 Score: 78.2 bits (191), Expect = 4.810e-14
Identity = 54/129 (41.86%), Postives = 66/129 (51.16%), Query Frame = 1 
Query:   34 VARLVEKGDLQRAFNLALGASDLSVVVYLCGRVEPAQVF-EPLLLNQFALLSLVQQLGFDLSSQTAIKLRWLRPALAALRTDEPALAQPLAAIVEGLQTGVQAAFQQHKGDPAAAVLFMDLLTRCNAIK 417
            V  ++  GD+  AF LAL ASDLS+VV  C   EP+ VF  P  L Q  LLSLVQQL  D+S  T +K R+L  A+  L T  P   + L  +V  LQ  V A        P A  L M LL     +K
Sbjct:  635 VQNMISSGDVNGAFQLALSASDLSLVVTACRSAEPSLVFGPPCQLKQHVLLSLVQQLAADMSKDTQLKHRYLEEAVMNLDTSSPVTREHLPGVVAELQQQVSAFVTASPSHPLARRLRMLLLASDALLK 763
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BLAST of mRNA_M-pyrifera_M_contig87155.20266.1 vs. uniprot
Match: H9J9B1_BOMMO (Uncharacterized protein n=1 Tax=Bombyx mori TaxID=7091 RepID=H9J9B1_BOMMO)

HSP 1 Score: 78.2 bits (191), Expect = 4.960e-14
Identity = 54/129 (41.86%), Postives = 66/129 (51.16%), Query Frame = 1 
Query:   34 VARLVEKGDLQRAFNLALGASDLSVVVYLCGRVEPAQVF-EPLLLNQFALLSLVQQLGFDLSSQTAIKLRWLRPALAALRTDEPALAQPLAAIVEGLQTGVQAAFQQHKGDPAAAVLFMDLLTRCNAIK 417
            V  ++  GD+  AF LAL ASDLS+VV  C   EP+ VF  P  L Q  LLSLVQQL  D+S  T +K R+L  A+  L T  P   + L  +V  LQ  V A        P A  L M LL     +K
Sbjct:  891 VQNMISSGDVNGAFQLALSASDLSLVVTACRSAEPSLVFGPPCQLKQHVLLSLVQQLAADMSKDTQLKHRYLEEAVMNLDTSSPVTREHLPGVVAELQQQVSAFVTASPSHPLARRLRMLLLASDALLK 1019
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BLAST of mRNA_M-pyrifera_M_contig87155.20266.1 vs. uniprot
Match: UPI0018C3127C (enhancer of mRNA-decapping protein 4 isoform X1 n=3 Tax=Bombyx mori TaxID=7091 RepID=UPI0018C3127C)

HSP 1 Score: 78.2 bits (191), Expect = 4.990e-14
Identity = 54/129 (41.86%), Postives = 66/129 (51.16%), Query Frame = 1 
Query:   34 VARLVEKGDLQRAFNLALGASDLSVVVYLCGRVEPAQVF-EPLLLNQFALLSLVQQLGFDLSSQTAIKLRWLRPALAALRTDEPALAQPLAAIVEGLQTGVQAAFQQHKGDPAAAVLFMDLLTRCNAIK 417
            V  ++  GD+  AF LAL ASDLS+VV  C   EP+ VF  P  L Q  LLSLVQQL  D+S  T +K R+L  A+  L T  P   + L  +V  LQ  V A        P A  L M LL     +K
Sbjct:  970 VQNMISSGDVNGAFQLALSASDLSLVVTACRSAEPSLVFGPPCQLKQHVLLSLVQQLAADMSKDTQLKHRYLEEAVMNLDTSSPVTREHLPGVVAELQQQVSAFVTASPSHPLARRLRMLLLASDALLK 1098
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BLAST of mRNA_M-pyrifera_M_contig87155.20266.1 vs. uniprot
Match: A0A3S2M3C8_CHISP (Uncharacterized protein n=1 Tax=Chilo suppressalis TaxID=168631 RepID=A0A3S2M3C8_CHISP)

HSP 1 Score: 77.4 bits (189), Expect = 5.090e-14
Identity = 51/131 (38.93%), Postives = 66/131 (50.38%), Query Frame = 1 
Query:   34 VARLVEKGDLQRAFNLALGASDLSVVVYLCGRVEPAQVF-EPLLLNQFALLSLVQQLGFDLSSQTAIKLRWLRPALAALRTDEPALAQPLAAIVEGLQTGVQAAFQQHKGDPAAAVLFMDLLTRCNAIKLA 423
            +  L+  GD+  AF LAL ASDL++VV  C   +P  VF  P  L Q  LLSLVQQLG D+   T +K R+L  A+  L T  P   + L  +V  LQ  V A    H     A    M L+   + +K A
Sbjct:  212 IQSLISAGDVNGAFQLALSASDLALVVAACRAADPPSVFGPPCRLKQHVLLSLVQQLGADMPRDTPLKHRYLEEAIMNLDTSNPVTREHLPVVVRELQKQVMAFLSAHPTHALARQFKMLLMAADSLVKAA 342
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BLAST of mRNA_M-pyrifera_M_contig87155.20266.1 vs. uniprot
Match: UPI00103BF3C3 (enhancer of mRNA-decapping protein 4 n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103BF3C3)

