mRNA_M-pyrifera_M_contig87112.20259.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87112.20259.1
Unique NamemRNA_M-pyrifera_M_contig87112.20259.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig87112.20259.1 vs. uniprot
Match: A0A674IDX1_TERCA (Uncharacterized protein n=3 Tax=Emydidae TaxID=8476 RepID=A0A674IDX1_TERCA)

HSP 1 Score: 58.2 bits (139), Expect = 1.660e-8
Identity = 28/61 (45.90%), Postives = 40/61 (65.57%), Query Frame = 1
Query:   40 NNRGFTKMQNGELQEALGDFTIALKLNPNSISAYSNRAELLVRADKPEAAIADLNQAITRN 222
            N   F  +  GELQ+A+  F+ A+KLNP  +++Y+NRA + V   KP AAI+D N+AI  N
Sbjct:  110 NREAFDVLSKGELQKAIDLFSDAIKLNPYLVNSYTNRANVFVHLQKPNAAISDCNRAIELN 170          
BLAST of mRNA_M-pyrifera_M_contig87112.20259.1 vs. uniprot
Match: A0A4D9E414_9SAUR (Sphingosine kinase 1 n=7 Tax=Durocryptodira TaxID=1579337 RepID=A0A4D9E414_9SAUR)

HSP 1 Score: 58.2 bits (139), Expect = 3.990e-8
Identity = 28/61 (45.90%), Postives = 40/61 (65.57%), Query Frame = 1
Query:   40 NNRGFTKMQNGELQEALGDFTIALKLNPNSISAYSNRAELLVRADKPEAAIADLNQAITRN 222
            N   F  +  GELQ+A+  F+ A+KLNP  +++Y+NRA + V   KP AAI+D N+AI  N
Sbjct:  107 NREAFDVLSKGELQKAIDLFSDAIKLNPYLVNSYTNRANVFVHLQKPNAAISDCNRAIELN 167          
BLAST of mRNA_M-pyrifera_M_contig87112.20259.1 vs. uniprot
Match: UPI0019B0D229 (Tetratricopeptide repeat protein n=1 Tax=Bacteroidia bacterium TaxID=2044936 RepID=UPI0019B0D229)

HSP 1 Score: 56.2 bits (134), Expect = 1.660e-7
Identity = 30/69 (43.48%), Postives = 40/69 (57.97%), Query Frame = 1
Query:    7 VTLNPRFSDGYNNRGFTKMQNGELQEALGDFTIALKLNPNSISAYSNRAELLVRADKPEAAIADLNQAI 213
            + L+P +   Y NRG    Q  +  EA+ DFT A+K N  SISAY+NRA  L+   + + AI DL Q I
Sbjct:  193 IELDPEYEQTYINRGDYYFQQQKTNEAINDFTTAIKKNTKSISAYANRANALMFDKQYKEAIIDLKQCI 261          
BLAST of mRNA_M-pyrifera_M_contig87112.20259.1 vs. uniprot
Match: A0A8J1TEU1_OWEFU (Ofus.G03138 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TEU1_OWEFU)

HSP 1 Score: 52.4 bits (124), Expect = 4.160e-6
Identity = 25/54 (46.30%), Postives = 37/54 (68.52%), Query Frame = 1
Query:   61 MQNGELQEALGDFTIALKLNPNSISAYSNRAELLVRADKPEAAIADLNQAITRN 222
            + +G L++A+G FT A+KLNP+S   Y+ RA + +R  KP AAI D ++AI  N
Sbjct:  124 VSDGRLEDAIGLFTEAIKLNPHSGLLYAKRASVFIRLQKPNAAIRDCDKAILLN 177          
BLAST of mRNA_M-pyrifera_M_contig87112.20259.1 vs. uniprot
Match: A0A6L7TSX6_9CHLR (Tetratricopeptide repeat protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6L7TSX6_9CHLR)

HSP 1 Score: 51.6 bits (122), Expect = 6.650e-6
Identity = 25/57 (43.86%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   49 GFTKMQNGELQEALGDFTIALKLNPNSISAYSNRAELLVRADKPEAAIADLNQAITR 219
            G  + Q G L+EA+  +T AL+L+P    AYSNR    +   +PE AIAD ++AI+R
Sbjct:   35 GVRQQQRGNLEEAVRAYTEALRLDPEMAPAYSNRGSAYLNIGRPELAIADADEAISR 91          
BLAST of mRNA_M-pyrifera_M_contig87112.20259.1 vs. uniprot
Match: A0A2G8LHX7_STIJA (Putative hsc70-interacting protein-like n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LHX7_STIJA)

