mRNA_M-pyrifera_M_contig87098.20253.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig87098.20253.1
Unique NamemRNA_M-pyrifera_M_contig87098.20253.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig87098.20253.1 vs. uniprot
Match: A0A812VQH9_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812VQH9_9DINO)

HSP 1 Score: 99.8 bits (247), Expect = 1.510e-21
Identity = 61/166 (36.75%), Postives = 89/166 (53.61%), Query Frame = 1 
Query:    4 ASRGVLIRLRTRVGVWRIGGVDVEGTTVGGLLEKACGERDLDSGKASLHLRMGQPALDEGKGLKELRARDGAMFFLEYAGDLDGVGVVGAGSPEGVKGKVMVTGDGKLVRKSYEESMKGKAFRPGMGALREMQKQWTWNDFMDLNKSLEFVLKPQEGRVCAKVTLD 501
            A+   L+RLR + G WRI GVD   TTVG L ++    + +   + ++   MG  AL +   L EL A +G M F+ +  ++             VK    V  DG +   S EE  K + ++PG+ ++R+MQKQW W DFMDL +SLE+ + PQE   C K T+D
Sbjct:    3 AADTFLVRLRGKAGTWRIPGVD-RSTTVGQLKQRVFEMKAVSIQEQAISTSMGGGALPDSTTLGELGASNGFMLFVSFEAEV--------APATSVK---KVAADGSITYMSSEELAKARGYKPGVPSMRDMQKQWNWMDFMDLQRSLEWKVVPQEKPHCTKATID 156
[Close]
BLAST of mRNA_M-pyrifera_M_contig87098.20253.1 vs. uniprot
Match: A0A329S327_9STRA (MPN domain-containing protein n=19 Tax=Phytophthora TaxID=4783 RepID=A0A329S327_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 7.720e-14
Identity = 52/163 (31.90%), Postives = 83/163 (50.92%), Query Frame = 1 
Query:   16 VLIRLRTRVGVWRIGGVDVEGTTVGGLLEKACGERDLDSGKASLHL-RMGQPALDEGKGLKELRARDGAMFFLEYAGDLDGVGVVGAGSPEGVKGKVMVTGDGKLVRKSYEESMKGKAFRPGMGALREMQKQWTWNDFMDLNKSLEFVLKPQEGRVCAKVTLD 501
            +LIR+R++ G WR+GG+    +T+  +      +  +   +  L L + G     + + L+ELR   G M FL+Y G+      V  G   G K    +  DG L R +Y +    +AFRPG+ +LR+M+  WT  +FM ++   EF +  Q+    AKV LD
Sbjct:    1 MLIRVRSKNGTWRVGGL-TPSSTITDIKRWIFEQHSIAPAQQQLTLDQQGVQQTTDTQTLRELRVGHGDMLFLDYDGE-----TVSTGGVVGTK----INADGTLTRVAYHDRADKEAFRPGLKSLRDMKMHWTLGEFMRMDAQFEFKISAQKEPQVAKVHLD 153
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig87098.20253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A812VQH9_9DINO1.510e-2136.75Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A329S327_9STRA7.720e-1431.90MPN domain-containing protein n=19 Tax=Phytophthor... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig87098contigM-pyrifera_M_contig87098:10..510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue1.7e-13
Seed eggNOG ortholog67593.Physo129471
KEGG koko:K14015
KEGG Pathwayko04141,map04141
KEGG ModuleM00400,M00403
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0016020,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0030433,GO:0031625,GO:0032182,GO:0033554,GO:0034976,GO:0036503,GO:0042175,GO:0042221,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0050896,GO:0051603,GO:0051716,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901698
EggNOG free text desc.Nuclear pore localisation protein NPL4
EggNOG OGs3QAE2@4776,COG5100@1,KOG2834@2759
COG Functional cat.UY
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Exons1
Model size501
Cds size501
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816780.5147188-CDS-M-pyrifera_M_contig87098:9..5101622816780.5147188-CDS-M-pyrifera_M_contig87098:9..510Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87098 10..510 -
1692278174.358062-CDS-M-pyrifera_M_contig87098:9..5101692278174.358062-CDS-M-pyrifera_M_contig87098:9..510Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig87098 10..510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig87098.20253.1prot_M-pyrifera_M_contig87098.20253.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig87098 10..510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig87098.20253.1