HSP 1 Score: 77.8 bits (190), Expect = 6.850e-14
Identity = 52/131 (39.69%), Postives = 68/131 (51.91%), Query Frame = 1 
Query:   34 VARLVEKGDLQRAFNLALGASDLSVVVYLCGRVEPAQVF-EPLLLNQFALLSLVQQLGFDLSSQTAIKLRWLRPALAALRTDEPALAQPLAAIVEGLQTGVQAAFQQHKGDPAAAVLFMDLLTRCNAIKLA 423
            +  L+  GD+  AF LAL ASDL++V+  C   EPA+VF  P  L Q  LLSLVQQL  D+S  TA+K R+L  A+  L T  P   + L  +V  LQ  V A          A    M L+   + +K A
Sbjct: 1088 IQSLMSSGDMNGAFQLALSASDLALVMSACRAAEPARVFGPPCQLKQHVLLSLVQQLAADMSRDTALKHRYLEEAIMNLDTSNPVTREHLPVVVRELQKQVCAFLSAQPSHALARQFKMLLMAADSLVKAA 1218
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BLAST of mRNA_M-pyrifera_M_contig87155.20266.1 vs. uniprot
Match: A0A835L680_SPOEX (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=A0A835L680_SPOEX)

HSP 1 Score: 73.9 bits (180), Expect = 2.160e-13
Identity = 45/98 (45.92%), Postives = 57/98 (58.16%), Query Frame = 1 
Query:   34 VARLVEKGDLQRAFNLALGASDLSVVVYLCGRVEPAQVF-EPLLLNQFALLSLVQQLGFDLSSQTAIKLRWLRPALAALRTDEPALAQPLAAIVEGLQ 324
            +  L+  GD+  AF  AL ASDL++VV  C   EPAQVF  P  L Q  LLSLVQQL  D++  T +K R+L  A+  L T  P   + L A+V  LQ
Sbjct:   81 IQSLIASGDVNGAFQQALSASDLALVVMACRAAEPAQVFGPPCKLKQHVLLSLVQQLAADMARDTPLKHRYLEEAVMNLDTSNPVTREHLPAVVRELQ 178
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BLAST of mRNA_M-pyrifera_M_contig87155.20266.1 vs. uniprot
Match: A0A2P8YR02_BLAGE (Ge1_WD40 domain-containing protein n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8YR02_BLAGE)

HSP 1 Score: 76.3 bits (186), Expect = 2.360e-13
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = 1 
Query:   25 ELLVARLVEKGDLQRAFNLALGASDLSVVVYLCGRVEPAQVFE--PLLLNQFALLSLVQQLGFDLSSQTAIKLRWLRPALAALRTDEPALAQPLAAIVEGLQ 324
            +L + +L+ +G +  AF  AL ASDL++VV++C +V P QVF   P  L Q  LLSL+QQL  D+S+ T +K ++L  AL  L T  P   + + A+++ LQ
Sbjct: 1064 QLQIEQLISQGQINSAFQQALSASDLNLVVFICEKVNPQQVFNQTPCPLQQNVLLSLIQQLSADMSNYTELKHKYLEEALMNLDTQNPVTTEHMPAVLKSLQ 1165
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BLAST of mRNA_M-pyrifera_M_contig87155.20266.1 vs. uniprot
Match: UPI00067650CA (enhancer of mRNA-decapping protein 4 isoform X1 n=2 Tax=Papilio polytes TaxID=76194 RepID=UPI00067650CA)

HSP 1 Score: 75.9 bits (185), Expect = 3.210e-13
Identity = 51/131 (38.93%), Postives = 67/131 (51.15%), Query Frame = 1 
Query:   34 VARLVEKGDLQRAFNLALGASDLSVVVYLCGRVEPAQVF-EPLLLNQFALLSLVQQLGFDLSSQTAIKLRWLRPALAALRTDEPALAQPLAAIVEGLQTGVQAAFQQHKGDPAAAVLFMDLLTRCNAIKLA 423
            +  L+  GD+  AF LAL ASDL++VV  C   EPA+VF  P  L Q  LLSLVQQL  D+   T +K R+L  A+  L T  P   + L  ++  LQ  V A    + G        M LL   + +K A
Sbjct: 1065 IQSLMSSGDVNGAFQLALSASDLALVVAACRAAEPARVFGPPCRLKQNVLLSLVQQLAADMQRDTQLKHRYLEEAIMNLDTTNPVTREHLPVVLRELQKQVMAFLSANPGHALTRQFRMLLLAADSLVKAA 1195
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BLAST of mRNA_M-pyrifera_M_contig87155.20266.1 vs. uniprot
Match: A0A5B7DWR7_PORTR (Enhancer of mRNA-decapping protein 4 n=5 Tax=Portunus trituberculatus TaxID=210409 RepID=A0A5B7DWR7_PORTR)