HSP 1 Score: 50.8 bits (120), Expect = 1.450e-5
Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:   61 MQNGELQEALGDFTIALKLNPNSISAYSNRAELLVRADKPEAAIADLNQA 210
            M +G L+EA+G FT A+K+NP+S   Y+ RA + ++  KP AAI D ++A
Sbjct:   82 MSDGNLEEAVGLFTDAIKINPHSALLYAKRASIYIKQKKPNAAIRDCDRA 131          
BLAST of mRNA_M-pyrifera_M_contig87112.20259.1 vs. uniprot
Match: A0A6P9BR04_PANGU (centrosome-associated protein CEP250-like n=1 Tax=Pantherophis guttatus TaxID=94885 RepID=A0A6P9BR04_PANGU)

HSP 1 Score: 50.1 bits (118), Expect = 2.890e-5
Identity = 25/61 (40.98%), Postives = 38/61 (62.30%), Query Frame = 1
Query:   40 NNRGFTKMQNGELQEALGDFTIALKLNPNSISAYSNRAELLVRADKPEAAIADLNQAITRN 222
            N +    +   ELQ+A+  F+ A+++NPN  S+Y+NRA + ++  KP AAI D N AI  N
Sbjct:   98 NKKALDALAKVELQKAVDLFSEAIEVNPNISSSYTNRANVYMQLQKPNAAIKDCNMAIELN 158          
BLAST of mRNA_M-pyrifera_M_contig87112.20259.1 vs. uniprot
Match: A0A2A4NNC4_9HYPH (GlcNAc transferase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2A4NNC4_9HYPH)

HSP 1 Score: 48.9 bits (115), Expect = 6.370e-5
Identity = 25/62 (40.32%), Postives = 37/62 (59.68%), Query Frame = 1
Query:    1 QAVTLNPRFSDGYNNRGFTKMQNGELQEALGDFTIALKLNPNSISAYSNRAELLVRADKPEA 186
            Q VT NP  ++ +N RG    + G   EAL DF+ A++L+P    AY+NRA +  + +KP A
Sbjct:   49 QVVTRNPGSAEAFNVRGAAYGRAGLTNEALRDFSTAIRLDPQYFQAYANRALINRQTNKPAA 110          
BLAST of mRNA_M-pyrifera_M_contig87112.20259.1 vs. uniprot
Match: UPI00141FCE09 (tetratricopeptide repeat protein n=1 Tax=Rhodocaloribacter litoris TaxID=2558931 RepID=UPI00141FCE09)

HSP 1 Score: 48.9 bits (115), Expect = 7.150e-5
Identity = 21/51 (41.18%), Postives = 32/51 (62.75%), Query Frame = 1
Query:    7 VTLNPRFSDGYNNRGFTKMQNGELQEALGDFTIALKLNPNSISAYSNRAEL 159
            +  NP+F + YNNRGFT++  G+   A  DF  AL L+P+++   +N A L
Sbjct:  569 LRANPKFEEAYNNRGFTRVLQGDATGAEADFKAALALDPDAVMPLANLASL 619          
BLAST of mRNA_M-pyrifera_M_contig87112.20259.1 vs. uniprot
Match: A0A836VJ05_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Latescibacteria bacterium TaxID=2053570 RepID=A0A836VJ05_9BACT)

