mRNA_M-pyrifera_M_contig87151.20265.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87151.20265.1
Unique NamemRNA_M-pyrifera_M_contig87151.20265.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87151.20265.1 vs. uniprot
Match: A0A1V9Y7H1_9STRA (Dolichol phosphate-mannose biosynthesis regulatory protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y7H1_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.340e-18
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    4 SDSQLGLLILMTSVPLFGYYTAWTLITPFIDEDHFIQNFFPDRQIAVIVPIVLMIFIITVLLTFFALVMINS 219
            SD  +G ++L  SVP F YYT W LITPF+D+DH +Q+FFPDR  A+ +P +L +  +T+  TF  LVMI S
Sbjct:    7 SDQTVGAIVLAISVPTFAYYTLWVLITPFVDKDHVVQSFFPDRHYAIAIPAILFVIFLTICSTFIGLVMIKS 78          
BLAST of mRNA_M-pyrifera_M_contig87151.20265.1 vs. uniprot
Match: T0R3L5_SAPDV (Dolichol phosphate-mannose biosynthesis regulatory protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=T0R3L5_SAPDV)

HSP 1 Score: 78.6 bits (192), Expect = 1.520e-17
Identity = 35/72 (48.61%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    4 SDSQLGLLILMTSVPLFGYYTAWTLITPFIDEDHFIQNFFPDRQIAVIVPIVLMIFIITVLLTFFALVMINS 219
            SD  +G ++L  SV +F YYT W +ITPF+D+DH +Q FFPDR  A+ +P +L++  +T+  TF  LVMI S
Sbjct:    5 SDQTVGAILLAISVSMFAYYTLWVIITPFVDKDHVVQGFFPDRHYAIAIPAILLVIFLTICSTFIGLVMIKS 76          
BLAST of mRNA_M-pyrifera_M_contig87151.20265.1 vs. uniprot
Match: A0A8H4ESP8_GIGMA (Dolichol phosphate-mannose biosynthesis regulatory protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A8H4ESP8_GIGMA)

HSP 1 Score: 77.0 bits (188), Expect = 7.050e-17
Identity = 36/71 (50.70%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    7 DSQLGLLILMTSVPLFGYYTAWTLITPFIDEDHFIQNFFPDRQIAVIVPIVLMIFIITVLLTFFALVMINS 219
            D  +G  +L++S  LF YYT W LI PF+D+ H +  +FPDR+ A+I+P+VL++F +TV+ TF ALVMI S
Sbjct:    7 DRAIGATLLLSSASLFAYYTIWALIMPFVDDGHPLHEYFPDRKYAIIIPVVLLLFGLTVIFTFLALVMIKS 77          
BLAST of mRNA_M-pyrifera_M_contig87151.20265.1 vs. uniprot
Match: A0A015NKR1_RHIIW (Dolichol phosphate-mannose biosynthesis regulatory protein n=5 Tax=Rhizophagus TaxID=1129544 RepID=A0A015NKR1_RHIIW)

HSP 1 Score: 76.6 bits (187), Expect = 9.490e-17
Identity = 38/72 (52.78%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    4 SDSQLGLLILMTSVPLFGYYTAWTLITPFIDEDHFIQNFFPDRQIAVIVPIVLMIFIITVLLTFFALVMINS 219
            SD  +G  +L+TSV LF YYT W LI PF+D+ H +  +FPDR  A+ +P+VL++F +TV+ TF ALVMI S
Sbjct:    4 SDKAVGATLLLTSVALFLYYTIWALIMPFVDDGHPLHEYFPDRSYAIRIPVVLLLFGLTVVFTFLALVMIKS 75          
BLAST of mRNA_M-pyrifera_M_contig87151.20265.1 vs. uniprot
Match: A0A2Z6RCB7_9GLOM (Dolichol phosphate-mannose biosynthesis regulatory protein n=2 Tax=Rhizophagus TaxID=1129544 RepID=A0A2Z6RCB7_9GLOM)