HSP 1 Score: 75.9 bits (185), Expect = 3.260e-13
Identity = 44/120 (36.67%), Postives = 67/120 (55.83%), Query Frame = 1 
Query:   34 VARLVEKGDLQRAFNLALGASDLSVVVYLCGRVEPAQVFE--PLLLNQFALLSLVQQLGFDLSSQTAIKLRWLRPALAALRTDEPALAQPLAAIVEGLQTGVQAAFQQHKGDPAAAVLFM 387
            V  L+ +G    AF  AL ASDLS+V+++C RV P QVF   P  L+Q  LLSLV QL +DL+  T +KL++L  A+  L +  P   + + ++++G Q  +      H  +    +L M
Sbjct: 1332 VQGLISQGQFNTAFKQALSASDLSLVMFVCERVNPQQVFNMTPCPLSQDVLLSLVNQLSYDLTVFTDLKLKYLEEAIMNLDSSHPVTREHMRSVLQGFQRNMNMYLMTHPNNKKVKMLLM 1451
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87155.20266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6J0B896_NEOLC2.680e-1441.07enhancer of mRNA-decapping protein 4 n=6 Tax=Dipri... [more]
A0A6J2JRG7_BOMMA4.810e-1441.86enhancer of mRNA-decapping protein 4 n=1 Tax=Bomby... [more]
H9J9B1_BOMMO4.960e-1441.86Uncharacterized protein n=1 Tax=Bombyx mori TaxID=... [more]
UPI0018C3127C4.990e-1441.86enhancer of mRNA-decapping protein 4 isoform X1 n=... [more]
A0A3S2M3C8_CHISP5.090e-1438.93Uncharacterized protein n=1 Tax=Chilo suppressalis... [more]
UPI00103BF3C36.850e-1439.69enhancer of mRNA-decapping protein 4 n=1 Tax=Ostri... [more]
A0A835L680_SPOEX2.160e-1345.92Uncharacterized protein n=1 Tax=Spodoptera exigua ... [more]
A0A2P8YR02_BLAGE2.360e-1341.18Ge1_WD40 domain-containing protein n=1 Tax=Blattel... [more]
UPI00067650CA3.210e-1338.93enhancer of mRNA-decapping protein 4 isoform X1 n=... [more]
A0A5B7DWR7_PORTR3.260e-1336.67Enhancer of mRNA-decapping protein 4 n=5 Tax=Portu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87155contigM-pyrifera_M_contig87155:114..548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score80.5
Seed ortholog evalue7.2e-13
Seed eggNOG ortholog7091.BGIBMGA006103-TA
Preferred nameGe-1
KEGG koko:K12616
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000578,GO:0000932,GO:0000956,GO:0003002,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006401,GO:0006402,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007028,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007315,GO:0007316,GO:0007350,GO:0007351,GO:0007389,GO:0008150,GO:0008152,GO:0008298,GO:0008358,GO:0008595,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009620,GO:0009790,GO:0009798,GO:0009880,GO:0009892,GO:0009948,GO:0009952,GO:0009987,GO:0009994,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0019094,GO:0019222,GO:0019439,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0031047,GO:0031086,GO:0031087,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033962,GO:0034622,GO:0034641,GO:0034655,GO:0035194,GO:0035195,GO:0035282,GO:0035770,GO:0036464,GO:0040029,GO:0043170,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045451,GO:0046483,GO:0046700,GO:0048468,GO:0048469,GO:0048477,GO:0048519,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050832,GO:0050896,GO:0051179,GO:0051641,GO:0051704,GO:0051707,GO:0060255,GO:0060810,GO:0060811,GO:0065003,GO:0065007,GO:0070727,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0098542,GO:1901360,GO:1901361,GO:1901575,GO:1990904
EggNOG free text desc.Enhancer of mRNA-decapping protein
EggNOG OGs38HMV@33154,3BDGA@33208,3CXEH@33213,3SGTR@50557,41VCS@6656,KOG1916@1,KOG1916@2759
COG Functional cat.S
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Exons1
Model size435
Cds size435
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816781.2048335-CDS-M-pyrifera_M_contig87155:113..5481622816781.2048335-CDS-M-pyrifera_M_contig87155:113..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87155 114..548 -
1692278174.7658648-CDS-M-pyrifera_M_contig87155:113..5481692278174.7658648-CDS-M-pyrifera_M_contig87155:113..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87155 114..548 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87155.20266.1prot_M-pyrifera_M_contig87155.20266.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87155 114..548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87155.20266.1