HSP 1 Score: 48.5 bits (114), Expect = 9.400e-5
Identity = 22/61 (36.07%), Postives = 41/61 (67.21%), Query Frame = 1
Query:    1 QAVTLNPRFSDGYNNRGFTKMQNGELQEALGDFTIALKLNPNSISAYSNRAELLVRADKPE 183
            + +++NP  + G+N+ G   MQ  ++  ALG+F +A++L+P+  +AY+N A LL +  KP+
Sbjct:  115 RGLSINPLSAVGHNSLGAVLMQGPQVLGALGEFKVAIQLDPDLRAAYTNLARLLFKHVKPD 175          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87112.20259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A674IDX1_TERCA1.660e-845.90Uncharacterized protein n=3 Tax=Emydidae TaxID=847... [more]
A0A4D9E414_9SAUR3.990e-845.90Sphingosine kinase 1 n=7 Tax=Durocryptodira TaxID=... [more]
UPI0019B0D2291.660e-743.48Tetratricopeptide repeat protein n=1 Tax=Bacteroid... [more]
A0A8J1TEU1_OWEFU4.160e-646.30Ofus.G03138 protein n=1 Tax=Owenia fusiformis TaxI... [more]
A0A6L7TSX6_9CHLR6.650e-643.86Tetratricopeptide repeat protein n=1 Tax=Chlorofle... [more]
A0A2G8LHX7_STIJA1.450e-546.00Putative hsc70-interacting protein-like n=1 Tax=St... [more]
A0A6P9BR04_PANGU2.890e-540.98centrosome-associated protein CEP250-like n=1 Tax=... [more]
A0A2A4NNC4_9HYPH6.370e-540.32GlcNAc transferase n=1 Tax=Hyphomicrobiales bacter... [more]
UPI00141FCE097.150e-541.18tetratricopeptide repeat protein n=1 Tax=Rhodocalo... [more]
A0A836VJ05_9BACT9.400e-536.07Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87112contigM-pyrifera_M_contig87112:8..229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816780.8715734-CDS-M-pyrifera_M_contig87112:7..2291622816780.8715734-CDS-M-pyrifera_M_contig87112:7..229Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87112 8..229 +
1692278174.5766144-CDS-M-pyrifera_M_contig87112:7..2291692278174.5766144-CDS-M-pyrifera_M_contig87112:7..229Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87112 8..229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87112.20259.1prot_M-pyrifera_M_contig87112.20259.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87112 8..229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87112.20259.1

>prot_M-pyrifera_M_contig87112.20259.1 ID=prot_M-pyrifera_M_contig87112.20259.1|Name=mRNA_M-pyrifera_M_contig87112.20259.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
QAVTLNPRFSDGYNNRGFTKMQNGELQEALGDFTIALKLNPNSISAYSNR
AELLVRADKPEAAIADLNQAITRN
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mRNA from alignment at M-pyrifera_M_contig87112:8..229+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87112.20259.1 ID=mRNA_M-pyrifera_M_contig87112.20259.1|Name=mRNA_M-pyrifera_M_contig87112.20259.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=222bp|location=Sequence derived from alignment at M-pyrifera_M_contig87112:8..229+ (Macrocystis pyrifera P11B4 male)
CAAGCTGTGACGCTCAATCCGCGATTCTCCGACGGCTACAACAATCGCGG CTTCACCAAGATGCAGAATGGTGAACTTCAGGAGGCGTTGGGTGACTTCA CAATCGCGCTCAAGCTCAATCCGAATTCGATCAGTGCCTACAGCAATCGA GCCGAGTTGCTGGTTCGAGCAGACAAGCCCGAAGCTGCGATCGCTGACCT CAACCAGGCGATTACTCGGAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87112:8..229+

>mRNA_M-pyrifera_M_contig87112.20259.1 ID=mRNA_M-pyrifera_M_contig87112.20259.1|Name=mRNA_M-pyrifera_M_contig87112.20259.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig87112:8..229+ (Macrocystis pyrifera P11B4 male)
CAAGCTGTGACGCTCAATCCGCGATTCTCCGACGGCTACAACAATCGCGG
CTTCACCAAGATGCAGAATGGTGAACTTCAGGAGGCGTTGGGTGACTTCA
CAATCGCGCTCAAGCTCAATCCGAATTCGATCAGTGCCTACAGCAATCGA
GCCGAGTTGCTGGTTCGAGCAGACAAGCCCGAAGCTGCGATCGCTGACCT
CAACCAGGCGATTACTCGGAACCAAGCTGTGACGCTCAATCCGCGATTCT
CCGACGGCTACAACAATCGCGGCTTCACCAAGATGCAGAATGGTGAACTT
CAGGAGGCGTTGGGTGACTTCACAATCGCGCTCAAGCTCAATCCGAATTC
GATCAGTGCCTACAGCAATCGAGCCGAGTTGCTGGTTCGAGCAGACAAGC
CCGAAGCTGCGATCGCTGACCTCAACCAGGCGATTACTCGGAAC
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