HSP 1 Score: 76.6 bits (187), Expect = 1.780e-16
Identity = 38/72 (52.78%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    4 SDSQLGLLILMTSVPLFGYYTAWTLITPFIDEDHFIQNFFPDRQIAVIVPIVLMIFIITVLLTFFALVMINS 219
            SD  +G  +L+TSV LF YYT W LI PF+D+ H +  +FPDR  A+ +P+VL++F +TV+ TF ALVMI S
Sbjct:   28 SDKAVGATLLLTSVALFLYYTIWALIMPFVDDGHPLHEYFPDRSYAIRIPVVLLLFGLTVVFTFLALVMIKS 99          
BLAST of mRNA_M-pyrifera_M_contig87151.20265.1 vs. uniprot
Match: A0A485KLX6_9STRA (Dolichol phosphate-mannose biosynthesis regulatory protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KLX6_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 6.180e-15
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1
Query:    4 SDSQLGLLILMTSVPLFGYYTAWTLITPFIDEDHFIQNFFPDRQIAVIVPIVLMIFIITVLLTFFALVMINSLP 225
            SD   G L+L  SV  + YY  W +ITPF+D+DH +Q+FFP+R  A+ +P +L++  +TV  TF  LVMI S P
Sbjct:    5 SDQSTGALLLTVSVVSYIYYILWVIITPFVDKDHVVQSFFPERYYAIAIPSILLVVFLTVCSTFIGLVMIRSKP 78          
BLAST of mRNA_M-pyrifera_M_contig87151.20265.1 vs. uniprot
Match: W4GK31_9STRA (Dolichol phosphate-mannose biosynthesis regulatory protein n=2 Tax=Aphanomyces TaxID=100860 RepID=W4GK31_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.770e-14
Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 1
Query:    4 SDSQLGLLILMTSVPLFGYYTAWTLITPFIDEDHFIQNFFPDRQIAVIVPIVLMIFIITVLLTFFALVMINSLP 225
            SD + G ++L  SV  + YY  W +I+PF+D+DH +Q+FFP+R  A+ +P VL++  +TV  TF  LVMI S P
Sbjct:    5 SDQRAGAILLAVSVVSYVYYFLWVIISPFVDKDHIVQSFFPERYYAIAIPSVLLVVFLTVCSTFIGLVMIRSKP 78          
BLAST of mRNA_M-pyrifera_M_contig87151.20265.1 vs. uniprot
Match: A0A1E3NNJ8_9ASCO (Dolichol phosphate-mannose biosynthesis regulatory protein n=1 Tax=Pichia membranifaciens NRRL Y-2026 TaxID=763406 RepID=A0A1E3NNJ8_9ASCO)

HSP 1 Score: 67.8 bits (164), Expect = 2.760e-13
Identity = 33/73 (45.21%), Postives = 51/73 (69.86%), Query Frame = 1
Query:    1 MSDSQLGLLILMTSVPLFGYYTAWTLITPFIDEDHFIQNFFPDRQIAVIVPIVLMIFIITVLLTFFALVMINS 219
            M D Q+GL++L+ +  +F YYT WT +TPF+D+D  IQNFF  R  A+ +P+V +I  I+++ TF  LV++ S
Sbjct:    1 MQDQQVGLVMLLVATLIFIYYTIWTFVTPFLDDDSIIQNFFLPRYYAIALPVVALIVGISIVATFVGLVIVKS 73          
BLAST of mRNA_M-pyrifera_M_contig87151.20265.1 vs. uniprot
Match: DPM2_DICDI (Dolichol phosphate-mannose biosynthesis regulatory protein n=2 Tax=Dictyostelium TaxID=5782 RepID=DPM2_DICDI)