>prot_M-pyrifera_M_contig87098.20253.1 ID=prot_M-pyrifera_M_contig87098.20253.1|Name=mRNA_M-pyrifera_M_contig87098.20253.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=167bp
MASRGVLIRLRTRVGVWRIGGVDVEGTTVGGLLEKACGERDLDSGKASLH
LRMGQPALDEGKGLKELRARDGAMFFLEYAGDLDGVGVVGAGSPEGVKGK
VMVTGDGKLVRKSYEESMKGKAFRPGMGALREMQKQWTWNDFMDLNKSLE
FVLKPQEGRVCAKVTLD
back to top

mRNA from alignment at M-pyrifera_M_contig87098:10..510-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig87098.20253.1 ID=mRNA_M-pyrifera_M_contig87098.20253.1|Name=mRNA_M-pyrifera_M_contig87098.20253.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=501bp|location=Sequence derived from alignment at M-pyrifera_M_contig87098:10..510- (Macrocystis pyrifera P11B4 male)
ATGGCGTCTCGTGGAGTACTGATTCGGCTACGGACCCGAGTGGGTGTGTG
GCGTATCGGAGGAGTCGATGTGGAAGGGACAACGGTCGGTGGTTTGTTGG
AGAAGGCGTGTGGGGAGCGTGACCTGGACAGTGGGAAGGCGTCTCTGCAC
TTGCGCATGGGGCAGCCCGCGCTGGATGAGGGCAAGGGCCTGAAGGAGCT
GCGAGCGCGCGACGGGGCGATGTTTTTCCTGGAATACGCCGGAGATTTGG
ACGGCGTCGGGGTGGTGGGCGCTGGCTCTCCGGAAGGGGTGAAGGGGAAG
GTGATGGTGACGGGGGACGGGAAGTTGGTGCGGAAAAGCTACGAGGAGAG
CATGAAAGGCAAGGCGTTTCGCCCCGGGATGGGGGCGCTGCGGGAAATGC
AGAAACAGTGGACCTGGAACGACTTTATGGACTTGAACAAGAGCCTCGAG
TTTGTGCTGAAGCCGCAAGAGGGCAGGGTCTGTGCGAAAGTGACTTTGGA
C
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig87098:10..510-

>mRNA_M-pyrifera_M_contig87098.20253.1 ID=mRNA_M-pyrifera_M_contig87098.20253.1|Name=mRNA_M-pyrifera_M_contig87098.20253.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1002bp|location=Sequence derived from alignment at M-pyrifera_M_contig87098:10..510- (Macrocystis pyrifera P11B4 male)
ATGGCGTCTCGTGGAGTACTGATTCGGCTACGGACCCGAGTGGGTGTGTG
GCGTATCGGAGGAGTCGATGTGGAAGGGACAACGGTCGGTGGTTTGTTGG
AGAAGGCGTGTGGGGAGCGTGACCTGGACAGTGGGAAGGCGTCTCTGCAC
TTGCGCATGGGGCAGCCCGCGCTGGATGAGGGCAAGGGCCTGAAGGAGCT
GCGAGCGCGCGACGGGGCGATGTTTTTCCTGGAATACGCCGGAGATTTGG
ACGGCGTCGGGGTGGTGGGCGCTGGCTCTCCGGAAGGGGTGAAGGGGAAG
GTGATGGTGACGGGGGACGGGAAGTTGGTGCGGAAAAGCTACGAGGAGAG
CATGAAAGGCAAGGCGTTTCGCCCCGGGATGGGGGCGCTGCGGGAAATGC
AGAAACAGTGGACCTGGAACGACTTTATGGACTTGAACAAGAGCCTCGAG
TTTGTGCTGAAGCCGCAAGAGGGCAGGGTCTGTGCGAAAGTGACTTTGGA
CATGGCGTCTCGTGGAGTACTGATTCGGCTACGGACCCGAGTGGGTGTGT
GGCGTATCGGAGGAGTCGATGTGGAAGGGACAACGGTCGGTGGTTTGTTG
GAGAAGGCGTGTGGGGAGCGTGACCTGGACAGTGGGAAGGCGTCTCTGCA
CTTGCGCATGGGGCAGCCCGCGCTGGATGAGGGCAAGGGCCTGAAGGAGC
TGCGAGCGCGCGACGGGGCGATGTTTTTCCTGGAATACGCCGGAGATTTG
GACGGCGTCGGGGTGGTGGGCGCTGGCTCTCCGGAAGGGGTGAAGGGGAA
GGTGATGGTGACGGGGGACGGGAAGTTGGTGCGGAAAAGCTACGAGGAGA
GCATGAAAGGCAAGGCGTTTCGCCCCGGGATGGGGGCGCTGCGGGAAATG
CAGAAACAGTGGACCTGGAACGACTTTATGGACTTGAACAAGAGCCTCGA
GTTTGTGCTGAAGCCGCAAGAGGGCAGGGTCTGTGCGAAAGTGACTTTGG
AC
back to top