mRNA_M-pyrifera_M_contig87101.20257.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87101.20257.1
Unique NamemRNA_M-pyrifera_M_contig87101.20257.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87101.20257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87101contigM-pyrifera_M_contig87101:3..218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816780.7867968-CDS-M-pyrifera_M_contig87101:2..2181622816780.7867968-CDS-M-pyrifera_M_contig87101:2..218Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87101 3..218 +
1692278174.5370488-CDS-M-pyrifera_M_contig87101:2..2181692278174.5370488-CDS-M-pyrifera_M_contig87101:2..218Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87101 3..218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87101.20257.1prot_M-pyrifera_M_contig87101.20257.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87101 3..218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87101.20257.1

>prot_M-pyrifera_M_contig87101.20257.1 ID=prot_M-pyrifera_M_contig87101.20257.1|Name=mRNA_M-pyrifera_M_contig87101.20257.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
YIQLARLNTSLGNYNLAPLYLDSAKQIAVNQKDRLEEFYAIRSMGLNLYH
QERYIEAIPFYELSLEGYKSIN
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mRNA from alignment at M-pyrifera_M_contig87101:3..218+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87101.20257.1 ID=mRNA_M-pyrifera_M_contig87101.20257.1|Name=mRNA_M-pyrifera_M_contig87101.20257.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig87101:3..218+ (Macrocystis pyrifera P11B4 male)
TACATTCAACTTGCTCGACTAAATACTAGTTTAGGAAATTACAATCTCGC
ACCCCTATACCTTGATAGTGCGAAGCAAATAGCTGTAAATCAGAAAGATC
GTCTAGAAGAATTTTATGCCATTCGATCAATGGGACTTAACCTTTACCAT
CAAGAACGTTACATTGAGGCCATTCCCTTTTATGAATTATCATTGGAAGG
TTATAAATCAATCAAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig87101:3..218+

>mRNA_M-pyrifera_M_contig87101.20257.1 ID=mRNA_M-pyrifera_M_contig87101.20257.1|Name=mRNA_M-pyrifera_M_contig87101.20257.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig87101:3..218+ (Macrocystis pyrifera P11B4 male)
TACATTCAACTTGCTCGACTAAATACTAGTTTAGGAAATTACAATCTCGC
ACCCCTATACCTTGATAGTGCGAAGCAAATAGCTGTAAATCAGAAAGATC
GTCTAGAAGAATTTTATGCCATTCGATCAATGGGACTTAACCTTTACCAT
CAAGAACGTTACATTGAGGCCATTCCCTTTTATGAATTATCATTGGAAGG
TTATAAATCAATCAACTACATTCAACTTGCTCGACTAAATACTAGTTTAG
GAAATTACAATCTCGCACCCCTATACCTTGATAGTGCGAAGCAAATAGCT
GTAAATCAGAAAGATCGTCTAGAAGAATTTTATGCCATTCGATCAATGGG
ACTTAACCTTTACCATCAAGAACGTTACATTGAGGCCATTCCCTTTTATG
AATTATCATTGGAAGGTTATAAATCAATCAAC
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