HSP 1 Score: 67.0 bits (162), Expect = 5.150e-13
Identity = 33/72 (45.83%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    4 SDSQLGLLILMTSVPLFGYYTAWTLITPFIDEDHFIQNFFPDRQIAVIVPIVLMIFIITVLLTFFALVMINS 219
            SD  +G ++++  + +FGYYT W +ITPFI  DH+IQ +F  R+  +I+P+VL++  IT + TF  LVMI S
Sbjct:    4 SDKFIGFVMVLFRIFVFGYYTTWVIITPFIVSDHWIQQYFLPREYGIIIPLVLLVVGITAIGTFLGLVMIKS 75          
BLAST of mRNA_M-pyrifera_M_contig87151.20265.1 vs. uniprot
Match: A0A197JZR7_9FUNG (Dolichol phosphate-mannose biosynthesis regulatory protein (Fragment) n=2 Tax=Mortierellaceae TaxID=4854 RepID=A0A197JZR7_9FUNG)

HSP 1 Score: 66.6 bits (161), Expect = 6.440e-13
Identity = 31/71 (43.66%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    7 DSQLGLLILMTSVPLFGYYTAWTLITPFIDEDHFIQNFFPDRQIAVIVPIVLMIFIITVLLTFFALVMINS 219
            D  +G  +L  S  +F YYT W ++ PF+DE +F+ ++FP R+ A+ +P VL++F +TV+LTF ++VMI S
Sbjct:    1 DKVVGASLLTFSTVVFVYYTLWAIVMPFVDESYFLHDYFPRREYAIRIPCVLLVFGLTVILTFLSMVMIKS 71          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87151.20265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1V9Y7H1_9STRA1.340e-1851.39Dolichol phosphate-mannose biosynthesis regulatory... [more]
T0R3L5_SAPDV1.520e-1748.61Dolichol phosphate-mannose biosynthesis regulatory... [more]
A0A8H4ESP8_GIGMA7.050e-1750.70Dolichol phosphate-mannose biosynthesis regulatory... [more]
A0A015NKR1_RHIIW9.490e-1752.78Dolichol phosphate-mannose biosynthesis regulatory... [more]
A0A2Z6RCB7_9GLOM1.780e-1652.78Dolichol phosphate-mannose biosynthesis regulatory... [more]
A0A485KLX6_9STRA6.180e-1547.30Dolichol phosphate-mannose biosynthesis regulatory... [more]
W4GK31_9STRA1.770e-1445.95Dolichol phosphate-mannose biosynthesis regulatory... [more]
A0A1E3NNJ8_9ASCO2.760e-1345.21Dolichol phosphate-mannose biosynthesis regulatory... [more]
DPM2_DICDI5.150e-1345.83Dolichol phosphate-mannose biosynthesis regulatory... [more]
A0A197JZR7_9FUNG6.440e-1343.66Dolichol phosphate-mannose biosynthesis regulatory... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87151contigM-pyrifera_M_contig87151:146..525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue3.1e-12
Seed eggNOG ortholog112098.XP_008619981.1
Preferred nameDPM2
KEGG rclassRC00005
KEGG koko:K09658
KEGG ReactionR01009,R05916
KEGG Pathwayko00510,ko00563,ko01100,map00510,map00563,map01100
Hectar predicted targeting categorysignal anchor
GOsGO:0000030,GO:0000506,GO:0003674,GO:0003824,GO:0004582,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006066,GO:0006464,GO:0006486,GO:0006487,GO:0006493,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006720,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016093,GO:0016254,GO:0016740,GO:0016757,GO:0016758,GO:0019348,GO:0019538,GO:0019637,GO:0030234,GO:0031224,GO:0031501,GO:0031647,GO:0031984,GO:0032991,GO:0033185,GO:0034645,GO:0035268,GO:0035269,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0048471,GO:0050790,GO:0065007,GO:0065008,GO:0065009,GO:0070085,GO:0071704,GO:0090407,GO:0097502,GO:0097713,GO:0098772,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1902494,GO:1903509,GO:1990234
EggNOG free text desc.dolichol metabolic process
EggNOG OGsKOG3488@1,KOG3488@2759
COG Functional cat.T
CAZyGT2
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons2
Model size225
Cds size225
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816781.1588233-CDS-M-pyrifera_M_contig87151:145..2861622816781.1588233-CDS-M-pyrifera_M_contig87151:145..286Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87151 146..286 -
1692278174.7326167-CDS-M-pyrifera_M_contig87151:145..2861692278174.7326167-CDS-M-pyrifera_M_contig87151:145..286Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87151 146..286 -
1622816781.1748137-CDS-M-pyrifera_M_contig87151:441..5251622816781.1748137-CDS-M-pyrifera_M_contig87151:441..525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87151 442..525 -
1692278174.7488325-CDS-M-pyrifera_M_contig87151:441..5251692278174.7488325-CDS-M-pyrifera_M_contig87151:441..525Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87151 442..525 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87151.20265.1prot_M-pyrifera_M_contig87151.20265.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87151 146..525 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87151.20265.1