>prot_M-pyrifera_M_contig87155.20266.1 ID=prot_M-pyrifera_M_contig87155.20266.1|Name=mRNA_M-pyrifera_M_contig87155.20266.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
EEKQPTKNELLVARLVEKGDLQRAFNLALGASDLSVVVYLCGRVEPAQVF
EPLLLNQFALLSLVQQLGFDLSSQTAIKLRWLRPALAALRTDEPALAQPL
AAIVEGLQTGVQAAFQQHKGDPAAAVLFMDLLTRCNAIKLALAH*
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mRNA from alignment at M-pyrifera_M_contig87155:114..548-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87155.20266.1 ID=mRNA_M-pyrifera_M_contig87155.20266.1|Name=mRNA_M-pyrifera_M_contig87155.20266.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=435bp|location=Sequence derived from alignment at M-pyrifera_M_contig87155:114..548- (Macrocystis pyrifera P11B4 male)
GAGGAGAAGCAGCCGACGAAGAACGAGCTGCTGGTGGCGCGGCTGGTGGA
GAAGGGCGACCTGCAGCGCGCCTTCAACCTCGCGCTGGGCGCCTCTGACC
TCTCGGTGGTGGTGTACCTCTGCGGCCGCGTGGAGCCGGCGCAGGTGTTC
GAACCGCTGCTGCTGAACCAATTTGCGCTGCTCTCGCTCGTGCAGCAGTT
GGGCTTCGACCTCTCCTCGCAGACGGCCATCAAGCTGCGCTGGCTGAGGC
CCGCGTTGGCCGCACTGCGCACCGACGAGCCTGCGCTGGCCCAGCCGCTC
GCCGCCATCGTGGAAGGCCTGCAGACTGGCGTGCAGGCGGCCTTTCAGCA
GCACAAGGGCGACCCGGCAGCAGCAGTCCTCTTCATGGACCTCCTCACCC
GCTGCAACGCCATCAAGCTGGCCCTCGCCCACTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87155:114..548-

>mRNA_M-pyrifera_M_contig87155.20266.1 ID=mRNA_M-pyrifera_M_contig87155.20266.1|Name=mRNA_M-pyrifera_M_contig87155.20266.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig87155:114..548- (Macrocystis pyrifera P11B4 male)
GAGGAGAAGCAGCCGACGAAGAACGAGCTGCTGGTGGCGCGGCTGGTGGA
GAAGGGCGACCTGCAGCGCGCCTTCAACCTCGCGCTGGGCGCCTCTGACC
TCTCGGTGGTGGTGTACCTCTGCGGCCGCGTGGAGCCGGCGCAGGTGTTC
GAACCGCTGCTGCTGAACCAATTTGCGCTGCTCTCGCTCGTGCAGCAGTT
GGGCTTCGACCTCTCCTCGCAGACGGCCATCAAGCTGCGCTGGCTGAGGC
CCGCGTTGGCCGCACTGCGCACCGACGAGCCTGCGCTGGCCCAGCCGCTC
GCCGCCATCGTGGAAGGCCTGCAGACTGGCGTGCAGGCGGCCTTTCAGCA
GCACAAGGGCGACCCGGCAGCAGCAGTCCTCTTCATGGACCTCCTCACCC
GCTGCAACGCCATCAAGCTGGCCCTCGCCCACTAGGAGGAGAAGCAGCCG
ACGAAGAACGAGCTGCTGGTGGCGCGGCTGGTGGAGAAGGGCGACCTGCA
GCGCGCCTTCAACCTCGCGCTGGGCGCCTCTGACCTCTCGGTGGTGGTGT
ACCTCTGCGGCCGCGTGGAGCCGGCGCAGGTGTTCGAACCGCTGCTGCTG
AACCAATTTGCGCTGCTCTCGCTCGTGCAGCAGTTGGGCTTCGACCTCTC
CTCGCAGACGGCCATCAAGCTGCGCTGGCTGAGGCCCGCGTTGGCCGCAC
TGCGCACCGACGAGCCTGCGCTGGCCCAGCCGCTCGCCGCCATCGTGGAA
GGCCTGCAGACTGGCGTGCAGGCGGCCTTTCAGCAGCACAAGGGCGACCC
GGCAGCAGCAGTCCTCTTCATGGACCTCCTCACCCGCTGCAACGCCATCA
AGCTGGCCCTCGCCCACTAG
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