>prot_M-pyrifera_M_contig87151.20265.1 ID=prot_M-pyrifera_M_contig87151.20265.1|Name=mRNA_M-pyrifera_M_contig87151.20265.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
MSDSQLGLLILMTSVPLFGYYTAWTLITPFIDEDHFIQNFFPDRQIAVIV
PIVLMIFIITVLLTFFALVMINSLP
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mRNA from alignment at M-pyrifera_M_contig87151:146..525-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87151.20265.1 ID=mRNA_M-pyrifera_M_contig87151.20265.1|Name=mRNA_M-pyrifera_M_contig87151.20265.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=380bp|location=Sequence derived from alignment at M-pyrifera_M_contig87151:146..525- (Macrocystis pyrifera P11B4 male)
ATGAGCGACAGTCAACTGGGCCTTCTGATCCTGATGACCAGTGTACCTCT CTTTGGCTACTACACTGCATGGACCCTCATCACGGTAAGTGTGGCACTCC TAGCAAGTTAGGGAGCACTGGATGGCATGCGTACGTCCAGTGGACATAGA AGAATCCTATGTGGTGGGAGGGAGAGGAGAGCTAGAGCATGTACCTGTGC GTTGGTCCTGCAAGGCAACCTGACTGACGTGCCGTTCAGCCCTTCATAGA TGAAGACCACTTCATCCAGAACTTCTTCCCTGACCGGCAGATTGCTGTCA TTGTTCCCATTGTGCTCATGATATTCATTATCACAGTGCTGCTCACTTTC TTTGCACTCGTGATGATCAACTCTCTGCCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87151:146..525-

>mRNA_M-pyrifera_M_contig87151.20265.1 ID=mRNA_M-pyrifera_M_contig87151.20265.1|Name=mRNA_M-pyrifera_M_contig87151.20265.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig87151:146..525- (Macrocystis pyrifera P11B4 male)
ATGAGCGACAGTCAACTGGGCCTTCTGATCCTGATGACCAGTGTACCTCT
CTTTGGCTACTACACTGCATGGACCCTCATCACGATGAGCGACAGTCAAC
TGGGCCTTCTGATCCTGATGACCAGTGTACCTCTCTTTGGCTACTACACT
GCATGGACCCTCATCACGCCCTTCATAGATGAAGACCACTTCATCCAGAA
CTTCTTCCCTGACCGGCAGATTGCTGTCATTGTTCCCATTGTGCTCATGA
TATTCATTATCACAGTGCTGCTCACTTTCTTTGCACTCGTGATGATCAAC
TCTCTGCCTCCCTTCATAGATGAAGACCACTTCATCCAGAACTTCTTCCC
TGACCGGCAGATTGCTGTCATTGTTCCCATTGTGCTCATGATATTCATTA
TCACAGTGCTGCTCACTTTCTTTGCACTCGTGATGATCAACTCTCTGCCT
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